View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15754_low_6 (Length: 215)

Name: NF15754_low_6
Description: NF15754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15754_low_6
NF15754_low_6
[»] chr7 (14 HSPs)
chr7 (19-118)||(29737534-29737633)
chr7 (19-118)||(40232187-40232286)
chr7 (19-118)||(4041076-4041175)
chr7 (19-118)||(6392400-6392499)
chr7 (19-118)||(25943719-25943818)
chr7 (19-118)||(27596158-27596257)
chr7 (18-118)||(38276617-38276717)
chr7 (19-118)||(31689425-31689524)
chr7 (19-118)||(41427720-41427819)
chr7 (19-118)||(24300226-24300315)
chr7 (21-118)||(48838191-48838286)
chr7 (21-109)||(21442881-21442967)
chr7 (21-118)||(22338101-22338196)
chr7 (21-118)||(22619883-22619978)
[»] chr5 (6 HSPs)
chr5 (19-118)||(42897446-42897545)
chr5 (19-118)||(36982315-36982414)
chr5 (19-118)||(14044185-14044283)
chr5 (25-118)||(36767948-36768039)
chr5 (20-118)||(2970738-2970835)
chr5 (24-118)||(33404365-33404457)
[»] chr4 (19 HSPs)
chr4 (19-118)||(39788122-39788221)
chr4 (19-118)||(37064825-37064924)
chr4 (19-118)||(40071521-40071620)
chr4 (19-118)||(54438229-54438328)
chr4 (19-111)||(925215-925307)
chr4 (18-118)||(33800855-33800955)
chr4 (19-118)||(17493882-17493981)
chr4 (19-118)||(20789802-20789900)
chr4 (19-118)||(47199615-47199714)
chr4 (19-118)||(34408729-34408828)
chr4 (19-118)||(32218009-32218108)
chr4 (19-118)||(21240455-21240554)
chr4 (19-109)||(52101177-52101267)
chr4 (21-118)||(28910230-28910325)
chr4 (50-118)||(51744591-51744659)
chr4 (19-87)||(53509745-53509813)
chr4 (21-118)||(46870738-46870833)
chr4 (21-82)||(3172129-3172188)
chr4 (21-61)||(41555593-41555633)
[»] chr3 (10 HSPs)
chr3 (19-118)||(40496902-40497001)
chr3 (19-118)||(51545791-51545890)
chr3 (19-118)||(24709139-24709238)
chr3 (19-118)||(48169853-48169952)
chr3 (19-118)||(54014366-54014465)
chr3 (19-111)||(41346176-41346268)
chr3 (19-118)||(50676603-50676701)
chr3 (19-118)||(48737655-48737754)
chr3 (25-118)||(13542864-13542957)
chr3 (21-118)||(30462801-30462896)
[»] chr2 (16 HSPs)
chr2 (19-118)||(28585755-28585854)
chr2 (19-118)||(43370803-43370902)
chr2 (19-118)||(2110349-2110448)
chr2 (19-118)||(29194117-29194216)
chr2 (19-118)||(4828161-4828260)
chr2 (19-118)||(8381388-8381487)
chr2 (19-113)||(45080495-45080589)
chr2 (18-103)||(9370502-9370587)
chr2 (19-118)||(1779144-1779243)
chr2 (21-118)||(43377280-43377375)
chr2 (21-115)||(42846984-42847076)
chr2 (29-118)||(16970295-16970382)
chr2 (21-82)||(39646437-39646495)
chr2 (21-118)||(31921693-31921788)
chr2 (90-118)||(30422592-30422620)
chr2 (70-118)||(39646378-39646426)
[»] chr1 (14 HSPs)
chr1 (19-118)||(38321774-38321873)
chr1 (19-118)||(50777126-50777225)
chr1 (19-118)||(39150969-39151068)
chr1 (19-118)||(46862685-46862784)
chr1 (19-118)||(28036772-28036872)
chr1 (19-118)||(32045962-32046061)
chr1 (19-118)||(1929289-1929387)
chr1 (19-113)||(8229192-8229286)
chr1 (18-118)||(46371054-46371149)
chr1 (19-118)||(1207524-1207623)
chr1 (21-118)||(40562508-40562603)
chr1 (25-88)||(9129506-9129567)
chr1 (118-156)||(34264264-34264302)
chr1 (21-61)||(38817905-38817945)
[»] chr6 (12 HSPs)
chr6 (19-120)||(16435908-16436009)
chr6 (19-118)||(29182720-29182819)
chr6 (19-118)||(12350401-12350500)
chr6 (19-118)||(28541659-28541758)
chr6 (18-118)||(1241237-1241336)
chr6 (19-118)||(7271150-7271249)
chr6 (19-118)||(30736548-30736647)
chr6 (19-118)||(13042101-13042199)
chr6 (18-118)||(31013567-31013667)
chr6 (21-118)||(1870665-1870760)
chr6 (21-118)||(13210475-13210569)
chr6 (25-82)||(31833696-31833751)
[»] scaffold0519 (1 HSPs)
scaffold0519 (19-118)||(10665-10764)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-118)||(92241-92340)
[»] chr8 (11 HSPs)
chr8 (19-118)||(11254629-11254728)
chr8 (19-118)||(18575157-18575256)
chr8 (19-118)||(27820902-27821001)
chr8 (19-118)||(39907037-39907136)
chr8 (19-118)||(17493655-17493754)
chr8 (19-118)||(38069967-38070066)
chr8 (19-118)||(12738438-12738537)
chr8 (19-118)||(17336042-17336141)
chr8 (21-118)||(9753901-9753997)
chr8 (21-118)||(13243619-13243715)
chr8 (21-116)||(11147782-11147875)
[»] scaffold0047 (1 HSPs)
scaffold0047 (18-118)||(69881-69981)
[»] scaffold0061 (1 HSPs)
scaffold0061 (19-118)||(10089-10188)
[»] scaffold0532 (1 HSPs)
scaffold0532 (19-106)||(3943-4030)
[»] scaffold0318 (1 HSPs)
scaffold0318 (19-87)||(16486-16554)
[»] scaffold1194 (1 HSPs)
scaffold1194 (47-118)||(1127-1196)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 29737534 - 29737633
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29737534 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 29737633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 40232286 - 40232187
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40232286 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 40232187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 4041076 - 4041175
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| |||||    
T  4041076 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaagtatcactccctttc 4041175  T

