View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_low_10 (Length: 313)
Name: NF15756_low_10
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_low_10 |
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| [»] scaffold2028 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 62 - 300
Target Start/End: Original strand, 12829901 - 12830136
Alignment:
| Q |
62 |
taactgacaaattcaacttcatgttaagaggcaatctcaaactccatgaaagcgagaaaataagcttgcaatgtacaaagctatgaagaagaaaagaaaa |
161 |
Q |
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| T |
12829901 |
taactgacaaattcaacttcatgttaagaggcaatctcaaactccatgaaagcgagaaaataagcttgcaatgtacaaagctatgaagaagaaaagaaaa |
12830000 |
T |
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| Q |
162 |
tgggaaaagggaaactttattattggaaagtgtaactgatacaatggataactatagctatatatagagtgtagtagaatcacaactctaactcaactat |
261 |
Q |
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| T |
12830001 |
tgggaaaagggaaactttattattggaaagtgtaactgatacaatggataactatagctatatatagagt---gtagaatcacaactctaactcaactat |
12830097 |
T |
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| Q |
262 |
agttacttaactaactgtaactaactgacatgaataact |
300 |
Q |
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| T |
12830098 |
agttacttaactaactgtaactaactgacatgaataact |
12830136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 83 - 262
Target Start/End: Original strand, 25973853 - 25974028
Alignment:
| Q |
83 |
tgttaagaggcaatctcaaactccatgaaagcgagaaaataagcttgcaatgtacaaagctatgaagaagaaaagaaaatgggaaaagggaaactttatt |
182 |
Q |
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||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||| |
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| T |
25973853 |
tgttaagaggcaatctcaatccccatgaaagcaagaaaataagcttgcaatgtgcaaagctatgaagaagaaaagaaaatgagaaaa-ggaaaatttatt |
25973951 |
T |
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| Q |
183 |
attggaaagtgtaactgatacaatggataactatagctatatatagagtgtagtagaatcacaactctaactcaactata |
262 |
Q |
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| T |
25973952 |
attggaaagtgtaactgatacaatggattactatagctatatatagagt---gtagaatcacaactctaactcaactata |
25974028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2028 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold2028
Description:
Target: scaffold2028; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 83 - 300
Target Start/End: Complemental strand, 470 - 257
Alignment:
| Q |
83 |
tgttaagaggcaatctcaaactccatgaaagcgagaaaataagcttgcaatgtacaaagctatgaagaagaaaagaaaatgggaaaagggaaactttatt |
182 |
Q |
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|||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||| |||||||||||||||||||||| ||||| ||||| |||||| |
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| T |
470 |
tgttaagaggcaatctcaaactccgtgaaagcaagcaaataggcttgcaatgtgcaaaactatgaagaagaaaagaaaatgagaaaaaggaaa-tttatt |
372 |
T |
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| Q |
183 |
attggaaagtgtaactgatacaatggataactatagctatatatagagtgtagtagaatcacaactctaactcaactatagttacttaactaactgtaac |
282 |
Q |
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| T |
371 |
agtggaaagtgtaactgatacaatggatcactatagctatatatagagt---gtagaatcacaacactaactcaactatagttacttaactaactttaac |
275 |
T |
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| Q |
283 |
taactgacatgaataact |
300 |
Q |
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|||||||||||||||||| |
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| T |
274 |
taactgacatgaataact |
257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 14973490 - 14973435
Alignment:
| Q |
95 |
atctcaaactccatgaaagcgagaaaataagcttgcaatgtacaaagctatgaagaaga |
153 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| |
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| T |
14973490 |
atctcaaactccatgaaag-tagaaaataagcttgcaa--tacatagctatgaagaaga |
14973435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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