View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15756_low_22 (Length: 247)
Name: NF15756_low_22
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 16137682 - 16137903
Alignment:
| Q |
1 |
tctcgtcccattttaagcgggcttagacgaggtaggcctaaacggggcgggccagcccgcttgccatccctaatccaaatcgaatatgactnnnnnnngg |
100 |
Q |
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| T |
16137682 |
tctcgtcccgttttaaacgggcttagacgaggtaggcctaaacgggacgggccggcccgcttgccatccctaatccaaattgaatatgactaaaaaaagg |
16137781 |
T |
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| Q |
101 |
taaaacttaagtcaatggtaaagaaaagcaacaaaatattctttatttatttcgatgatcataataacatatannnnnnnaatcatgacatatacttatt |
200 |
Q |
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| T |
16137782 |
taaaacttaagtcaatggtaaagaaaagcaacaaaatattctttatttatttcgatgatcataa---catatacttttttaatcatgacata--cttatt |
16137876 |
T |
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| Q |
201 |
tcttatttcaaaataggtaatgtattc |
227 |
Q |
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| T |
16137877 |
tcttatttcaaaagaggtaatgtattc |
16137903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 16116483 - 16116646
Alignment:
| Q |
1 |
tctcgtcccattttaagcgggcttagacgaggtaggcctaaacggggcgggccagcccgcttgccatccctaatccaaatcgaatatgactnnnnnnngg |
100 |
Q |
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| T |
16116483 |
tctcgtcccgttttaagcgggcttagacgtggtaggcttaaacgaggcgggccggcccgcttgccatccctaatccaaatcgaatatgactaaaaaaagg |
16116582 |
T |
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| Q |
101 |
taaaacttaagtcaatggtaaagaaaagcaacaaaatattctttatttatttcgatgatcataa |
164 |
Q |
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| T |
16116583 |
caaaacttaagtcaatggtaaagaaaagcaacaaaatattctatatttatttcgatgatcataa |
16116646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 164
Target Start/End: Original strand, 16114400 - 16114455
Alignment:
| Q |
109 |
aagtcaatggtaaagaaaagcaacaaaatattctttatttatttcgatgatcataa |
164 |
Q |
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| T |
16114400 |
aagtcaacggtaaagagaagcaacaaaatattctatatttatttcaatgatcataa |
16114455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 182 - 221
Target Start/End: Original strand, 16116640 - 16116679
Alignment:
| Q |
182 |
atcatgacatatacttatttcttatttcaaaataggtaat |
221 |
Q |
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| T |
16116640 |
atcataacatatacttatttgttatttcaaaataggtaat |
16116679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 16102003 - 16102035
Alignment:
| Q |
181 |
aatcatgacatatacttatttcttatttcaaaa |
213 |
Q |
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| T |
16102003 |
aatcatgacatatacttatttcttatttaaaaa |
16102035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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