View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_high_15 (Length: 262)
Name: NF15756_high_15
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 40277729 - 40277962
Alignment:
| Q |
13 |
atataaacacacacaaaacatcagcatttgctacttgttacgttccctgcaggtattgttcagattaggggggagggtgggataca-------acagtta |
105 |
Q |
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| T |
40277729 |
atatatacacacacaaaacatcagcatttgctac-------gttccctgcaagtattgttcagactaggg---agggtgggatacaccttagaacagtta |
40277818 |
T |
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| Q |
106 |
ataagagaaacagagtaagattttaacttcataataattgttcagactaaataagtttatattacatatcaaacacaactttatagttctggtaatagtc |
205 |
Q |
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| T |
40277819 |
ataagagaaacagagtaagattttaacttcataataattgttcagactaaataagtttatattacatatcaaacacaactttatagttctggtaatagtc |
40277918 |
T |
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| Q |
206 |
actgatccatccttgtattagcttgacctcagtggccctatgct |
249 |
Q |
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| T |
40277919 |
actgatccatccttgtattagcttgacctcagtggccctttgct |
40277962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 231
Target Start/End: Original strand, 30574947 - 30575088
Alignment:
| Q |
98 |
aacagttaataagagaaacagagtaa---gattttaacttcataataattgttcaga--ctaaataagtttata---ttacatatcaaacacaactttat |
189 |
Q |
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| T |
30574947 |
aacagttgataagagaaacaaagaaatggggttttaactttataataattgtttagagactaaataagtttatactattatatatcaaacacaatattat |
30575046 |
T |
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| Q |
190 |
agttctggtaatagtcactgatccatccttgtattagcttga |
231 |
Q |
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| T |
30575047 |
tgttctggtaatagtcaatgttccacccttctactagcttga |
30575088 |
T |
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