View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_high_8 (Length: 434)
Name: NF15758_high_8
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_high_8 |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 42956467 - 42956326
Alignment:
| Q |
103 |
ccattgtcataaatttttt-gaatgaatccattgtcgtaaattagtttgtatcattaatgtctttaattttcaagaaaatgtccnnnnnnnnnnaaacat |
201 |
Q |
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| T |
42956467 |
ccattgtcataaatttttttgaatgaatccattgtcgtaaattagtttgtatcattaatgtctttaatttttaagaaaatgtcc-tttttttttaaacat |
42956369 |
T |
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| Q |
202 |
aacaatgtaagattttataactactgatcccattatcaatgat |
244 |
Q |
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| T |
42956368 |
aacaatgtaagattttataactactgatcccattatcaatgat |
42956326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 316 - 370
Target Start/End: Complemental strand, 42956254 - 42956200
Alignment:
| Q |
316 |
ttattgaagaacaatcaatgtcaatgtttataaatttaccggttcaagtcacatg |
370 |
Q |
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| T |
42956254 |
ttattgaagaacaatcaatgtcaatgtttacaaatttaccggttaaagtcacatg |
42956200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 99 - 235
Target Start/End: Original strand, 11232683 - 11232820
Alignment:
| Q |
99 |
ctttccattgtcataaattttttgaatgaatccattgtcgtaaattagtttgtatcattaatgtctttaattttcaagaaaatgtc-cnnnnnnnnnnaa |
197 |
Q |
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| T |
11232683 |
ctttccattgtcataaattttttgaatgaatccattgtcgtaaattaatttgtatcattaatgtctttaattttcaagaaaatgtcatttttttttttaa |
11232782 |
T |
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| Q |
198 |
acataacaatgtaagattttataactactgatcccatt |
235 |
Q |
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| T |
11232783 |
acataacaatgtaagattttataactactgatcccatt |
11232820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 11232877 - 11232931
Alignment:
| Q |
316 |
ttattgaagaacaatcaatgtcaatgtttataaatttaccggttcaagtcacatg |
370 |
Q |
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| T |
11232877 |
ttattgaaaaacaatcaatgtcaatgtttacaaatttaccggttaaagtcacatg |
11232931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 416
Target Start/End: Original strand, 16926 - 16970
Alignment:
| Q |
372 |
ttgagaatccgaataacattttgcctaccagatatcttatgagac |
416 |
Q |
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| T |
16926 |
ttgagaatgcgaataacattttgcctaccaaatatcttatgagac |
16970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 416
Target Start/End: Complemental strand, 14164431 - 14164387
Alignment:
| Q |
372 |
ttgagaatccgaataacattttgcctaccagatatcttatgagac |
416 |
Q |
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| T |
14164431 |
ttgagaatgcgaataacattttgcctaccaaatatcttatgagac |
14164387 |
T |
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