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Target: chr7; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 6392400 - 6392499
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  6392400 ttaaagtttgtagtggaacaaagaaattaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttc 6392499  T

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Target: chr7; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 25943818 - 25943719
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||| ||||||||||||||||||||||||    
T  25943818 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaatggcaattcagtaaaagtatcactctctttc 25943719  T

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Target: chr7; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 27596257 - 27596158
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  27596257 ttaaagtttgtagtgaaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacccagtaaaagtatcactctctttc 27596158  T

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Target: chr7; HSP #7
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 38276717 - 38276617
Alignment:
Q  18 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctcttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||  |||| |||||||    
T  38276717 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaacatcattctcttt 38276618  T
Q  118 c 118  Q
    |    
T  38276617 c 38276617  T

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Target: chr7; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 31689524 - 31689425
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||| ||||| |||||||||||||||||||  |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  31689524 ttaaagtttatagtgaaacaaagaaagtaatcattttttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 31689425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 41427819 - 41427720
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||||||| ||||||||||    
T  41427819 ttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcaataaaagtattactctctttc 41427720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 24300315 - 24300226
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||          ||||| |||||||||||||||||||||||||||||    
T  24300315 ttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagttt----------acaagggcaactcagtaaaagtatcactctctttc 24300226  T

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Target: chr7; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 48838191 - 48838286
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| |||||  ||| | ||||||| ||||| | ||||||    
T  48838191 aaagtgtgtagtggaacaaagaaagtaatcattacttaaaagtgaa--agttttaaaataataacaaggacaatttagtaaaaatatcattttctttc 48838286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 21442967 - 21442881
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatca 109  Q
    |||||||| ||||||| ||||||||||| |||||||||||||||||  |||||||||||||| ||||| |||| | ||||||| |||||    
T  21442967 aaagtttgcagtggaataaagaaagtaaccattacttaaaagtgaa--agtttcaaaataataacaagggcaatttagtaaaaatatca 21442881  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 22338101 - 22338196
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||| |   |||||||| |||| |||||||||||   |||| |||||||| | ||| |||| ||||||||| ||||||||||||||    
T  22338101 aaagtttgtagtggaatatttaaagtaattattatttaaaagtgaag--gtttaaaaataataataagggcaattcagtaaaaatatcactctctttc 22338196  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 22619883 - 22619978
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||  |||||||| |||| |||||||||||   |||| |||||||| | ||  |||| ||| ||||| ||||||||||||||    
T  22619883 aaagtttgtagtggaacaattaaagtaattattatttaaaagtgaa--ggtttaaaaataataataaaggcaattcaataaaaatatcactctctttc 22619978  T

