View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15757_low_7 (Length: 354)
Name: NF15757_low_7
Description: NF15757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15757_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 11262879 - 11262556
Alignment:
| Q |
18 |
atttctcaataaagcttaaagatcaaaatttgtactatgcatatatattattgaaggttgcaccaaagctccatttgctagccatctatcatgaaaaact |
117 |
Q |
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| T |
11262879 |
atttctcaataaagcttaaagatcaaaatttgtactatgcatatatattattgaaggttgcaccaaagctccatttgctagccatctatcatgaaaaact |
11262780 |
T |
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| Q |
118 |
cgaatgttcaccctcaatactaatcttccacattgttccttaccttaccataggtatagcctcataaatactcttccacataaaatttgagttgttcctc |
217 |
Q |
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| T |
11262779 |
cgaatgttaaccctcaatactaatcttccacattgctccttaccttaccataggtatagcctcataaatactcttccacataaaatttgagttgttcctc |
11262680 |
T |
|
| Q |
218 |
ttttttcacctccaacacaaacgagagctaccaaaaaatttggattggttaccaacctccacacttgttttcccaataatgctaagttggacatgtagag |
317 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11262679 |
ttttttcacctccaacacaaac--gagctaccaaaaaatttggattggttaccaacctccacacttgttttcccaataatgctaagttggacatgtagag |
11262582 |
T |
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| Q |
318 |
atccttaaaacccataccaccattct |
343 |
Q |
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| T |
11262581 |
atccttaaaacccataccaccattct |
11262556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 6956269 - 6956327
Alignment:
| Q |
139 |
aatcttccacattgttccttaccttaccataggtatagcctcataaatactcttccaca |
197 |
Q |
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| T |
6956269 |
aatcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccaca |
6956327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 6466979 - 6466921
Alignment:
| Q |
139 |
aatcttccacattgttccttaccttaccataggtatagcctcataaatactcttccaca |
197 |
Q |
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| T |
6466979 |
aatcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccaca |
6466921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 6751546 - 6751604
Alignment:
| Q |
139 |
aatcttccacattgttccttaccttaccataggtatagcctcataaatactcttccaca |
197 |
Q |
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|||||||||| ||||||||| | | ||||| ||||||||||||| |||||||||||||| |
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| T |
6751546 |
aatcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccaca |
6751604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 197
Target Start/End: Original strand, 22009702 - 22009759
Alignment:
| Q |
140 |
atcttccacattgttccttaccttaccataggtatagcctcataaatactcttccaca |
197 |
Q |
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||||||||| ||||||||| | | ||||| ||||||||||||| |||||||||||||| |
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| T |
22009702 |
atcttccaccttgttccttgcttgaccatgggtatagcctcatgaatactcttccaca |
22009759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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