View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_low_19 (Length: 258)
Name: NF15756_low_19
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 16390757 - 16391014
Alignment:
| Q |
1 |
tttgttcatctctcaattatgccttggcttcaactcatcataaataagactcttgaatttgtacttcaaattctccaacacaataacatcatagaagtca |
100 |
Q |
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| T |
16390757 |
tttgttcatctctcaattatgccttggcttcaactcatcataaataagactcttgaatttgtacttcaaattctccaacacaataacatcatagaagtca |
16390856 |
T |
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| Q |
101 |
acatggtccttgtaaccagcaccaattttgaggtggtagaatgtccctacctcatctctgagagtctttgtctcgccactggatatactcttcaacttat |
200 |
Q |
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| T |
16390857 |
acatggtccttgtaaccagctccaattttaaggtggtagaatgtccctacctcatctatgagagtctttgtctcgccactggagatactcttcaacttat |
16390956 |
T |
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| Q |
201 |
agtctttatgagatggcacattaatctcagcaacagcataggtagcaatatcaatcac |
258 |
Q |
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| T |
16390957 |
agtctttatgagatggcacatcaatctcagcaacagcataggtagcaatatcaatcac |
16391014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1996272 - 1996186
Alignment:
| Q |
1 |
tttgttcatctctcaattatgccttggcttcaactcatcataaataagactcttgaatttgtacttcaaattctccaacacaataac |
87 |
Q |
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||||||||||||||||| ||| | || ||| ||||||||||||||||||| |||||||||| || |||||||||||||||||||| |
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| T |
1996272 |
tttgttcatctctcaatgatgttgtagcctcatctcatcataaataagactcctgaatttgtattttaaattctccaacacaataac |
1996186 |
T |
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