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Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 42897545 - 42897446
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42897545 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 42897446  T

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Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 36982315 - 36982414
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  36982315 ttaaagtttgtagtggaacaaataaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttc 36982414  T

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Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 14044185 - 14044283
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||||||    
T  14044185 ttaaagtttgtagtggaacaaataaagtaatcattatttaaaagtgaaaaagtttcaaaataatgacaagggcaacttagt-aaagtatcactctctttc 14044283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 36768039 - 36767948
Alignment:
Q  25 tttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||||||| |||||||||||   |||| |||||||| | ||| |||| ||||||||| ||||||||||||||    
T  36768039 tttgtagtggaacaaagaaagtaatcattatttaaaagtgaa--ggtttaaaaataataataagggcaattcagtaaaaatatcactctctttc 36767948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 2970835 - 2970738
Alignment:
Q  20 taaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataa-tgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| | ||||| |||| ||||| ||| ||||| | ||||||    
T  2970835 taaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaa--ggtttcaaaataattaacaagggcaattcagtgaaaatatcattatctttc 2970738  T

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Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 33404365 - 33404457
Alignment:
Q  24 gtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||  |||||||| |||| |||||||| ||   |||| |||||||| | ||| |||| ||||||||| ||||||||||||||    
T  33404365 gtttgtagtggaacaattaaagtaattattatttaaaagtaaag--gtttaaaaataataataagggcaattcagtaaaaatatcactctctttc 33404457  T

