View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15757_low_4 (Length: 400)
Name: NF15757_low_4
Description: NF15757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15757_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 11262162 - 11262559
Alignment:
| Q |
1 |
agtaaactttcaaaaattcgagatcttcttcatggaggttagatcaaatgtagaaaatattttccaatttaataatgcattggacattgacaagtacttg |
100 |
Q |
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| T |
11262162 |
agtaaactttcaaaaattcgagatcttcttcatggaggttagatcaaatgtagaaaatattttccaagttaataatgcaatggtcattgacaagtacttg |
11262261 |
T |
|
| Q |
101 |
ggtctcccatctttgatatgtaagagtaagaatgacaagtccaaattcaacaaggatcacgtgtagaggaagattaattcgtgaggtggtcgctcattat |
200 |
Q |
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| T |
11262262 |
ggtctcccatctttgatatgtaagagtaagaatgacaagtccaaattcaacaaggatcacgtgtagaggaagattaattcgtgaggtggtcgctcattat |
11262361 |
T |
|
| Q |
201 |
ccaaagcgagtaaagaggtaatgatcaagtccgtgcttcaagctattcaaccttacttcataagtatcattttagtcccttcttcattaggggatggaat |
300 |
Q |
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| T |
11262362 |
ccaaagcgagtaaagaggtaatgattaagtccgtgcttcaagctattcaaccttacttcataagtatcattttagtcccttcttcattaggggatgtaat |
11262461 |
T |
|
| Q |
301 |
aggnnnnnnntcatgaattcttttttgtggggtaaatggaggaagcctaaataaggaaatcaagtggttatcttggagcaagcttgatttgaaagagaa |
399 |
Q |
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||| ||||||||||||||| ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11262462 |
aggtaaaaaatcatgaattctttttggtggggt-aacggaggaggcctaaataaggaaatcaagtggttatcttggagcaagcttgatttgaaagagaa |
11262559 |
T |
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