View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15758_low_10 (Length: 402)

Name: NF15758_low_10
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15758_low_10
NF15758_low_10
[»] chr6 (63 HSPs)
chr6 (41-380)||(26655823-26656162)
chr6 (41-380)||(26761794-26762133)
chr6 (41-380)||(27338079-27338418)
chr6 (41-380)||(27398819-27399158)
chr6 (41-356)||(27698532-27698847)
chr6 (43-356)||(27724883-27725196)
chr6 (41-356)||(27718417-27718732)
chr6 (43-356)||(26802278-26802591)
chr6 (41-322)||(27229066-27229347)
chr6 (43-356)||(27611040-27611353)
chr6 (38-356)||(27678777-27679095)
chr6 (43-352)||(28780975-28781284)
chr6 (101-358)||(26142759-26143016)
chr6 (41-378)||(27593036-27593373)
chr6 (67-356)||(26884023-26884314)
chr6 (69-356)||(27604743-27605030)
chr6 (101-358)||(25481636-25481893)
chr6 (101-358)||(25579613-25579870)
chr6 (38-339)||(31284119-31284420)
chr6 (88-376)||(27531215-27531503)
chr6 (41-356)||(27677652-27677967)
chr6 (38-356)||(27706440-27706758)
chr6 (65-356)||(26646337-26646628)
chr6 (65-356)||(26752305-26752596)
chr6 (45-352)||(28786116-28786423)
chr6 (45-352)||(28792237-28792544)
chr6 (101-358)||(26048739-26048996)
chr6 (101-358)||(26055820-26056077)
chr6 (101-358)||(26069908-26070165)
chr6 (101-358)||(26075790-26076047)
chr6 (101-358)||(25538434-25538691)
chr6 (43-356)||(26622812-26623125)
chr6 (43-356)||(26728790-26729103)
chr6 (45-341)||(26861454-26861750)
chr6 (41-358)||(27427642-27427956)
chr6 (67-336)||(26823700-26823969)
chr6 (228-380)||(28149959-28150110)
chr6 (81-335)||(28234438-28234692)
chr6 (229-380)||(28139563-28139714)
chr6 (228-348)||(28242825-28242945)
chr6 (232-347)||(28181139-28181254)
chr6 (228-353)||(26341975-26342100)
chr6 (232-347)||(28185391-28185506)
chr6 (214-347)||(28226957-28227090)
chr6 (69-342)||(28325343-28325616)
chr6 (228-347)||(28297760-28297879)
chr6 (228-347)||(28514194-28514313)
chr6 (214-352)||(26937101-26937239)
chr6 (288-336)||(2184369-2184417)
chr6 (289-337)||(26975134-26975182)
chr6 (289-355)||(2184980-2185046)
chr6 (289-339)||(25071741-25071791)
chr6 (150-356)||(26848603-26848809)
chr6 (288-347)||(27214498-27214557)
chr6 (288-347)||(27234671-27234730)
chr6 (291-339)||(26949745-26949793)
chr6 (288-342)||(27665169-27665223)
chr6 (288-338)||(28098425-28098475)
chr6 (291-342)||(26635774-26635825)
chr6 (291-342)||(26741740-26741791)
chr6 (291-337)||(26959250-26959296)
chr6 (213-325)||(25506978-25507090)
chr6 (40-167)||(28098596-28098726)
[»] scaffold0349 (3 HSPs)
scaffold0349 (43-356)||(3459-3773)
scaffold0349 (41-356)||(14394-14708)
scaffold0349 (41-134)||(8061-8154)
[»] chr4 (8 HSPs)
chr4 (41-380)||(18724086-18724425)
chr4 (43-380)||(18679568-18679905)
chr4 (43-380)||(18731505-18731842)
chr4 (41-380)||(18699401-18699740)
chr4 (43-356)||(18655502-18655815)
chr4 (41-358)||(18073599-18073913)
chr4 (41-346)||(17989088-17989390)
chr4 (289-380)||(5090968-5091059)
[»] scaffold0277 (2 HSPs)
scaffold0277 (45-356)||(4709-5020)
scaffold0277 (43-352)||(13674-13983)
[»] scaffold0419 (1 HSPs)
scaffold0419 (41-350)||(7359-7668)
[»] chr1 (3 HSPs)
chr1 (65-356)||(28164387-28164678)
chr1 (68-356)||(28127704-28127993)
chr1 (41-356)||(268382-268697)
[»] scaffold1254 (1 HSPs)
scaffold1254 (41-259)||(52-270)
[»] chr8 (1 HSPs)
chr8 (39-356)||(29273808-29274125)
[»] scaffold0003 (1 HSPs)
scaffold0003 (41-358)||(59407-59721)
[»] scaffold0038 (4 HSPs)
scaffold0038 (81-347)||(34599-34865)
scaffold0038 (228-348)||(42987-43107)
scaffold0038 (214-347)||(27455-27588)
scaffold0038 (69-342)||(116658-116931)
[»] scaffold0019 (1 HSPs)
scaffold0019 (81-342)||(58334-58595)
[»] chr2 (2 HSPs)
chr2 (214-342)||(3279695-3279823)
chr2 (289-342)||(17993736-17993789)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 63)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 41 - 380
Target Start/End: Original strand, 26655823 - 26656162
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||| ||| |||||| ||| ||||||||| |||||||||  || |  ||||||||||| |||||||||||||||| |||||  ||| |||||    
T  26655823 tctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggt 26655922  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||  ||||||||||||||  ||||||||||||     
T  26655923 tttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcg 26656022  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    | ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26656023 ttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattg 26656122  T
Q  341 ctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    ||| ||||||||||||||||||||||||||| ||||||||    
T  26656123 ctataagacaaagggttgttcggttttgcctgttttctat 26656162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 41 - 380