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Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 39788122 - 39788221
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  39788122 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 39788221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 37064924 - 37064825
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  37064924 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaaaaatgacaagggcaactcagtaaaagtatcactctctttc 37064825  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 40071620 - 40071521
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40071620 ttaaagtttgtagtggaacaaagaaagtaatcattgcttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 40071521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 54438328 - 54438229
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  54438328 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcactctctttc 54438229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 925307 - 925215
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  925307 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcact 925215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 33800955 - 33800855
Alignment:
Q  18 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctcttt 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  33800955 attaaagtttgtagtggaacaaagaaagtaatcattatttaaaagtgaaaaagtttcaaaatgatgacaagggcaactcagtaaaagtatcactctcttt 33800856  T
Q  118 c 118  Q
    |    
T  33800855 c 33800855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 17493882 - 17493981
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  17493882 ttaaagtttgtagtggaacaaagaaaataattattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaataaaagtatcactctctttc 17493981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 20789802 - 20789900
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  20789802 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaag-gcagctcagtaaaagtatcactctctttc 20789900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 47199615 - 47199714
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||| ||||||||||||||    
T  47199615 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcaataaaaatatcactctctttc 47199714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 34408828 - 34408729
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  34408828 ttaaagtttgtagtataacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaataaaagtatcattctctttc 34408729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 32218108 - 32218009
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  | | ||||||||| ||| | ||||||||    
T  32218108 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggactattcagtaaaaatataattctctttc 32218009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 21240455 - 21240554
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||   ||| ||||||||| ||||| ||||||||    
T  21240455 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaaatgaaaaagtttcaaaatagtgacaatgtcaattcagtaaaaatatcattctctttc 21240554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 52101177 - 52101267
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatca 109  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||| | |||||||||||||||||| |||| ||||||||| |||||    
T  52101177 ttaaagtttgtagtggaacaaagaaaataaccattacttaaaagtgaaaaaatttcaaaataatgacaagtgcaattcagtaaaaatatca 52101267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 28910325 - 28910230
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||  ||| ||||||||| ||||| ||||||||    
T  28910325 aaagtttctagtggaacaaagaaagtaatcattacttaaaagtgaa--ggtttcaaaataataacaaggacaattcagtaaaaatatcattctctttc 28910230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 51744659 - 51744591
Alignment:
Q  50 cattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||  |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  51744659 cattacttaaaagtgaacaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttc 51744591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 53509813 - 53509745
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaa 87  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||    
T  53509813 ttaaaatttgtagtggaacaaagaaaataatcattatttaaaagtgaaaaagtttcaaaataatgacaa 53509745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 46870738 - 46870833
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||   ||||||||||||| |||||  | | ||||||||| ||||| ||||||||    
T  46870738 aaagtttgtagtggaacaaagaaagtcatcattacttaaaagtgaa--ggtttcaaaataataacaaggactattcagtaaaaatatcattctctttc 46870833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 3172188 - 3172129
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataat 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||    
T  3172188 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaa--ggtttcaaaataat 3172129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 41555593 - 41555633
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaa 61  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  41555593 aaagtttgtagtgaaacaaagaaagtaatcattacttaaaa 41555633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 7e-45; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 40496902 - 40497001
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40496902 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 40497001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 51545791 - 51545890
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  51545791 ttaaagtttgtagtggaacaaaaaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 51545890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 24709139 - 24709238
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||    
T  24709139 ttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 24709238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 48169853 - 48169952
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||| ||||||||||||||||    
T  48169853 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcagctcagtaatagtatcactctctttc 48169952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 54014366 - 54014465
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  54014366 ttaaagtttgtagtggaacaaagaaagtaattattacttaaaagtgaaaaagtttcaaaataatgataagggcaactcagtaaaagtatcactctctttc 54014465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 41346176 - 41346268
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  41346176 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcact 41346268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 50676603 - 50676701
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  50676603 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaag-gcaactcagtaaaaatatcactctctttc 50676701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 48737655 - 48737754
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||| | ||||||    
T  48737655 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattttctttc 48737754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 13542957 - 13542864
Alignment:
Q  25 tttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  13542957 tttgtagcgaaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaagtatcaatctctttc 13542864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 30462801 - 30462896
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||  |||||||| |||| |||||||||||   |||| |||||||| | ||| |||| ||||||||| ||||||||| ||||    
T  30462801 aaagtttgtagtggaacaattaaagtaattattatttaaaagtgaa--ggtttaaaaataataataagggcaattcagtaaaaatatcactctatttc 30462896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 28585854 - 28585755
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28585854 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 28585755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 43370803 - 43370902
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43370803 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 43370902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 2110349 - 2110448
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2110349 ttaaagtttgtagtggaacaaaaaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 2110448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 29194117 - 29194216
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29194117 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 29194216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 4828260 - 4828161
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  4828260 ttaaagtttatagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttc 4828161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 8381487 - 8381388
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  8381487 ttaaaatttgtagtggaacaaagaaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctatttc 8381388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 113
Target Start/End: Complemental strand, 45080589 - 45080495
