View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15754_low_5 (Length: 245)
Name: NF15754_low_5
Description: NF15754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15754_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 11654868 - 11654785
Alignment:
| Q |
3 |
gaagaggaagaggaagaggaagatgaaggtgtagatgatgaagacggcgatgggttatgtgatgtagaagggctgttagttgat |
86 |
Q |
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| T |
11654868 |
gaagaggaagaggaagaggaagatgaaggtgtagatgatgaagacggtggtgggttatgtgatgtagaagggctgttagttgat |
11654785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 11668636 - 11668553
Alignment:
| Q |
3 |
gaagaggaagaggaagaggaagatgaaggtgtagatgatgaagacggcgatgggttatgtgatgtagaagggctgttagttgat |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
11668636 |
gaagaggaagaggaagaggaagatgaaggtgtagatgatgaagacggtggtgggttatgtgatgtagaagggctgttagttgat |
11668553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 11654680 - 11654648
Alignment:
| Q |
191 |
tggtgagctgtgtggtgtagaagggctttgagg |
223 |
Q |
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| T |
11654680 |
tggtgagctgtgtggtgtagaagggctttgagg |
11654648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 11668448 - 11668416
Alignment:
| Q |
191 |
tggtgagctgtgtggtgtagaagggctttgagg |
223 |
Q |
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| T |
11668448 |
tggtgagctgtgtggtgtagaagggctttgagg |
11668416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25545291 - 25545252
Alignment:
| Q |
1 |
aggaagaggaagaggaagaggaagatgaaggtgtagatga |
40 |
Q |
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||||||||||||||||||||||||| ||||||| |||||| |
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| T |
25545291 |
aggaagaggaagaggaagaggaagaggaaggtgaagatga |
25545252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 25545285 - 25545240
Alignment:
| Q |
1 |
aggaagaggaagaggaagaggaagatgaaggtgtagatgatgaaga |
46 |
Q |
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|||||||||||||||||||||||| ||||| || ||| |||||||| |
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| T |
25545285 |
aggaagaggaagaggaagaggaaggtgaagatgaagaggatgaaga |
25545240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 29532844 - 29532815
Alignment:
| Q |
1 |
aggaagaggaagaggaagaggaagatgaag |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29532844 |
aggaagaggaagaggaagaggaagatgaag |
29532815 |
T |
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