Target Start/End: Original strand, 26761794 - 26762133
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||| ||| |||||| ||| ||||||||| |||||||||  || |  ||||||||||| |||||||||||||||| |||||  ||| |||||    
T  26761794 tctcatggctatacaatcaccttcctcatcctcttcattttcctatgggtttaaataccaagtgttcctcagttttaggggcattgacacccggcacggt 26761893  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||| | ||||||||  ||||||||||||||  ||||||||||||     
T  26761894 tttaccggcaatctctacaaggctcttattgataagggaatccatactttcattgatgacaatgatcttctcagaggagatgaaatcacaccatcactcg 26761993  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    | ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26761994 ttaaggccattgaagaatccaggatttttattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcattg 26762093  T
Q  341 ctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    ||| ||||||||||||||||||||||||||| ||||||||    
T  26762094 ctataagacaaagggttgttcggttttgcctgttttctat 26762133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 380
Target Start/End: Complemental strand, 27338418 - 27338079
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| ||| || |||||||||||||||||||| ||  ||||  ||||| ||||| ||||||||||||| || ||||| ||  ||||||    
T  27338418 tctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacggt 27338319  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| |||||||||||||||||||||||||||||||||||| | || |||||||||| | | |||||| | |||||||||||||  |||||||||||      
T  27338318 tttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttg 27338219  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    |||||||||||||||| || | ||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27338218 tcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactg 27338119  T
Q  341 ctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  27338118 ctacaagacaaggggttgttcggttttgcctgttttctat 27338079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 41 - 380
Target Start/End: Complemental strand, 27399158 - 27398819
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| ||| || |||||||||||||||||||| ||  ||||  ||||| ||||| ||||||||||||| || ||||| ||  ||||||    
T  27399158 tctcatggctatgcaatcactttcctcttcctcttcaatttcctctgggttcaaataccatgtgttcctcagttttagggacattgacactctttacggt 27399059  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| |||||||||||||||||||||||||||||||||||| | || |||||||||| | | |||||| | |||||||||||||  |||||||||||      
T  27399058 tttaccggcaatctctacaaggctcttattgacaagggaatcaaaaccttcattgatgacaacgatcttgaaagaggagatgaaagcacaccatcacttg 27398959  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    |||||||||||||||| || | ||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27398958 tcaaggccattgaagagtctaggattttgattcccatattttctgcaaactatgcatcttcttcattttgcttggacgaacttgtccacatcattcactg 27398859  T
Q  341 ctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  27398858 ctacaagacaaggggttgttcggttttgcctgttttctat 27398819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 41 - 356
Target Start/End: Complemental strand, 27698847 - 27698532
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||| ||| |||||| ||| ||| ||||| ||||||||| ||||||||||||||||||  ||||||||||||||| ||||| |||| |||||    
T  27698847 tctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggt 27698748  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  27698747 tttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 27698648  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    ||||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  27698647 tcaaggccattgatgaatctaggatttttattcctgtgttttctctcaactatgcatcttcttcattttgtttggacgaacttgtccacataattcactg 27698548  T
Q  341 ctacaagacaaagggt 356  Q
    |||| |||||||||||    
T  27698547 ctacgagacaaagggt 27698532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 43 - 356
Target Start/End: Complemental strand, 27725196 - 27724883
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    |||||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| || ||||||||||||| ||||| |||| |||||||    
T  27725196 tcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttt 27725097  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||    
T  27725096 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctc 27724997  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    ||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||| | |||||| |||||||||||||||||||||||||| ||||||||||    
T  27724996 aaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctattcttcgttttgtttggacgaacttgtccacataattcactgct 27724897  T
Q  343 acaagacaaagggt 356  Q
    ||||||||||||||    
