View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_low_13 (Length: 276)
Name: NF15756_low_13
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 33817276 - 33817522
Alignment:
| Q |
18 |
atggtacccaacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcaggggcatttctaaaccggtggat |
117 |
Q |
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| T |
33817276 |
atggtacccaacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcacgggcatttctaaactggtggat |
33817375 |
T |
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| Q |
118 |
aatggtgatttagagttgatgtcaagcactagaagctgtgatgttccatttcatactttgtatgcagatcacataatgatatttcgcaatgggaaggcat |
217 |
Q |
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| T |
33817376 |
aatggtgatttagagttgatgtcaagcactagaagttgtgatgttccatttcatactttgtatgcagatcacataatgatatttagcaatgggaaggcat |
33817475 |
T |
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| Q |
218 |
cttgcataaattcactgataaaccttttcactagatatgcacaggtt |
264 |
Q |
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| T |
33817476 |
cttgcataaattcactgataaaccttttcactagatatgcacaggtt |
33817522 |
T |
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