View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15757_high_1 (Length: 562)
Name: NF15757_high_1
Description: NF15757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15757_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 13 - 545
Target Start/End: Original strand, 49252125 - 49252655
Alignment:
| Q |
13 |
ataatacttttaaacattgaatgtatcgatgcaaaataatactaaatgtattaaattattctataaattatagttaatactattaggttgattattcatg |
112 |
Q |
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| T |
49252125 |
ataatacttttaaacactgaatgtatcgatgcaaaataatactaaatgtattaaattattctataaattatagttaatactattaggttgattattaatg |
49252224 |
T |
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| Q |
113 |
taaaacaatcatgaaagatgcttggatcaaacccagagccaattttatgaaatgcaatattgatgcctctttttgtcacactcacaacatggtgggaatt |
212 |
Q |
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| T |
49252225 |
tagaacaatcatgaaagatgcttggatcaaacccagagccaattttatgaaatgcaatattgatgcctctttttgtcacactcacaacatggtgggaatt |
49252324 |
T |
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| Q |
213 |
ggcattttaattcgtgatgatcgtggccattttgtccaagccaaaactatccaagttacacctcttttagaggttcaagaaggaaaggctaagggtctct |
312 |
Q |
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| T |
49252325 |
ggcattttaattcgtgatgatcgtggccattttgtccaagccaaaactatccaagttacacctcttttacaggttcaagaaggaaaggctaagggtctct |
49252424 |
T |
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| Q |
313 |
tacatgctatgaattgggttattgagttgggtatggttaatgttgtttttgagcttgatgatgagactgtggttgatgcttttaatcatcccaaagatga |
412 |
Q |
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| T |
49252425 |
tacatgctatgaattgggttattgagttgggtatggttaatgttgtttttgagcttgatgatgagac--tggttgatgcttttaatcatcccaaagatga |
49252522 |
T |
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| Q |
413 |
tacttccctttttggctcaattatttaccaatgtcgtaatttagttgatcaaagtttaccaaactcaacagttgtgtttactaagaggatagcaaataga |
512 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
49252523 |
tacttccctttttggctcaactatttaccaatgtcgtaatttagttgatcaaagtttaccaaactcaacagttgtgtttactaagaggaaagcaaataga |
49252622 |
T |
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| Q |
513 |
gcagctggtgtattagcaagtgttgctttagat |
545 |
Q |
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| T |
49252623 |
gcagctggtgtattagctagtgttgctttagat |
49252655 |
T |
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