T  27724896 acaagacaaagggt 27724883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 41 - 356
Target Start/End: Complemental strand, 27718732 - 27718417
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||| ||| |||||| ||| ||||||||| | ||| ||| |||||||||||||||||| |||||||||||||||| ||||| |||| || ||    
T  27718732 tctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcggcacagt 27718633  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  27718632 tttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 27718533  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    ||||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||    
T  27718532 tcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactg 27718433  T
Q  341 ctacaagacaaagggt 356  Q
    ||||||||||||||||    
T  27718432 ctacaagacaaagggt 27718417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 43 - 356
Target Start/End: Original strand, 26802278 - 26802591
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    |||||||||||||  | |||| ||| ||||||||| |||| |||| |||||||||||||||||| |||||||||||||||| ||||| ||||||||||||    
T  26802278 tcatggctatgcagtctccttcctcatcctcttcattttcttatggattcacttaccaagtgttcctcagttttaggggcactgacactcggtacggttt 26802377  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  |||||||||||||||    
T  26802378 tacgggcaatctctacaaggctcttattgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcatc 26802477  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    ||||||||||||||||| |  || || |||||  | ||||||  ||||||||| |||||   |||||| |||||||||||||| ||||| ||||| ||||    
T  26802478 aaggccattgaagaatctagaatttttattcctgtgttttctatcaactatgcctcttcaaaattttgcttggacgaacttgttcacattattcattgct 26802577  T
Q  343 acaagacaaagggt 356  Q
    | ||||||||||||    
T  26802578 ataagacaaagggt 26802591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 41 - 322
Target Start/End: Original strand, 27229066 - 27229347
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||| ||| |||||| ||||||||||||| |||||| || |||||||||||||||||| || ||||||||||||| ||||| |||| |||||    
T  27229066 tctcatggctatacaatcaccttcctcttcctcttcattttcctttggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggt 27229165  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||| ||||  ||||||||||||     
T  27229166 tttaccggcaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagacgaaatcacaccatcactcg 27229265  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaact 322  Q
    ||||||||||||| |||||   ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27229266 tcaaggccattgacgaatctcggatttttattcccatattttctgccaactatgcatcttcttcattttgtttgaacgaact 27229347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 43 - 356
Target Start/End: Complemental strand, 27611353 - 27611040
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    ||||||||||||||  | ||| |||||| |||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||  |||||||    
T  27611353 tcatggctatgcaattagcttcctcttcttcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 27611254  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | ||||||||   |||||||||||||  |||||||||||| ||    
T  27611253 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttccaagaggagatgaaatcacaccatcactcctc 27611154  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    ||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  27611153 aaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgtccacataattcactgct 27611054  T
Q  343 acaagacaaagggt 356  Q
    ||||||||||||||    
T  27611053 acaagacaaagggt 27611040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 38 - 356
Target Start/End: Original strand, 27678777 - 27679095
Alignment:
Q  38 aaatctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtac 137  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||||  | ||  |||||||| || |||||||| || || ||||||| |||||||    
T  27678777 aaatctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaagtgacactcggtac 27678876  T
Q  138 ggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcac 237  Q
    ||||| || || ||||||||||||||||||| ||||||||||||| | || |||||||||    ||| |||| | |||||||||||||  ||||||||||    
T  27678877 ggtttcaccgggaatctctacaaggctcttactgacaagggaatcaacaccttcattgataagaatggtcttcaaagaggagatgaaatcacaccatcac 27678976  T
Q  238 tcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattca 337  Q
    |  |||||||||||||||| || | ||| || |||||  | ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27678977 ttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattca 27679076  T
Q  338 ctgctacaagacaaagggt 356  Q
    |||||||||||||||||||    
T  27679077 ctgctacaagacaaagggt 27679095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 43 - 352
