View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15756_low_16 (Length: 273)

Name: NF15756_low_16
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15756_low_16
NF15756_low_16
[»] chr2 (3 HSPs)
chr2 (1-273)||(37155608-37155880)
chr2 (22-267)||(37150503-37150748)
chr2 (85-250)||(37161293-37161458)


Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 37155608 - 37155880
Alignment:
Q  1 aacaaacaactcataaatgtgtgtacctgattaatctcatgttgtggcatataaaggccatcgagggtgccggtgattgttctgcgaagataaggatcaa 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37155608 aacaaacaactcataaatgtatgtacctgattaatctcatgttgtggcatataaaggccatcgatggtgccggtgattgttctgcgaagataaggatcaa 37155707  T
Q  101 cggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37155708 cggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcgg 37155807  T
Q  201 aacaccttcaggacaatattcagctaagtaccattctctgctttctaccaaattttccatgatttttctcttc 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37155808 aacaccttcaggacaatattcagctaagtaccattctctgctttctaccatattttccatgatttttctcttc 37155880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 22 - 267
Target Start/End: Original strand, 37150503 - 37150748
Alignment:
Q  22 tgtacctgattaatctcatgttgtggcatataaaggccatcgagggtgccggtgattgttctgcgaagataaggatcaacggagagaaggagagtttcga 121  Q
    |||||||||||||  | || |||||| ||  ||||||| || ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||    
T  37150503 tgtacctgattaagttgatattgtggaatgaaaaggccttcaagggtgccggtgattgttccgcgaagatatggatcaacagagagaaggagagtttcga 37150602  T
Q  122 cggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaagatgatctgaggtcggaacaccttcaggacaatattc 221  Q
    ||  |||||||| |||||||||||| || | |||||||||| |||||||||| ||||||||||||||||| || || |||||||| |||||| | ||| |    
T  37150603 cgattagatggtcatcagggattgattcatgggcaagagaaagagaaacagtgcggagtttaagatgatccgacgttggaacaccctcaggagagtatgc 37150702  T
Q  222 agctaagtaccattctctgctttctaccaaattttccatgattttt 267  Q
    ||||| |||||||||| || |||||||||||| | ||||| |||||    
T  37150703 agctacgtaccattctttgttttctaccaaatctcccatgtttttt 37150748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 37161293 - 37161458
Alignment:
Q  85 cgaagataaggatcaacggagagaaggagagtttcgacggctagatggttatcagggattgaatcgtcggcaagagaacgagaaacagtccggagtttaa 184  Q
    ||||||||||| |||||||| |||||||||||||| || |||||||| ||||||||||||||||| |||||||||||| |||| ||||| ||||||||||    
T  37161293 cgaagataagggtcaacggaaagaaggagagtttcaactgctagatgattatcagggattgaatcatcggcaagagaaagagacacagtacggagtttaa 37161392  T
Q  185 gatgatctgaggtcggaacaccttcaggacaatattcagctaagtaccattctctgctttctacca 250  Q
    ||||||||||||| |||||||||||||   ||||| ||||||||||||||||||||||||||||||    
T  37161393 gatgatctgaggttggaacaccttcagtggaatatccagctaagtaccattctctgctttctacca 37161458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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