View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_high_7 (Length: 460)
Name: NF15758_high_7
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 16 - 423
Target Start/End: Complemental strand, 43430450 - 43430042
Alignment:
| Q |
16 |
gttttataagtagagattgatggagtaaaatgcttgatttttgcttgatttttgttatactgattaaatatcattcnnnnnnnctattaactactttttg |
115 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43430450 |
gttttataattagagattgatggagtaaaatgcttgatttttgcttgatttttgttatactgattaaatatcattcaaaaaaactattaactactttttg |
43430351 |
T |
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| Q |
116 |
aatttatgtcgatttaggttcaatttttcagtgaataagatgatggcaatgtgagaaatggtcaagcatggatgcttctcaaggaaatttatatgctaga |
215 |
Q |
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|||||| || ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43430350 |
aatttacgtggatttaggttcaatttt-cagtgaataaggtgatggcaatgtgtgaaatggtcaagcatggatgcttctcaaggaaatttatatgctaga |
43430252 |
T |
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| Q |
216 |
caacaaacagagaataagaacttgaa---taagaaaaaatagattttatatgctgctgtgtttgatagcagtcctgtgcagagttgcagtttttctgtga |
312 |
Q |
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| T |
43430251 |
caacaaacagagaataagaacttgaagaataagaaaaaatagattttatgtgctgctgtgtttgacagcagtcctgtgcagagttgcagtttttccgtga |
43430152 |
T |
|
| Q |
313 |
tgccactgcagttgcgatttggtgttgtgtttgggagccttgctagcgtgttttttgagttgcttttggctggctttcattgctattttggtttctagca |
412 |
Q |
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| T |
43430151 |
tgccactgcagttgtgatttggtgttgtgtttgggaggcttgctagcgtg-tttcggagttgcttctggctggcttttattgctattttggtttctagca |
43430053 |
T |
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| Q |
413 |
ggtttccaggg |
423 |
Q |
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| T |
43430052 |
ggtttccaggg |
43430042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 57 - 408
Target Start/End: Complemental strand, 51207994 - 51207644
Alignment:
| Q |
57 |
tgcttgatttttgttatactgattaaatatcattcnnnnnnnctattaactactttttgaatttatgtcgatttaggttcaatttttcagtgaataagat |
156 |
Q |
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|||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |
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| T |
51207994 |
tgcttgatttttgttatactgattcaatgtcattcaaaaaaactattaactactttttgaatttatgtagatttaggttcaatttt-cagtggataagat |
51207896 |
T |
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| Q |
157 |
gatggcaatgtgagaaatggtcaagcatggatgcttctcaaggaaatttatatgctagacaacaaacagagaataagaacttgaa---taagaaaaaata |
253 |
Q |
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| T |
51207895 |
gacgaccatgtgagaaatgctcaagcatggatgcttctcaaggaaatttatatgctaga--acaaacagagaataagaacttgaagaataagaaaaaata |
51207798 |
T |
|
| Q |
254 |
gattttatatgctgctgtgtttgatagcagtcctgtgcagagttgcagtttttctgtgatgccactgcagttgcgatttggtgttgtgtttgggagcctt |
353 |
Q |
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| T |
51207797 |
gattttatgtgttgttgtgtttaacagcagtcctgtgcaaagttgcagtttttctgtgatgccactgcagttgcggtttggtgttgtgtttgggaggccc |
51207698 |
T |
|
| Q |
354 |
gctagcgtgttttttgagttgcttttggctggctttcattgctattttggtttct |
408 |
Q |
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|||||||| |||| ||||||||| ||||||||||| |||||||||||||||||| |
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| T |
51207697 |
tctagcgtg-ttttggagttgcttctggctggcttttattgctattttggtttct |
51207644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 51208024 - 51207982
Alignment:
| Q |
16 |
gttttataagtagagattgatggagtaaaatgcttgatttttg |
58 |
Q |
| |
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||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
51208024 |
gttttataattagagatagagggagtaaaatgcttgatttttg |
51207982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 408
Target Start/End: Original strand, 6255793 - 6256189
Alignment:
| Q |
16 |
gttttataagtagagattgatggagtaaaatgcttgatttttgcttgatttttgttatactgattaaatatcattcnnnnnnnctattaactactttttg |
115 |
Q |
| |
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||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
6255793 |
gttttataattagagatagagggagtaaaatgcttgatttctgcttgatttttgttatactgattcaatatcattcaaaaaaaatattaactactttttg |
6255892 |
T |
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| Q |
116 |
aatttatgtcgatttaggttcaatttttcagtgaataagatgatggcaatgtgagaaatggtcaagcatggatgcttctcaaggaaatttatatgctaga |
215 |
Q |
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||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
6255893 |
aatttatgtggatttaggttcaatttc-cagtggataagatgatgacaatgtgagaaatggtcaaacatggatgcttctcaaggaaatttatatgtcaga |
6255991 |
T |
|
| Q |
216 |
caacaaacagagaataagaacttgaa---taagaaaa---aatagattttatatgctgctgtgtttgatagcagtcctgtgcagagttgcagtttttctg |
309 |
Q |
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|||||||||||||||| ||||||||| |||||||| |||||||||||| |||| |||||||||| | ||||||| ||||||||||||||||||| | |
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| T |
6255992 |
caacaaacagagaatacgaacttgaagaataagaaaaaaaaatagattttatgtgctactgtgtttgacaacagtcctatgcagagttgcagtttttcag |
6256091 |
T |
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| Q |
310 |
tgatgccactgcagttgcgatttggtgttgtgtttgggagccttgctagcgtgttttttgagttgcttttggctggctttcattgctattttggtttct |
408 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||| |||||||| ||| | ||||| |||||||||||||||||| |
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| T |
6256092 |
tgatgccactgcagttgcggtttggtgttgtgtttgggaggcttgctagcgtg-ttttgaagttgcttctggatagcttttattgctattttggtttct |
6256189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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