Target Start/End: Original strand, 28780975 - 28781284
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    ||||||||||||||  ||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||  |||||||    
T  28780975 tcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 28781074  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||| |||||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||    
T  28781075 taccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctc 28781174  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    |||||||| |||||||| | ||| || |||||  | ||||||  |||||||||  ||||   |||||| |||||||||||||| ||||| ||||| ||||    
T  28781175 aaggccatcgaagaatctaggatttttattcctgtgttttctatcaactatgccacttcaaaattttgcttggacgaacttgttcacattattcattgct 28781274  T
Q  343 acaagacaaa 352  Q
    ||||||||||    
T  28781275 acaagacaaa 28781284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 26142759 - 26143016
Alignment:
Q  101 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 200  Q
    |||||| |||||||| ||||||||||||| |||  ||   ||||| || |||||||| ||||||||| ||||||||||||| | ||| ||||||||||      
T  26142759 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgat 26142858  T
Q  201 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatctt 300  Q
     |||||||| | |||||||||||||  |||||||||||  ||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||    
T  26142859 aatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatctt 26142958  T
Q  301 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26142959 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttg 26143016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 41 - 378
Target Start/End: Complemental strand, 27593373 - 27593036
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||  | ||  |||||||| || |||||||| || || ||||||| ||||||||||    
T  27593373 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgattacaaataccaagtattcctcagtttcagaggaagtgacactcggtacggt 27593274  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    || || |||||||||||||||||||||| ||||||||||||| | || |||||||||| | ||| |||| | |||||| ||||||  |||||||||||      
T  27593273 ttcaccggcaatctctacaaggctcttactgacaagggaatcaacaccttcattgatgacaatggtcttcaaagaggaaatgaaatcacaccatcacttc 27593174  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    |||||||||||||||| || | ||| || |||||  | ||||||  ||||||||| |||||||| ||||||||||||||||||| |||||||||||| ||    
T  27593173 tcaaggccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcgttttgtttggacgaacttgaccacatcattcattg 27593074  T
Q  341 ctacaagacaaagggttgttcggttttgcctattttct 378  Q
    |||||||||||||||| |  | ||||||||| ||||||    
T  27593073 ctacaagacaaagggtcgccctgttttgcctgttttct 27593036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 67 - 356
Target Start/End: Original strand, 26884023 - 26884314
Alignment:
Q  67 cttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctct 166  Q
    ||||||||||| ||||||||| |||||||||||||||||| |||||||| || || ||||||| |||||| ||||| || || |||||||||||||||||    
T  26884023 cttcctcttcattttcctatggattcacttaccaagtgttcctcagtttcagaggaagtgacactcggtatggtttcactggaaatctctacaaggctct 26884122  T
Q  167 tattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatc 266  Q
    || | ||||||||||||| || ||||||||||   || |||||   ||||||   ||||  |||||||||||||||||||||||||||||||| |  ||     
T  26884123 tactaacaagggaatccacaccttcattgatgataatcatcttccaagaggaagcgaaatcacaccatcactcatcaaggccattgaagaatctagaatt 26884222  T
Q  267 ttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccaca--tcattcactgctacaagacaaagggt 356  Q
    || ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  26884223 tttattccaatattttctaccaactatgcatcttcttcattttgtttggacgaacttgtccacatgtcattcactgctacgagacaaagggt 26884314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 69 - 356
Target Start/End: Complemental strand, 27605030 - 27604743
Alignment:
Q  69 tcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctctta 168  Q
    ||||||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||||    
T  27605030 tcctcttcattttcctatgcattcacttaccaagtgttccttagttttaggggcactgacactcgatacggttttaccggcaatctctacaaggctctta 27604931  T
Q  169 ttgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatctt 268  Q
     |||||||||||| ||||| ||||||||||   ||||||||   |||||||||||||  |||||| ||||  ||||||||||||| ||||||| ||| ||    
T  27604930 ctgacaagggaattcataccttcattgatgaaaatgatcttcgaagaggagatgaaatcacaccagcacttctcaaggccattgatgaatccaggatttt 27604831  T
Q  269 cattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggt 356  Q
     |||||  | ||||||  ||| ||||| |||||||| ||||||||||| |||||||| ||||||||||| ||||||| ||||||||||    
