View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15755_low_1 (Length: 358)
Name: NF15755_low_1
Description: NF15755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15755_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 3 - 343
Target Start/End: Original strand, 8974314 - 8974654
Alignment:
| Q |
3 |
atcaaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaacaagctcctagcgtggatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8974314 |
atcaaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaaccagctcctagcgtggatt |
8974413 |
T |
|
| Q |
103 |
tttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatat |
202 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974414 |
tttatagttcaagaggtccttctgaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatat |
8974513 |
T |
|
| Q |
203 |
tcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcactt |
302 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974514 |
tcctgtgttggagtttgggtcacgtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcactt |
8974613 |
T |
|
| Q |
303 |
ttgaaagctgcacatgttgattggagccctgcagctattag |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8974614 |
ttgaaagctgcacatgttgattggagccctgcagctattag |
8974654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 343
Target Start/End: Original strand, 8962919 - 8963258
Alignment:
| Q |
4 |
tcaaagattacatacaaagtaactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaacaagctcctagcgtggattt |
103 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||| || ||||| |||||||| |
|
|
| T |
8962919 |
tcaaagattacatacatagtaactttaactctagttcaatagaaaaaatgtctttcaagattacatcttttggtgctaaaccagtacctagggtggattt |
8963018 |
T |
|
| Q |
104 |
ttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatatt |
203 |
Q |
| |
|
||||||||| ||||| || ||| | ||||| ||| |||| ||||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||| || |
|
|
| T |
8963019 |
ttatagttctagagggccatcaaagagttgtccatatgtgttgaaacctgacattacagctcccggtacgtcaatcttagctgcatggcctccaaatgtt |
8963118 |
T |
|
| Q |
204 |
cctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttt |
303 |
Q |
| |
|
||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
8963119 |
cctgtgttggattttgggtctcataaagtcgtcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgccggtgtaggagcacttt |
8963218 |
T |
|
| Q |
304 |
tgaaagctgcacatgttgattggagccctgcagctattag |
343 |
Q |
| |
|
|||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
8963219 |
tgaaaggagcacatgctgattggagcccgacagctattag |
8963258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 107 - 340
Target Start/End: Complemental strand, 8946059 - 8945829
Alignment:
| Q |
107 |
tagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcct |
206 |
Q |
| |
|
|||||| ||||| || ||| | ||||| ||| |||| ||||||||||||||||| | ||||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
8946059 |
tagttcgagaggaccatcaaatagttgtccatatgtcttgaaacctgacattacggctcctgatacatcaatcttagctgcatggcccacaaaacttcct |
8945960 |
T |
|
| Q |
207 |
gtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttga |
306 |
Q |
| |
|
|||||||| || | | ||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| | |
|
|
| T |
8945959 |
gtgttggatcctgtgaccg---aagtcttcaacaagttcaaatttttaactggaacatctacgtcatgtcctcatgttgccggtgtaggagcacttttaa |
8945863 |
T |
|
| Q |
307 |
aagctgcacatgttgattggagccctgcagctat |
340 |
Q |
| |
|
||| || | |||||||||||||||||||||||| |
|
|
| T |
8945862 |
aaggagcgcgtgttgattggagccctgcagctat |
8945829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 104 - 334
Target Start/End: Original strand, 8958005 - 8958235
Alignment:
| Q |
104 |
ttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatatt |
203 |
Q |
| |
|
||||||||||||||| |||||| | ||||| ||| || |||||||||||||||| || | |||||||||| ||||||||||||||||| |||||| || |
|
|
| T |
8958005 |
ttatagttcaagagggccttcaaatagttgtccatatattttgaaacctgacatcactgctcctggtacaaatatcttagctgcatggcccacaaatgtt |
8958104 |
T |
|
| Q |
204 |
cctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttt |
303 |
Q |
| |
|
|||||| ||| || ||| | ||| ||||||||||||||||| | ||||||||||||||||| ||| |||||||||||| ||||| | ||||||| |
|
|
| T |
8958105 |
cctgtgatgggtttggggactcataagatcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcacttt |
8958204 |
T |
|
| Q |
