View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15755_low_5 (Length: 230)
Name: NF15755_low_5
Description: NF15755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15755_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 9 - 214
Target Start/End: Original strand, 178076 - 178278
Alignment:
| Q |
9 |
agtgagaagaagtacaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcatcaacatgaatcatcttcagaaagtatgtttgggt |
108 |
Q |
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| T |
178076 |
agtgacaaaaagcacaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcatcaacatgaatcatcttcagaaagtatgtttgggt |
178175 |
T |
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| Q |
109 |
caaagaagtgggagaaatcatcacttcatttcattgatttaattagatgtgcttatctccccatgaaaattagcactaagcactctgattctcataaaga |
208 |
Q |
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| T |
178176 |
caaagaagtgggagaa---atcacttcatttcattgatttaattagatgtgcttatctccccatgaaaattagcactaagaactctgattctcataaaga |
178272 |
T |
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| Q |
209 |
gtgttt |
214 |
Q |
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| T |
178273 |
gtgttt |
178278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 115698 - 115550
Alignment:
| Q |
22 |
acaaatggtttctaaatcttgcacatgaatattttgtatcttgttatcctcatcaacatgaatcatcttcagaaagtatgtttgggtcaaagaagtggga |
121 |
Q |
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| T |
115698 |
acaattggtttctcaagcttgcacatgagtattttgcatcttgttacccgcatcacaagga---atcttcagaaagaaagtttgaggcaaagaaatggga |
115602 |
T |
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| Q |
122 |
gaaatcatcacttcatttcattgatttaattagatgtgcttatctccccatgaaa |
176 |
Q |
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| T |
115601 |
gaa---atcacgtcatttcactgatttgattagatattcctatctccctatgaaa |
115550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 176
Target Start/End: Complemental strand, 37438263 - 37438176
Alignment:
| Q |
86 |
atcttcagaaagtatgtttgggtcaaagaagtgggagaaatcatcacttcatttcattgatttaattagatgtgcttatctccccatgaaa |
176 |
Q |
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| T |
37438263 |
atcttcagaaagaaagtttgagtcaaaaaattgggacaaataa---cttcatttcattgatttgattagatgttatgatctcccgatgaaa |
37438176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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