T  27604830 tattcctgtgttttctatcaaatatgcctcttcttccttttgtttggatgaacttgttcacatcattcattgctacacgacaaagggt 27604743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 25481636 - 25481893
Alignment:
Q  101 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 200  Q
    |||||| |||| ||| ||||||||||||| |||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | ||| ||||||||||      
T  25481636 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattcgtactttcattgatgaa 25481735  T
Q  201 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatctt 300  Q
     |||||||| | |||||||||||||  |||||||||||  ||||||||||||||||||| | ||| |  |||||||||||||||||||||||||||||||    
T  25481736 aatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttgtattcccatattttctgccaactatgcatctt 25481835  T
Q  301 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25481836 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttg 25481893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 25579613 - 25579870
Alignment:
Q  101 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 200  Q
    |||||| |||||||| || |||||||||| |||  ||  |||||| || |||||||| ||||||||| ||||||||||||| | ||| ||| ||||||      
T  25579613 agtgttcctcagtttcagaggcagtgacactcgcaacacttttaccggtaatctctataaggctcttgttgacaagggaattcgtaccttctttgatgat 25579712  T
Q  201 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatctt 300  Q
     |||||||| | |||||||||||||  |||||||||||  ||||||||||||||||||| | ||| || |||||||||||||||||||||||||||||||    
T  25579713 aatgatcttcaaagaggagatgaaatcacaccatcacttgtcaaggccattgaagaatctaggatttttattcccatattttctgccaactatgcatctt 25579812  T
Q  301 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25579813 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttg 25579870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 38 - 339
Target Start/End: Original strand, 31284119 - 31284420
Alignment:
Q  38 aaatctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtac 137  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||| |||||  |||||||| || || ||||| ||||| ||||||| ||||||     
T  31284119 aaatctcatggctatgcaatcatcttcctcttcctcttcaatttcctatgtattcaaataccaagtattccttagtttcaggggaagtgacactcggtat 31284218  T
Q  138 ggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcac 237  Q
    ||||| || |||||||||||||||||||||| ||||||||||||||| || ||||||||||    ||| ||| | ||||| |||||||  ||||||||||    
T  31284219 ggtttcaccggcaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatagtgaacttcaaagaggggatgaaatcacaccatcac 31284318  T
Q  238 tcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattca 337  Q
    ||  ||| ||||||||||| || | ||| || || ||| | ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  31284319 tcgacaatgccattgaagagtctaggatttttatccccgtgttttctgccaactatgcctcttcgtcgttttgtttggacgaacttgtccacatcattca 31284418  T
Q  338 ct 339  Q
    ||    
T  31284419 ct 31284420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 88 - 376
Target Start/End: Complemental strand, 27531503 - 27531215
Alignment:
Q  88 cattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatac 187  Q
    ||||||||||||||||||| |||||||||||||||   |||| |||  |||||||||| || ||||||||||||||||||| ||||||||||||| ||||    
T  27531503 cattcacttaccaagtgttcctcagttttaggggcgcggacactcgccacggttttaccggaaatctctacaaggctcttactgacaagggaatctatac 27531404  T
Q  188 attcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgcc 287  Q
     |||||||||| | |||||||| | |||||||||||||  ||||||||||| |  || ||||||||| |||| | ||| || |||||| |||||||||      
T  27531403 cttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactaaaaaatgccattgaaaaatctaggatttttattcccgtattttctgaa 27531304  T
Q  288 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttgttcggttttgcctatttt 376  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||| | ||||||||||||   ||||||||| ||||    
T  27531303 aactatgcatcttcttcattttgtttggacgaacttgttcacatcactcattgctacgatacaaagggttgtcttgttttgcctgtttt 27531215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 41 - 356
Target Start/End: Complemental strand, 27677967 - 27677652
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||  | ||  |||||||| || |||| ||| || || ||||||| ||||||||||    
T  27677967 tctcatggctatgcaatcaccttcctcttccacttcaatttcctatgagtacaaataccaagtattcctcaatttcagaggaagtgacactcggtacggt 27677868  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    || || |||||||||||||||||||||  ||||||||||||||| || ||||||||     |||| ||| | ||||| |||||||  |||||||||||      
T  27677867 ttcaccggcaatctctacaaggctcttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaggggatgaaatcacaccatcacttc 27677768  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    |||||||||||||||| || | ||| || ||| |  | ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27677767 tcaaggccattgaagagtctaggatttttattgctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactg 27677668  T
