View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15758_high_26 (Length: 220)
Name: NF15758_high_26
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_high_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 2247880 - 2247831
Alignment:
| Q |
13 |
atatcctctctattctccgagtcatcacaacacaacactctatgcctatg |
62 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2247880 |
atatcctctctattctccgagtcatcacaacacaacactctatgcctatg |
2247831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 2247750 - 2247704
Alignment:
| Q |
159 |
gagaaagagcaaatttatccaaaacccaaaaatggaaaactattcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2247750 |
gagaaagagcaaatttatccaaaacccaaaaatggaaaactattcat |
2247704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University