View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15756_high_9 (Length: 297)

Name: NF15756_high_9
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15756_high_9
NF15756_high_9
[»] chr7 (25 HSPs)
chr7 (3-297)||(29578153-29578447)
chr7 (14-297)||(29582322-29582605)
chr7 (157-293)||(8609464-8609600)
chr7 (226-297)||(27831356-27831427)
chr7 (25-74)||(8537454-8537503)
chr7 (232-297)||(27846587-27846652)
chr7 (195-297)||(8575911-8576013)
chr7 (147-297)||(6789049-6789199)
chr7 (195-297)||(8581285-8581387)
chr7 (196-296)||(7878215-7878315)
chr7 (226-293)||(3146880-3146947)
chr7 (226-297)||(8590254-8590325)
chr7 (226-297)||(17259857-17259928)
chr7 (226-297)||(17267555-17267626)
chr7 (21-74)||(8383577-8383630)
chr7 (232-297)||(8545255-8545320)
chr7 (193-297)||(10494855-10494959)
chr7 (257-296)||(8537683-8537722)
chr7 (27-74)||(8601394-8601441)
chr7 (21-74)||(8569725-8569778)
chr7 (3-68)||(8581096-8581161)
chr7 (264-297)||(8667073-8667106)
chr7 (264-297)||(13333849-13333882)
chr7 (138-179)||(17259764-17259805)
chr7 (138-179)||(17267467-17267508)
[»] chr2 (7 HSPs)
chr2 (155-297)||(43624957-43625099)
chr2 (193-297)||(16662473-16662577)
chr2 (193-296)||(16657999-16658102)
chr2 (147-297)||(12245887-12246037)
chr2 (226-296)||(14703024-14703094)
chr2 (226-297)||(11999024-11999095)
chr2 (257-297)||(7541873-7541913)
[»] chr5 (1 HSPs)
chr5 (193-297)||(28219501-28219605)
[»] chr1 (3 HSPs)
chr1 (226-297)||(15594650-15594721)
chr1 (226-290)||(52549434-52549498)
chr1 (202-297)||(34467269-34467364)
[»] chr8 (2 HSPs)
chr8 (235-297)||(12528129-12528191)
chr8 (232-285)||(43744438-43744491)
[»] chr4 (1 HSPs)
chr4 (147-297)||(35131993-35132143)


Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 3 - 297
Target Start/End: Complemental strand, 29578447 - 29578153
Alignment:
Q  3 aggaggagcagagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatct 102  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578447 aggaggaacaaagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatct 29578348  T
Q  103 acacttgtcttacatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578347 acacttgtcttacatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcg 29578248  T
Q  203 acaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29578247 acaagggtgtaatatctcgcaagaccaaatttggaacattcttaatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 29578153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 29582605 - 29582322
Alignment:
Q  14 agagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaacatggatggatacaccaagttggttatctacacttgtctt 113  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  || || ||||||| |||||||||||||||||||||    
T  29582605 agagactaaacaaacccagcaagttgttctcactggcttttattctctcaccctcataaacattaattgagacaccaaattggttatctacacttgtctt 29582506  T
Q  114 acatctatcctcagtcatcttaataggaattggagtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgta 213  Q
    |||||| || || ||||||||   |||||| ||||||||| |||||||||| |||||||||| ||||||||||||  |||||||||| ||||||||||||    
T  29582505 acatctttcttctgtcatcttggcaggaatgggagtgttcctaggaatcaccacactcatgatatctccttttgttgatataccaagtgacaagggtgta 29582406  T
Q  214 atatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||||  |||||  |||| |||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  29582405 atatcttgcaagataaaatctggaacattctcaatgccttcaatcagcaaagcagcctgcacagctgcaccataagcaacagcc 29582322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 293
Target Start/End: Original strand, 8609464 - 8609600
Alignment:
Q  157 ggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaa 256  Q
    ||||||| ||||||||| |||||||||||| || |||||||||| ||||| ||||||| ||||| ||  ||||| ||||||||    |||||||| |||     
T  8609464 ggaatcaatacactcatcacatctccttttatcgatataccaagtgacaaaggtgtaacatctcgcagcaccaagtttggaactgatttgatgccttcac 8609563  T
Q  257 tcaacaaagcagcctgcacagctgcaccataagcaac 293  Q
     ||||||||||||||| ||||| ||||||||||||||    
T  8609564 ccaacaaagcagcctggacagcagcaccataagcaac 8609600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 27831427 - 27831356
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||| |||||||||||| | ||| ||||| ||||||||||||||||||||||||||||| |||||||||||    
T  27831427 accaagtttggaacattcataatgtcatcactcaacaaagcagcctgcacagctgcaccaaaagcaacagcc 27831356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 8537454 - 8537503