Q  341 ctacaagacaaagggt 356  Q
    ||||||||||||||||    
T  27677667 ctacaagacaaagggt 27677652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 38 - 356
Target Start/End: Complemental strand, 27706758 - 27706440
Alignment:
Q  38 aaatctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtac 137  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||  | ||  |||||||| || |||||||| || ||  |||||| |||||||    
T  27706758 aaatctcatggctatgcaatcacctttctcttccacttcaatttcctatgagtacaaataccaagtattcctcagtttcagaggaggtgacactcggtac 27706659  T
Q  138 ggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcac 237  Q
    ||||| || |||||||||||||||||| ||  ||||||||||||||| || ||||||||     |||| ||| | ||| | |||||||  ||||||||||    
T  27706658 ggtttcacaggcaatctctacaaggcttttgatgacaagggaatccacaccttcattgacaatcatgaacttcaaagaagggatgaaatcacaccatcac 27706559  T
Q  238 tcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattca 337  Q
    |  |||||||||||||||| || | ||| || |||||  | ||||||  || |||||| |||||||||||||||||||||||||||||||||||||||||    
T  27706558 ttctcaaggccattgaagagtctaggatttttattcctgtgttttctatcacctatgcctcttcttcattttgtttggacgaacttgtccacatcattca 27706459  T
Q  338 ctgctacaagacaaagggt 356  Q
    |||||||||||||||||||    
T  27706458 ctgctacaagacaaagggt 27706440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 65 - 356
Target Start/End: Original strand, 26646337 - 26646628
Alignment:
Q  65 ctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggct 164  Q
    ||||||||||| ||||||||| | |||||| ||||| || || ||||  || ||||||||||||| |||  |||||||||| ||  ||||||||||||||    
T  26646337 ctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggct 26646436  T
Q  165 cttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacga 264  Q
    |||| |||||||||||| || || ||||||||||    ||||||| | |||||||||||||  |||||||||||||||||||||||||||||||| | ||    
T  26646437 cttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctagga 26646536  T
Q  265 tcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggt 356  Q
    | || |||||  | ||||||  ||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26646537 tttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaagggt 26646628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 65 - 356
Target Start/End: Original strand, 26752305 - 26752596
Alignment:
Q  65 ctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggct 164  Q
    ||||||||||| ||||||||| | |||||| ||||| || || ||||  || ||||||||||||| |||  |||||||||| ||  ||||||||||||||    
T  26752305 ctcttcctctttaatttcctacggattcacctaccaggtcttcctcaacttcaggggcagtgacactcgtgacggttttactggacatctctacaaggct 26752404  T
Q  165 cttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacga 264  Q
    |||| |||||||||||| || || ||||||||||    ||||||| | |||||||||||||  |||||||||||||||||||||||||||||||| | ||    
T  26752405 cttactgacaagggaattcacaccttcattgatgattgtgatcttaagagaggagatgaaatcacaccatcactcatcaaggccattgaagaatctagga 26752504  T
Q  265 tcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggt 356  Q
    | || |||||  | ||||||  ||||||||| ||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26752505 tttttattcctgtgttttctatcaactatgcctcttctaaattttgtttggacgaacttgtccacatcattcattgctacaagacaaagggt 26752596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 45 - 352
Target Start/End: Original strand, 28786116 - 28786423
Alignment:
Q  45 atggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggtttta 144  Q
    |||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||  |||||||||    
T  28786116 atggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 28786215  T
Q  145 cgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaa 244  Q
    | || ||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||||    
T  28786216 ccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaa 28786315  T
Q  245 ggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctac 344  Q
    |||||| |||||||| | ||| || |||||  | ||||||  |||||| ||  | ||   |||||| |||||||||||||| ||||| ||||| ||||||    
T  28786316 ggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttggacgaacttgttcacattattcattgctac 28786415  T
Q  345 aagacaaa 352  Q
    ||||||||    
T  28786416 aagacaaa 28786423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 45 - 352
Target Start/End: Original strand, 28792237 - 28792544
Alignment:
Q  45 atggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggtttta 144  Q
    |||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||  |||||||||    
T  28792237 atggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggtttta 28792336  T