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactct 113  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||||    
T  45080589 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaacataatgataagggcaactcagtaaaagtatcactct 45080495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 9370502 - 9370587
Alignment:
Q  18 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaa 103  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| |||||||||    
T  9370502 attaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaattcagtaaaa 9370587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 1779243 - 1779144
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||   ||| ||||||||| ||||| | ||||||    
T  1779243 ttaaagtttgtagtggaataaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaattcagtaaaaatatcattatctttc 1779144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 43377375 - 43377280
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||  ||| ||||||||||||||| | ||||||    
T  43377375 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaa--ggtttcaaaataataacaagtacaattcagtaaaagtatcattttctttc 43377280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 42847076 - 42846984
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctct 115  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||    |||||||||||| |||||  ||| | ||||||| ||||| |||||    
T  42847076 aaagtttgtaatggaacaaagaaaataatcattacttaaaagtgaa--gatttcaaaataataacaaggacaatttagtaaaaatatcattctct 42846984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 16970295 - 16970382
Alignment:
Q  29 tagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||| ||||||||||||||||||||||||||||||||   |||| |||||||| | ||| |||| ||||||||| ||||| | ||||||    
T  16970295 tagtgaaacaaagaaagtaatcattacttaaaagtgaa--ggtttaaaaataataataagggcaattcagtaaaaatatcattatctttc 16970382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 39646495 - 39646437
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataat 82  Q
    |||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||    
T  39646495 aaagtttgtagtggaacaaa-aaagtaatcattacttaaaagtgaa--ggtttcaaaataat 39646437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 31921788 - 31921693
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||| ||||||||||||||  |||||||| |||| |||||||||||   |||| |||||||| | ||| |||| | ||||||| ||||||||||||||    
T  31921788 aaagcttgtagtggaacaattaaagtaattattatttaaaagtgaa--ggtttaaaaataataataagggcaatttagtaaaaatatcactctctttc 31921693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 30422592 - 30422620
Alignment:
Q  90 gcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||||||    
T  30422592 gcaactcagtaaaagtatcactctctttc 30422620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 39646426 - 39646378
Alignment:
Q  70 gtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||| ||||| |||| ||||||||| ||||| ||||||||    
T  39646426 gtttcaaaataataacaagggcaattcagtaaaaatatcattctctttc 39646378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 38321774 - 38321873
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38321774 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 38321873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 50777126 - 50777225
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50777126 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 50777225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 39151068 - 39150969
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  39151068 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcattctctttc 39150969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 46862685 - 46862784
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  46862685 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcaggaaaagtatcactctctttc 46862784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 28036872 - 28036772
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagt-aaaagtatcactctcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||| |||||||||||||    
T  28036872 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaaaatatcactctcttt 28036773  T
Q  118 c 118  Q
    |    
T  28036772 c 28036772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 32045962 - 32046061
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||| |||||||||||||| ||||||    
T  32045962 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataacgacaagggcaactcggtaaaagtatcactttctttc 32046061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 1929387 - 1929289
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  1929387 ttaaagtttgtagtggaacaaaaaaaa-aatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctttttc 1929289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 19 - 113
Target Start/End: Original strand, 8229192 - 8229286
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactct 113  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||    
T  8229192 ttaaagtttgtagtgaaataaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactcagtaaaaatatcactct 8229286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 46371054 - 46371149
Alignment:
Q  18 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctcttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||     ||||| |||||||||||||||||||| |||| |||||||||||||||||||||||    
T  46371054 attaaagtttgtagtggaacaaagaaagtaatcattactt-----tgaaaaagtttcaaaataatgacaagggcaattcagtaaaagtatcactctcttt 46371148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 1207623 - 1207524
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||| | ||||||    
T  1207623 ttaaagtttgtagaggaacaaggaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattatctttc 1207524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 40562603 - 40562508
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||| ||||||||||||||||||||||||||||||  || |||||||||||||| ||||| |||| ||||||||| ||||| ||||||||    
T  40562603 aaagtttgtagtagaacaaagaaagtaatcattacttaaaagt--aaaagtttcaaaataataacaagggcaattcagtaaaaatatcattctctttc 40562508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 9129567 - 9129506
Alignment:
Q  25 tttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaag 88  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||| |||||    
T  9129567 tttgtagtggaacaaagaaagtaatcattacttaaaagtgaa--agtttaaaaataataacaag 9129506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 156
Target Start/End: Complemental strand, 34264302 - 34264264
Alignment:
Q  118 catgaagcaatttttgtcacattttaaatgtaataaacc 156  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  34264302 catgaagcaatttttgtcacatttcaaatgtaataaacc 34264264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 38817905 - 38817945
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaa 61  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  38817905 aaagtttgtagtgaaacaaagaaagtaataattacttaaaa 38817945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 16435908 - 16436009
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  16435908 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactttctttc 16436007  T
Q  119 at 120  Q
    ||    
T  16436008 at 16436009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 29182720 - 29182819
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  29182720 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaaatatcactctctttc 29182819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 12350401 - 12350500
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||    
T  12350401 ttaaagtttgtagtaaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagcatcactctctttc 12350500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 28541758 - 28541659
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  28541758 ttaaagtttgtagtggaacaaaaaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaacccagtaaaagtatcactctctttc 28541659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 1241237 - 1241336
Alignment:
Q  18 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctcttt 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |||||    
T  1241237 attaaagtttgcagtggaacaaagaaagtaatcattacttaaaa-tgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactttcttt 1241335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 7271249 - 7271150
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||| ||| ||||    
T  7271249 ttaaagtttgtagtggaataaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattctatttc 7271150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 30736548 - 30736647
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||| ||||||||| ||||| ||||||||    
T  30736548 ttaaagtttgtagaggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaattcagtaaaaatatcattctctttc 30736647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 13042101 - 13042199
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| | |||  ||||||||||||| |||||||||||||| ||||||||||||||    
T  13042101 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaa-attttttaaataatgacaagggcaactcagtaaaaatatcactctctttc 13042199  T