Alignment:
Q  25 aaacccaacaagttgttctcactggcttttattctctcaccctcataaac 74  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8537454 aaacccaacaagttgttctcactggctttcattctctcaccctcataaac 8537503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 27846652 - 27846587
Alignment:
Q  232 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    |||||||||||||| ||| ||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  27846652 tttggaacattcttaatgtcatcactcaacaaagcagcctgcacagctgctccaaaagcaacagcc 27846587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 8575911 - 8576013
Alignment:
Q  195 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaaca 294  Q
    ||||| |||||| ||||||| |||||  || ||||| ||||||||||||||  |||| ||| ||||||||||||| || ||| | |||||||||||||||    
T  8575911 accaaacgacaacggtgtaacatctcgtaacaccaagtttggaacattcttactgccttcactcaacaaagcagcttggacaacagcaccataagcaaca 8576010  T
Q  295 gcc 297  Q
    |||    
T  8576011 gcc 8576013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 297
Target Start/End: Original strand, 6789049 - 6789199
Alignment:
Q  147 agtgttcttaggaatcactacactcatgacatctccttttg-tccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattctt 245  Q
    ||||||| |||||||||| ||||||||||||| |||| ||  | | | ||||||| ||||| ||||||| ||||  ||  ||||| ||||||||| ||||    
T  6789049 agtgttcctaggaatcaccacactcatgacatttcctattactgcct-taccaagagacaacggtgtaacatcttgcagcaccaagtttggaacactctt 6789147  T
Q  246 gatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
       ||| ||  |||||||||||||||| ||||||||||| ||||||||||||    
T  6789148 agagccttcgctcaacaaagcagcctggacagctgcaccgtaagcaacagcc 6789199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 195 - 297
Target Start/End: Original strand, 8581285 - 8581387
Alignment:
Q  195 accaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaaca 294  Q
    |||||| ||||| ||||||| ||||| ||| | ||| ||||||||| |||| ||||| ||| | | |||||||||||| | ||| |||||||||||||||    
T  8581285 accaagtgacaatggtgtaacatctcgcaaaatcaagtttggaacactcttaatgccttcactaaccaaagcagcctgaatagcagcaccataagcaaca 8581384  T
Q  295 gcc 297  Q
    |||    
T  8581385 gcc 8581387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 7878315 - 7878215
Alignment:
Q  196 ccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacag 295  Q
    ||||| ||||| || |||| ||||  ||| |||||||| ||||||||||| || ||||||   | || ||||||||| ||||||||||||||||||||||    
T  7878315 ccaagagacaatggagtaacatcttgcaacaccaaattaggaacattcttaataccatcacaaagcagagcagcctgaacagctgcaccataagcaacag 7878216  T
Q  296 c 296  Q
    |    
T  7878215 c 7878215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 293
Target Start/End: Original strand, 3146880 - 3146947
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaac 293  Q
    ||||| ||||||||||| || | | | ||| ||||||||||||| |||||||||||||||||||||||    
T  3146880 accaagtttggaacatttttaaagtcttcactcaacaaagcagcttgcacagctgcaccataagcaac 3146947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 8590254 - 8590325
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    |||||||| ||||||||||| || ||||||   | ||||||||| || ||||||||||||||||||||||||    
T  8590254 accaaattaggaacattcttaatcccatcacaaagcaaagcagcttgaacagctgcaccataagcaacagcc 8590325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 17259857 - 17259928
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||| |||||||||||||||| ||   || | |||||||||||||| ||||| ||||||||||||||||||    
T  17259857 accaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcc 17259928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 17267555 - 17267626
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||| |||||||||||||||| ||   || | |||||||||||||| ||||| ||||||||||||||||||    
T  17267555 accaagtttggaacattcttgacgcttccacttaacaaagcagcctgaacagcagcaccataagcaacagcc 17267626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 8383630 - 8383577
Alignment:
Q  21 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 74  Q
    ||||||||| ||||||||||||||| | ||||| | ||||||||||||||||||    
T  8383630 aaacaaacctaacaagttgttctcattagctttcaatctctcaccctcataaac 8383577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 297
Target Start/End: Original strand, 8545255 - 8545320
Alignment:
Q  232 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||| ||||||||  || | ||| ||| |||||||||||| ||||||||||||||||||||||||    