304 |
tgaaagctgcacatgttgattggagccctgc |
334 |
Q |
| |
|
|||||| ||||| | ||||||||||||||| |
|
|
| T |
8958205 |
tgaaaggagcacacggtgattggagccctgc |
8958235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 9948363 - 9948300
Alignment:
| Q |
276 |
cctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggagccctgcagctat |
340 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
9948363 |
cctcatgttgctggtgttggagcacttttgaaaggagcacatgctgattgga-ccctgcagctat |
9948300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 54 - 328
Target Start/End: Complemental strand, 19375989 - 19375715
Alignment:
| Q |
54 |
tctttcaagataacatcttttggtgctaaacaagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctg |
153 |
Q |
| |
|
|||||||||| |||| |||||||| ||||| | | ||||| || ||| |||||||||||||||| |||||| | | ||| ||| ||| |||||||| | |
|
|
| T |
19375989 |
tctttcaagaaaacaatttttggtgttaaaccaacacctagtgttgatctttatagttcaagagggccttcaaataattgtccatttgtgttgaaacccg |
19375890 |
T |
|
| Q |
154 |
acattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaatttttt |
253 |
Q |
| |
|
|||| || | || ||||||||||||||||||||||||||| |||||| ||| ||||||||| || ||| | |||||||||||||||||||||||| | |
|
|
| T |
19375889 |
acatcactgctcttggtacatcaatcttagctgcatggccaacaaatgttcatgtgttggatttggggacttttaaagtcttcaacaagttcaatttgat |
19375790 |
T |
|
| Q |
254 |
aagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaagctgcacatgttgattggag |
328 |
Q |
| |
|
|||||||||||||||| ||| |||||| ||||| ||| ||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
19375789 |
aagtggaacatctatggcatgtcctcacgttgcaggtatagcattacttttgaaaggagcacatgttgattggag |
19375715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 309
Target Start/End: Complemental strand, 21687306 - 21687023
Alignment:
| Q |
23 |
taactctaactccagttcaatagaaaaaatttctttcaagataacatcttttggtgctaaacaagctcctagcgtggatttttatagttcaagaggtcct |
122 |
Q |
| |
|
|||||||||| | |||||||||| ||| || |||||||||| |||| |||| |||| |||| | | ||||| |||||||||||||| ||||| || || |
|
|
| T |
21687306 |
taactctaacgctagttcaatagcaaacatgtctttcaagaaaacagctttcggtgttaaatcaacacctagtgtggatttttatagctcaaggggacca |
21687207 |
T |
|
| Q |
123 |
tcagaaagttgcccaaatgttttgaaacctgacattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggt |
222 |
Q |
| |
|
||| | ||||| ||| |||| |||||||||||||| || | |||||||||||||||||||||||||||||| ||||| ||||||||| | |||||| |
|
|
| T |
21687206 |
tcaaatagttgtccatatgtgttgaaacctgacatcactgctcctggtacatcaatcttagctgcatggcccacaaacgttcctgtgtccaattttggg- |
21687108 |
T |
|
| Q |
223 |
caagtaaagtcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag |
309 |
Q |
| |
|
| | ||||||| ||||| |||||||| || ||||||||||||||||| ||| |||||||| ||||||| ||| ||||| |||| |
|
|
| T |
21687107 |
--actgaagtctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgcttttaaaag |
21687023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 34962895 - 34962640
Alignment:
| Q |
54 |
tctttcaagataacatcttttggtgctaaacaagctcctagcgtggatttttatagttcaagaggtccttcagaaagttgcccaaatgttttgaaacctg |
153 |
Q |
| |
|
||||||| || |||| |||||| |||||| ||| ||||| || |||| |||||||||||||| || ||| | ||||| ||| ||| |||||||||| |
|
|
| T |
34962895 |
tctttcatgaaaacagtttttggaactaaaccagcacctagtgttgattcatatagttcaagagggccatcatatagttgtccatttgtgttgaaacctg |
34962796 |
T |
|
| Q |
154 |
acattacaggtcctggtacatcaatcttagctgcatggcctacaaatattcctgtgttggagtttgggtcaagtaaagtcttcaacaagttcaatttttt |
253 |
Q |
| |
|
||||||| | |||||||| || |||||||| ||||||||||||||| |||||||| |||| |||| ||| |||| | |||| ||| |||||||| | |
|
|
| T |
34962795 |
acattactgcgcctggtacttcgatcttagcggcatggcctacaaatgttcctgtgatggaatttgagtctcataaaattttcagcaaattcaatttgat |
34962696 |
T |
|
| Q |
254 |
aagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag |
309 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| ||||| | || |||||||||| |
|
|
| T |
34962695 |
aagtggaacatctatggcgtgccctcatgttgcaggtgtcgcggcgcttttgaaag |
34962640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 49008292 - 49008369
Alignment:
| Q |
232 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag |
309 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |||| |
|
|
| T |
49008292 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
49008369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University