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Target: chr6; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 31013667 - 31013567
Alignment:
Q  18 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctcttt 117  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||||| ||||| | |||||    
T  31013667 attaaagtttgtagtagaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgataagggcaattcagtaaaaatatcattatcttt 31013568  T
Q  118 c 118  Q
    |    
T  31013567 c 31013567  T

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Target: chr6; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 1870665 - 1870760
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||| ||||| |||| | ||||||| ||||| || |||||    
T  1870665 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaa--ggcttcaaaataataacaagggcaatttagtaaaaatatcattccctttc 1870760  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 13210475 - 13210569
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||||||  |||||||||||||||  ||||||||||| || ||||| || | |||||||||  |||| ||||||||    
T  13210475 aaagtttgtagtggaacaaagaaagtaattcttacttaaaagtgaa--agtttcaaaat-ataacaagggcgattcagtaaaataatcattctctttc 13210569  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 31833751 - 31833696
Alignment:
Q  25 tttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataat 82  Q
    |||||||||||||||||||| |||||||||||||||| ||||   |||||||||||||    
T  31833751 tttgtagtggaacaaagaaaataatcattacttaaaaatgaa--ggtttcaaaataat 31833696  T

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Target: scaffold0519 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 10764 - 10665
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  10764 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 10665  T

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Target: scaffold0016 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 92340 - 92241
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  92340 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtgtcactctctttc 92241  T

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Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 11254629 - 11254728
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11254629 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 11254728  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 18575157 - 18575256
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18575157 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 18575256  T

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Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 27820902 - 27821001
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27820902 ttaaaatttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactctctttc 27821001  T

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Target: chr8; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 39907037 - 39907136
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||||||    
T  39907037 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgataagggcaactcagtaaaagtatcactctctttc 39907136  T

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Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 17493655 - 17493754
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  17493655 ttaaagtttgtagtggaacaaataaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaacttagtaaaagtatcactctctttc 17493754  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 38070066 - 38069967
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  38070066 ttaaagtttgtagtggaacaaagaaaataatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaactcagtaaaagtatcactatctttc 38069967  T

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Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 12738537 - 12738438
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||| ||||| | ||||||    
T  12738537 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaattcagtaaaaatatcattatctttc 12738438  T

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Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 17336141 - 17336042
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||  ||  ||||||||| ||||| ||||||||    
T  17336141 ttaaagtttctagtggaacaacgaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacagttcagtaaaaatatcattctctttc 17336042  T

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Target: chr8; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 9753901 - 9753997
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataa-tgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||   |||||||||||| | |||||  ||| ||||||||| ||||| | ||||||    
T  9753901 aaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaa--ggtttcaaaataattaacaaggacaattcagtaaaaatatcattatctttc 9753997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 13243715 - 13243619
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataa-tgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||   |||||||||||| | |||||  ||| ||||||||| ||||| | ||||||    
T  13243715 aaagtttgtagtggaacaaagaaaataatcattacttaaaaatgaa--ggtttcaaaataattaacaaggacaattcagtaaaaatatcattatctttc 13243619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 11147782 - 11147875
Alignment:
Q  21 aaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctt 116  Q
    |||||||||||||||||||  |||||||| |||| |||||||||||   |||| |||||||| | ||| |||| ||||||||| ||||| ||||||    
T  11147782 aaagtttgtagtggaacaattaaagtaattattatttaaaagtgaa--ggtttaaaaataataataagggcaattcagtaaaaatatcattctctt 11147875  T

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Target: scaffold0047 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 69881 - 69981
Alignment:
Q  18 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctcttt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| |||||||||||||    
T  69881 attaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaactcagtaaaattatcactctcttt 69980  T
Q  118 c 118  Q
    |    
T  69981 c 69981  T

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Target: scaffold0061 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 10188 - 10089
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||    
T  10188 ttaaagtttatagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataataacaagggcaactcagtaaaaatatcactctctttc 10089  T

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Target: scaffold0532 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 3943 - 4030
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagta 106  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  3943 ttaaagtttgtaatggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggtaactcagtaaaagta 4030  T

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Target: scaffold0318 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 16486 - 16554
Alignment:
Q  19 ttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaacagtttcaaaataatgacaa 87  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  16486 ttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 16554  T

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Target: scaffold1194 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 118
Target Start/End: Original strand, 1127 - 1196
Alignment:
Q  47 aatcattacttaaaagtgaaacagtttcaaaataatgacaagagcaactcagtaaaagtatcactctctttc 118  Q
    ||||||||||||||||||||   ||||||||||||| |||||||||| ||||||||| ||||| ||||||||    
T  1127 aatcattacttaaaagtgaag--gtttcaaaataataacaagagcaattcagtaaaaatatcattctctttc 1196  T

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