View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15756_low_24 (Length: 233)
Name: NF15756_low_24
Description: NF15756
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15756_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 219
Target Start/End: Complemental strand, 22944370 - 22944170
Alignment:
| Q |
19 |
atttatatggttttctagtgaaggaattatcagtgtttttgtttcattattgatttggagagttaggagctcttgccttatgtttagtatcattgattgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22944370 |
atttatatggttttctagtgaaggaattatcagtgtttttgtttcattattgatttggagagttaggagctcttgccttatgtttagtatcattgattgt |
22944271 |
T |
|
| Q |
119 |
tgtggtgatctagttattggttttaggagtgtttttagactattctaattgttctttgtgatcttctgtttgcacatcttgttatatgttattagtatta |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22944270 |
tgtggtgatctagttattggctttaggagtgtttttagactattctaattgttctttgtgatcttctgtttgcacatcttgttataggttattagtatta |
22944171 |
T |
|
| Q |
219 |
t |
219 |
Q |
| |
|
| |
|
|
| T |
22944170 |
t |
22944170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University