View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15757_low_8 (Length: 331)
Name: NF15757_low_8
Description: NF15757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15757_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 38709179 - 38709477
Alignment:
| Q |
18 |
tgtggaaaagaatggagagattgttaatgctgaaactgggatgaagtcagatattttgatacagataccaacttgaccaaaaactgtcggtgaaaatgga |
117 |
Q |
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| T |
38709179 |
tgtggaaaagaatggagagattgttaatgctgaaactggggtgaagtcagatattttgatacagataccaacttgaccaaaaactgtcggtgaaaatgga |
38709278 |
T |
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| Q |
118 |
tatgaggtcattggtgatgatgaaatcgaagattaagctttattagttgtaactaagtttttaagtgaatgtcttgggctatgtcactttagttcttgaa |
217 |
Q |
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| T |
38709279 |
tatgaggtcattggtgatgatgaaacggaagattaagctttattagttgtaactaagtttttaagtgaatgtcttgggctatgtcactttagttcttgaa |
38709378 |
T |
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| Q |
218 |
tgcatcgaacttgcaaacatattcacaagtatctcttttattagttcttttggccctcaaatatgttttaacttttaagggaatcaatttagtagatat |
316 |
Q |
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| T |
38709379 |
tgcatcgaaattgcaaacatattcacaagtatctcttttattagttcttttggccctcaaatatgttttaacttttaagggaatcaatttagtagatat |
38709477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 22 - 160
Target Start/End: Original strand, 10047220 - 10047358
Alignment:
| Q |
22 |
gaaaagaatggagagattgttaatgctgaaactgggatgaagtcagatattttgatacagataccaacttgaccaaaaactgtcggtgaaaatggatatg |
121 |
Q |
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| T |
10047220 |
gaaaagaatggagggattgtaaatgctgaaactggggtgaagtcagatattttgattcagataccaaatggaccaaaaattgtcggtgaaaatggatatg |
10047319 |
T |
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| Q |
122 |
aggtcattggtgatgatgaaatcgaagattaagctttat |
160 |
Q |
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| T |
10047320 |
aggtcattggcgatgatgaaatggaagagtaagctttat |
10047358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 270
Target Start/End: Original strand, 10047360 - 10047424
Alignment:
| Q |
207 |
tagttcttgaatgcatcgaacttgcaaacatatt-cacaagtatctcttttattagttcttttgg |
270 |
Q |
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|||| |||||||| |||||| |||||||||||| |||||||||||||||||| |||| |||||| |
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| T |
10047360 |
tagtccttgaatgtatcgaaattgcaaacatatcgcacaagtatctcttttatcagttgttttgg |
10047424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 45468912 - 45468976
Alignment:
| Q |
22 |
gaaaagaatggagagattgttaatgctgaaactgggatgaagtcagatattttgatacagatacc |
86 |
Q |
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| T |
45468912 |
gaaaagaatggagggattgttaatgctgaaactggggtgaagtctgatatattgattcagatacc |
45468976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 739584 - 739517
Alignment:
| Q |
33 |
agagattgttaatgctgaaactgggatgaagtcagatattttgatacagataccaacttgaccaaaaa |
100 |
Q |
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| T |
739584 |
agagattgttaatgctgaaatcggggtgaagtcggatattttgattcagataacaaatggaccaaaaa |
739517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 262
Target Start/End: Complemental strand, 25078815 - 25078763
Alignment:
| Q |
210 |
ttcttgaatgcatcgaacttgcaaacatattcacaagtatctcttttattagt |
262 |
Q |
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| T |
25078815 |
ttcttgaatgtatcgaaattgcaaacacatccacgagtgtctcttttattagt |
25078763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 215 - 288
Target Start/End: Original strand, 535745 - 535818
Alignment:
| Q |
215 |
gaatgcatcgaacttgcaaacatattcacaagtatctcttttattagttcttttggccctcaaatatgttttaa |
288 |
Q |
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| T |
535745 |
gaatgtatcgaaattgcaaacatattcacaagtgtctaatttattagtcactttggtcctcaaatttgttttaa |
535818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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