Q  145 cgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaa 244  Q
    | || ||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||||    
T  28792337 ccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctcaa 28792436  T
Q  245 ggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctac 344  Q
    |||||| |||||||| | ||| || |||||  | ||||||  |||||| ||  | ||   |||||| |||||||||||||| ||||| ||||| ||||||    
T  28792437 ggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacatcaaaattttgcttggacgaacttgttcacattattcattgctac 28792536  T
Q  345 aagacaaa 352  Q
    ||||||||    
T  28792537 aagacaaa 28792544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 26048739 - 26048996
Alignment:
Q  101 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 200  Q
    |||||| |||||||| ||||||||||||| |||  ||  |||||| || |||||||| |||||||| ||||||||||||||   ||| ||||||||||      
T  26048739 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26048838  T
Q  201 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatctt 300  Q
     |||||||| | |||||||||||||  |||||   |||  |||||||||| |||||||| | ||| || |||||||||||||||||||||||||||||||    
T  26048839 aatgatcttgaaagaggagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgccaactatgcatctt 26048938  T
Q  301 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26048939 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttg 26048996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 26055820 - 26056077
Alignment:
Q  101 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 200  Q
    |||||| |||| ||| ||||||||||||| |||  ||  |||||| || |||||||| ||||||||| |||||||||||||  |||| ||||||||||      
T  26055820 agtgttcctcattttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26055919  T
Q  201 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatctt 300  Q
     |||||||| | |||||||||||||  ||| |||||||  |||||||||| ||||||||   ||| || |||||||||||||||||||||||||||||||    
T  26055920 aatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaactatgcatctt 26056019  T
Q  301 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttg 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26056020 cttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaagagttg 26056077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 26069908 - 26070165
Alignment:
Q  101 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 200  Q
    |||||| |||||||| ||||||||||||| |||  ||  |||||| || |||||||| |||||||| ||||||||||||||   ||| ||||||||||      
T  26069908 agtgttcctcagtttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctctcattgacaagggaatttgtactttcattgatgat 26070007  T
Q  201 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatctt 300  Q
     |||||||| | |||||||||||||  |||||   |||  |||||||||| |||||||| | ||| || |||||||||||||||||||||||||||||||    
T  26070008 aatgatcttgaaagaggagatgaaatcacacccaaacttgtcaaggccatggaagaatctaggatttttattcccatattttctgccaactatgcatctt 26070107  T
Q  301 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttg 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26070108 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagagttg 26070165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 26075790 - 26076047
Alignment:
Q  101 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 200  Q
    |||||| |||| ||| ||||||||||||| |||  ||  |||||| || |||||||| ||||||||| |||||||||||||  |||| ||||||||||      
T  26075790 agtgttcctcaatttcaggggcagtgacactcgcaacaattttaccggtaatctctataaggctcttgttgacaagggaattaatactttcattgatgaa 26075889  T
Q  201 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatctt 300  Q
     |||||||| | |||||||||||||  ||| |||||||  |||||||||| ||||||||   ||| || |||||||||||||||||||||||||||||||    
T  26075890 aatgatcttcaaagaggagatgaaatcacatcatcacttgtcaaggccatcgaagaatctgggatttttattcccatattttctgccaactatgcatctt 26075989  T
Q  301 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttg 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  26075990 cttcattttgtttggacgaacttgtccacatcattcactgctacaacacaaagagttg 26076047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 101 - 358
Target Start/End: Original strand, 25538434 - 25538691
Alignment:
Q  101 agtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggc 200  Q
    |||||| |||||||| ||||||||||||| |||  ||   ||||| || |||||||| ||||||||| |||||||||||||   ||| ||||| ||||      
T  25538434 agtgttcctcagtttcaggggcagtgacactcgcaacaaatttaccggtaatctctataaggctcttgttgacaagggaattagtactttcatagatgat 25538533  T
Q  201 gatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatctt 300  Q
     |||||||| | |||||||||||||  |||||||||||  |||||||||| |||||||| |  || || |||||||||||||||||||||||||||||||    
