View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_high_14 (Length: 263)
Name: NF15756_high_14
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 36610260 - 36610499
Alignment:
| Q |
8 |
catcacagacacgttgaaaaacaattaggtaatgatgagaaaaagaacaggcttatctttttacttagaaattagctccagtttattacacaaggttgca |
107 |
Q |
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| T |
36610260 |
catcacaaacacgttgaaaaacaattaggtaataatgagaaaaagaagaggcttatctttttacttagaaattagctccagtttattacacaaggttgca |
36610359 |
T |
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| Q |
108 |
aaggtaggaagtgcagtgaaatccaaagtgtatagaactaacactgacaataatgatggaatggaaacaaagaatggctttcaagatcaataatgataga |
207 |
Q |
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| T |
36610360 |
aaggtaggaagtgcagtgaaatccaaagtgtatagaactaacactgacaataatgatggaatggaaacaaagaatggctttcaagatcaataatgataga |
36610459 |
T |
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| Q |
208 |
gaaaagacaaagcactttctgaggtgagtattggaaaaag |
247 |
Q |
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| T |
36610460 |
gaaaagacaaagcactttctgaggtgagtattggaaaaag |
36610499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 45548546 - 45548468
Alignment:
| Q |
68 |
ttacttagaaattagctccagtttattacacaaggttgcaaaggtaggaagtgcagtgaaatccaaagtgtatagaactaa |
148 |
Q |
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| T |
45548546 |
ttactgagaaattagctccagtttatggaa--aggttgcagaggtaggaagtgcagtgaaatccaaagtatatggaactaa |
45548468 |
T |
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