View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_high_19 (Length: 243)
Name: NF15756_high_19
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 83 - 233
Target Start/End: Complemental strand, 26439724 - 26439574
Alignment:
| Q |
83 |
aggacaaaatcatggaaaaatggtacgaattgttgcttgtgggatggagtgagttgtgacataaaatcaggctacgtgattggcctcaaccttacttgcg |
182 |
Q |
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| T |
26439724 |
aggacaaaatcatggaaaaatggtacgaattgttgcttgtgggatggagtgagttgtgacacaaaatcaggctacgtgattggcatcgaccttacttgcg |
26439625 |
T |
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| Q |
183 |
gttcacttcaaggtaaacttcatcctaatagcactctcttccatcttcatc |
233 |
Q |
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| T |
26439624 |
gttcacttcaaggtaaacttcatcccaatagcactctcttccatcttcatc |
26439574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 26452086 - 26452016
Alignment:
| Q |
16 |
caaccatgatgattcctctgccttgcttgaattcaagaattcttttagtcttaatgtttccttcattagga |
86 |
Q |
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| T |
26452086 |
caaccatgatgattcctctgccttgcttgaattcaagaattcttttagtcttaatgtttccttcattagga |
26452016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 26439821 - 26439752
Alignment:
| Q |
16 |
caaccatgatgattcctctgccttgcttgaattcaagaattcttttagtcttaatgtttccttcattagg |
85 |
Q |
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| T |
26439821 |
caaccatgatgattcctctgccttgcttgaattcaagaattcttttagtcctaatgtttccttcattagg |
26439752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 26451989 - 26451913
Alignment:
| Q |
83 |
aggacaaaatcatggaaaaatggtacgaattgttgcttgtgggatggagtgagttgtgacataaaatcaggctacgt |
159 |
Q |
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| T |
26451989 |
aggacaaaatcatggaaaaacggtacgaattgttgcttgtgggatggagttagttgtgacacaaaatcaggctacgt |
26451913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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