View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_low_12 (Length: 295)
Name: NF15756_low_12
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 2022468 - 2022202
Alignment:
| Q |
19 |
cctataatcactatgcttgtgcaatagttaatctnnnnnnnttaaatattgcatctaacatacctgcatactgatggtaaatcttctggattaggagaat |
118 |
Q |
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| T |
2022468 |
cctataatcactatgcttgtgcaatagttaatctaaaaaaattaaatattgcatctaacatacctgcatactgatggtaaatcttctggattaggagaat |
2022369 |
T |
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| Q |
119 |
tcggagccataaaacagtaaaaggtatccctccaagtagcagctggtgaactataaagatcaaaattactattataaaccaaaggcttcactggatcacg |
218 |
Q |
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| T |
2022368 |
tcggagccataaaacagtaaaaggtatccctccaagtagcagctggtgaactataaagatcaaaattactattataaaccaaaggcttcactggatcacg |
2022269 |
T |
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| Q |
219 |
tgtgtataattctcttttcacctcagaatcttgctcaaagaatctaaccactccattcttcatctca |
285 |
Q |
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| T |
2022268 |
tgtgtataattctcttttcacctcagaatcttgctcaaagaatctaaccactccattcttcatctca |
2022202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Complemental strand, 2033010 - 2032973
Alignment:
| Q |
160 |
gctggtgaactataaagatcaaaattactattataaac |
197 |
Q |
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| T |
2033010 |
gctggtgagctataaatatcaaaattactattataaac |
2032973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 28736621 - 28736679
Alignment:
| Q |
142 |
gtatccctccaagtagcagctggtgaactataaagatcaaaattactattataaaccaa |
200 |
Q |
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| T |
28736621 |
gtatccctccaattaagtgctggtgaactatacaaatcaaaattactattataaaccaa |
28736679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 28743247 - 28743305
Alignment:
| Q |
142 |
gtatccctccaagtagcagctggtgaactataaagatcaaaattactattataaaccaa |
200 |
Q |
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| T |
28743247 |
gtatccctccaattaagcgctggtgaactatacaaatcaaaattactattataaaccaa |
28743305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 275
Target Start/End: Original strand, 28786194 - 28786309
Alignment:
| Q |
160 |
gctggtgaactataaagatcaaaattactattataaaccaaaggcttcactggatcacgtgtgtataattctcttttcacctcagaatcttgctcaaaga |
259 |
Q |
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|||| |||||||||||||| |||||| ||||| || || ||| ||| ||||||||| | ||||| ||| ||||||| ||| |||||| ||||||| |
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| T |
28786194 |
gctgatgaactataaagattaaaattgctattgtatgaaaatggcctcattggatcacgagaatataactcttttttcacttcaacatcttgttcaaaga |
28786293 |
T |
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| Q |
260 |
atctaaccactccatt |
275 |
Q |
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|||||| ||||||||| |
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| T |
28786294 |
atctaatcactccatt |
28786309 |
T |
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