View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_high_4 (Length: 358)
Name: NF15756_high_4
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 13786299 - 13786170
Alignment:
| Q |
20 |
gggagctcagcagctgcttgttgagtagattcagctgaaaaaataagtaaagtaattcagatatgcatttagctaagttttttgcattataaaatattaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13786299 |
gggagctcagcagctgcttgttgagtagattcagctgaaaaaataagtaaagtaattcagatatgcatttagctaagttttttgcattataaaatattaa |
13786200 |
T |
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| Q |
120 |
gtgtttcaataattataacgtattaagcct |
149 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
13786199 |
gtgtttcaataattataaagtattaagcct |
13786170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 49282458 - 49282587
Alignment:
| Q |
20 |
gggagctcagcagctgcttgttgagtagattcagctgaaaaaataagtaaagtaattcagatatgcatttagctaagttttttgcattataaaatattaa |
119 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
49282458 |
gggagcttagcagctgcttgttgagtagattcagctgaaaagattagtaaagtaattctgatatgcatctagctaagttttttgcattataaaatattaa |
49282557 |
T |
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| Q |
120 |
gtgtttcaataattataacgtattaagcct |
149 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
49282558 |
gtgtttcaataattataaagtattaagcct |
49282587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 13786054 - 13785973
Alignment:
| Q |
273 |
tatttagcagaagtttgaaattggaatgagtgttatgctagcagactttgacatgtaatcttttgtcatttatattcttcgacat |
357 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |
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| T |
13786054 |
tattgagcagaagtttgaaattggaatgagtgttatgctagcagactttgaca---aatcttttgtcatttataatctttgacat |
13785973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 9e-58; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 13306745 - 13306616
Alignment:
| Q |
20 |
gggagctcagcagctgcttgttgagtagattcagctgaaaaaataagtaaagtaattcagatatgcatttagctaagttttttgcattataaaatattaa |
119 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
13306745 |
gggagctcagcagctacttgttgagtagattcagctgaaaaaataagtaaagtaatttagatatgcatttagctaaattttttgcattataaaatattaa |
13306646 |
T |
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| Q |
120 |
gtgtttcaataattataacgtattaagcct |
149 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
13306645 |
gtgtttcaataattataaagtattaagcct |
13306616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 273 - 357
Target Start/End: Complemental strand, 13306493 - 13306409
Alignment:
| Q |
273 |
tatttagcagaagtttgaaattggaatgagtgttatgctagcagactttgacatgtaatcttttgtcatttatattcttcgacat |
357 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
13306493 |
tatttagcagaagtttgaaattgaaatgagtgttatgctagcagactttgacatgtaatcttttgtcatttataatctttgacat |
13306409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 273 - 357
Target Start/End: Original strand, 14597544 - 14597628
Alignment:
| Q |
273 |
tatttagcagaagtttgaaattggaatgagtgttatgctagcagactttgacatgtaatcttttgtcatttatattcttcgacat |
357 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
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| T |
14597544 |
tatttagcagaagtttgaaattggaatgagcgttatgctagcagactttgacatgtaatcttttgtcatttataatctttgacat |
14597628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 14597379 - 14597421
Alignment:
| Q |
107 |
tataaaatattaagtgtttcaataattataacgtattaagcct |
149 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14597379 |
tataaaatattaagtgtttcaataattataaagtattaagcct |
14597421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 13935387 - 13935260
Alignment:
| Q |
20 |
gggagctcagcagctgcttgttgagtagattcagctgaaaaaataagtaaagtaattcagatatgcatttagctaagttttttgcattataaaatattaa |
119 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13935387 |
gggagctcagcagctgcttggtgagtagattcagctgaaaagattagtaaagtaattcagatatgcatttagctaagttttttgcattatgaaatattaa |
13935288 |
T |
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| Q |
120 |
gtgtttcaataattataacgtattaagc |
147 |
Q |
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|||||||||||||||||| ||||||||| |
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| T |
13935287 |
gtgtttcaataattataaagtattaagc |
13935260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 30 - 135
Target Start/End: Original strand, 10397409 - 10397515
Alignment:
| Q |
30 |
cagctgcttgttgagtagattcagctgaaaaaataagtaaagtaattcagatatgcatttagctaagttttttgcattataaaata-ttaagtgtttcaa |
128 |
Q |
| |
|
|||||| |||||||||||||||| || |||| || |||||||||||| ||||||| |||||||| ||| ||| |||||||||| || |||| | |||||| |
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| T |
10397409 |
cagctggttgttgagtagattcaactaaaaagattagtaaagtaatttagatatgtatttagctgagtatttcgcattataaagtatttaaatatttcaa |
10397508 |
T |
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| Q |
129 |
taattat |
135 |
Q |
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||||||| |
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| T |
10397509 |
taattat |
10397515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 16336423 - 16336471
Alignment:
| Q |
88 |
ttagctaagttttttgcattataaa-atattaagtgtttcaataattat |
135 |
Q |
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|||||||| |||||||||||||||| | |||||||||||||||||||| |
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| T |
16336423 |
ttagctaaattttttgcattataaagtttttaagtgtttcaataattat |
16336471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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