T  8545255 tttgggacattcttattgtcttcactcagcaaagcagcctggacagctgcaccataagcaacagcc 8545320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 10494959 - 10494855
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||| ||||| || |||| |||||  |  ||||| || || |||||||| | ||| ||| |||| | ||||||||| |||||||||||||||||||    
T  10494959 ataccaagtgacaatggggtaacatctcgtagcaccaagttcgggacattcttaaagccttcactcaaaatagcagcctgaacagctgcaccataagcaa 10494860  T
Q  293 cagcc 297  Q
    |||||    
T  10494859 cagcc 10494855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 8537683 - 8537722
Alignment:
Q  257 tcaacaaagcagcctgcacagctgcaccataagcaacagc 296  Q
    |||||||||||||||| ||||| |||||||||||||||||    
T  8537683 tcaacaaagcagcctggacagcagcaccataagcaacagc 8537722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 8601394 - 8601441
Alignment:
Q  27 acccaacaagttgttctcactggcttttattctctcaccctcataaac 74  Q
    ||||||||||||||||||||| ||||||| |||||| || ||||||||    
T  8601394 acccaacaagttgttctcacttgcttttaatctctcgccttcataaac 8601441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 8569725 - 8569778
Alignment:
Q  21 aaacaaacccaacaagttgttctcactggcttttattctctcaccctcataaac 74  Q
    ||||||||| | ||||||||| |||||  |||||| ||||||||||||||||||    
T  8569725 aaacaaaccaagcaagttgttgtcactatcttttaatctctcaccctcataaac 8569778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 8581096 - 8581161
Alignment:
Q  3 aggaggagcagagagacgaaacaaacccaacaagttgttctcactggcttttattctctcaccctc 68  Q
    ||||||| |||||| |  ||||||||||| ||||||||| ||||| ||| || |||||||||||||    
T  8581096 aggaggaacagagaaatcaaacaaacccagcaagttgttatcacttgctcttgttctctcaccctc 8581161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Original strand, 8667073 - 8667106
Alignment:
Q  264 agcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||||||| ||||||||||||||||||||||||    
T  8667073 agcagcctgaacagctgcaccataagcaacagcc 8667106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 297
Target Start/End: Complemental strand, 13333882 - 13333849
Alignment:
Q  264 agcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||||||| ||||||||||||||||||||||||    
T  13333882 agcagcctgaacagctgcaccataagcaacagcc 13333849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 17259764 - 17259805
Alignment:
Q  138 aggaattggagtgttcttaggaatcactacactcatgacatc 179  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17259764 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17259805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 17267467 - 17267508
Alignment:
Q  138 aggaattggagtgttcttaggaatcactacactcatgacatc 179  Q
    |||||||| ||||||| |||||||||| ||||||||||||||    
T  17267467 aggaattgaagtgttcctaggaatcaccacactcatgacatc 17267508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 297
Target Start/End: Original strand, 43624957 - 43625099
Alignment:
Q  155 taggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatc 254  Q
    |||||||||| |||||||||||| |||| ||  |  | |||||||| ||||| || |||| ||||| ||  ||||| |||||||||||||| ||||| |     
T  43624957 taggaatcaccacactcatgacacctcccttgtttaagataccaagtgacaaaggggtaacatctcgcagcaccaattttggaacattcttaatgccttt 43625056  T
Q  255 aatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    | |||| | ||||||||| ||||||||||||||||||||||||    
T  43625057 actcaaaatagcagcctggacagctgcaccataagcaacagcc 43625099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 297
Target Start/End: Complemental strand, 16662577 - 16662473
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||| ||||| || ||||  |||| ||  ||||| |||||||||| ||| ||||| ||| |||||| |||||| ||||||||||| ||||||||||    
T  16662577 ataccaagtgacaatggggtaacgtctcgcagcaccaagtttggaacatccttaatgccttcactcaacacagcagcttgcacagctgccccataagcaa 16662478  T
Q  293 cagcc 297  Q
    |||||    
T  16662477 cagcc 16662473  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 296
Target Start/End: Complemental strand, 16658102 - 16657999
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||||||||| || |||| ||||| ||| ||||||| ||| |||||||| | ||| ||| |||| | |||||| || ||||||||||| |||||||    
T  16658102 ataccaagcgacaatggggtaacatctctcaacaccaaatctgggacattcttaaagccttcactcaaaatagcagcttgaacagctgcaccgtaagcaa 16658003  T
Q  293 cagc 296  Q
    ||||    
T  16658002 cagc 16657999  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 297
Target Start/End: Complemental strand, 12246037 - 12245887
Alignment:
Q  147 agtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttg 246  Q
    ||||||| | |||||||| |||||||||||||| ||| || |  |  ||||||  ||||| || |||| |||   ||| ||||||||||||||||||||     
T  12246037 agtgttccttggaatcaccacactcatgacatcccctattattgacctaccaatggacaaaggagtaacatcctgcaacaccaaatttggaacattctta 12245938  T
Q  247 atgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    |   | | | ||||||||||||| || |||||||| |||||||||||||||    
T  12245937 acatctttactcaacaaagcagcttgaacagctgccccataagcaacagcc 12245887  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 14703024 - 14703094
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagc 296  Q
    ||||| || ||||||||||||| | | ||| |||||||||||||||| |||||||| |||||||| |||||    
T  14703024 accaacttcggaacattcttgacgtcttcactcaacaaagcagcctgaacagctgccccataagctacagc 14703094  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 11999024 - 11999095
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    |||||||||||||||||||| |   | ||| ||||||||||||| || |||||||| |||||||| ||||||    
T  11999024 accaaatttggaacattcttaacatcttcactcaacaaagcagcttgaacagctgccccataagctacagcc 11999095  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 7541873 - 7541913
Alignment:
Q  257 tcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||||| |||||||| |||||||| |||||||||||||||    
T  7541873 tcaacaatgcagcctgaacagctgccccataagcaacagcc 7541913  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 28219501 - 28219605
Alignment:
Q  193 ataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaa 292  Q
    |||||||| ||||| ||||||| ||||  ||  ||||| || ||||| || || | ||| ||| ||||||||||||||||||||||||||||||||||||    
T  28219501 ataccaagagacaaaggtgtaacatcttgcagcaccaacttcggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcaccataagcaa 28219600  T
Q  293 cagcc 297  Q
    |||||    
T  28219601 cagcc 28219605  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 15594650 - 15594721
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||| ||||||||||| || |  || ||| |||||||||||||||| ||||||||||||||||||||||||    
T  15594650 accaagtttggaacatttttaaaaccttcactcaacaaagcagcctggacagctgcaccataagcaacagcc 15594721  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 52549498 - 52549434
Alignment:
Q  226 accaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagc 290  Q
    ||||| |||||||||||||  ||||| ||| ||||||| |||||||| |||||||| ||||||||    
T  52549498 accaactttggaacattctgaatgccttcactcaacaatgcagcctgaacagctgcgccataagc 52549434  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 297
Target Start/End: Complemental strand, 34467364 - 34467269
Alignment:
Q  202 gacaagggtgtaatatctcacaagaccaaatttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||| ||||||| ||||| ||  ||||| ||||||||||| || | ||| | | ||||||||||||| |||||||||||  ||||||| ||||||    
T  34467364 gacaatggtgtaacatctcgcagcaccaagtttggaacattgttaaagcctttactcaacaaagcagcttgcacagctgcgacataagcgacagcc 34467269  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 297
Target Start/End: Original strand, 12528129 - 12528191
Alignment:
Q  235 ggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    |||||| |||| ||||| ||| |||||||||||||||| ||||| ||||||||||||||||||    
T  12528129 ggaacagtcttcatgccttcactcaacaaagcagcctgaacagcggcaccataagcaacagcc 12528191  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Original strand, 43744438 - 43744491
Alignment:
Q  232 tttggaacattcttgatgccatcaatcaacaaagcagcctgcacagctgcacca 285  Q
    |||||||| || || | ||| ||| |||||||||||||||||||||||||||||    
T  43744438 tttggaacttttttaaagccttcactcaacaaagcagcctgcacagctgcacca 43744491  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 297
Target Start/End: Original strand, 35131993 - 35132143
Alignment:
Q  147 agtgttcttaggaatcactacactcatgacatctccttttgtccatataccaagcgacaagggtgtaatatctcacaagaccaaatttggaacattcttg 246  Q
    ||||||| |||||||||| ||| |||||| |||||||  | |  |  ||||||| ||||| ||||||| |||    || ||||| ||||||||||| ||     
T  35131993 agtgttcctaggaatcaccacattcatgatatctcctactattgacctaccaagagacaaaggtgtaacatcctgtaacaccaactttggaacatttttt 35132092  T
Q  247 atgccatcaatcaacaaagcagcctgcacagctgcaccataagcaacagcc 297  Q
    ||||| | | |||||||||||||||| || ||||| |||||||| ||||||    
T  35132093 atgcctttactcaacaaagcagcctgaactgctgccccataagctacagcc 35132143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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