T  25538534 aatgatcttgaaagaggagatgaaatcacaccatcacttgtcaaggccatcgaagaatctagaatttttattcccatattttctgccaactatgcatctt 25538633  T
Q  301 cttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttg 358  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  25538634 cttcattttgtttggacgaacttgtccagatcattcactgctacaagacaaagagttg 25538691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 43 - 356
Target Start/End: Original strand, 26622812 - 26623125
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    |||||||||||||| |||| | ||||||||||||||||||||||  |||||  ||||||||||| || ||||| || |||||||||| ||||||||||||    
T  26622812 tcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggttt 26622911  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
     || || ||||||||||||||||||| ||||||||||||||| || ||||||||||    ||| ||| | ||||| || ||||  | |||||||||   |    
T  26622912 cactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatcacttgac 26623011  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    || || || ||||| || | ||| || |||||  | |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  26623012 aatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgct 26623111  T
Q  343 acaagacaaagggt 356  Q
    |||| |||||||||    
T  26623112 acaaaacaaagggt 26623125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 43 - 356
Target Start/End: Original strand, 26728790 - 26729103
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    |||||||||||||| |||| | ||||||||||||||||||||||  |||||  ||||||||||| || ||||| || |||||||||| ||||||||||||    
T  26728790 tcatggctatgcaatcaccatcctcttcctcttcaatttcctatcaattcaaataccaagtgttcctaagtttcagaggcagtgacactcggtacggttt 26728889  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
     || || ||||||||||||||||||| ||||||||||||||| || ||||||||||    ||| ||| | ||||| || ||||  | |||||||||   |    
T  26728890 cactggaaatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggacgaaatcaaaccatcacttgac 26728989  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    || || || ||||| || | ||| || |||||  | |||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  26728990 aatgctatcgaagagtctaggatttttattcctgtgttttctcccaactatgcatattcttcattttgtttggatgaacttgtccacatcattcactgct 26729089  T
Q  343 acaagacaaagggt 356  Q
    |||| |||||||||    
T  26729090 acaaaacaaagggt 26729103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 45 - 341
Target Start/End: Original strand, 26861454 - 26861750
Alignment:
Q  45 atggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggtttta 144  Q
    |||||||||||| |||||| |||||||||||| |||||||||| |||||  ||||| || || |||||||| || || ||||||| |||||| |||||||    
T  26861454 atggctatgcaatcaccttgctcttcctcttccatttcctatggattcaaataccaggtattcctcagtttcagaggaagtgacactcggtatggtttta 26861553  T
Q  145 cgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaa 244  Q
    | || ||||||||||||||||||| |||||||||||| || || ||||| ||||    ||| ||| | ||||| |||||||  | |  |||||||  |||    
T  26861554 ccggtaatctctacaaggctcttactgacaagggaattcacaccttcatggatgatcgtgaacttcaaagaggggatgaaatcaaaagatcactcgacaa 26861653  T
Q  245 ggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgc 341  Q
     ||||||||||| || |  || ||||||||  | ||||||||||||||||| ||||| |||||||||||||| ||||||||||| |||||| |||||    
T  26861654 tgccattgaagagtctagaattttcattcctgtgttttctgccaactatgcctcttcgtcattttgtttggatgaacttgtccaaatcattaactgc 26861750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 41 - 358
Target Start/End: Complemental strand, 27427956 - 27427642
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    ||||||||| ||||||  |||||||| |||||||||| ||||||||||||||| |||| | ||||| |||| || || |||||  |||| ||||||||||    
T  27427956 tctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggt 27427857  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatga------tctttacagaggagatgaaaagacaccat 234  Q
    || || ||||||||||  ||||||||||||||||||||||| | ||| |||  ||||| ||||||      |||| | ||| ||||   |||| ||| |     
T  27427856 ttcaccggcaatctcttgaaggctcttattgacaagggaattcgtaccttccatgatgacgatgacagtgatcttcaaagaagagac--aaagtcac-ac 27427760  T
Q  235 cactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcat 334  Q
    || |||| |      |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  27427759 caatcatta------ttgaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcat 27427666  T
Q  335 tcactgctacaagacaaagggttg 358  Q
    |||||||||||| || ||||||||    
T  27427665 tcactgctacaaaaccaagggttg 27427642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 67 - 336
Target Start/End: Original strand, 26823700 - 26823969
Alignment:
Q  67 cttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctct 166  Q
    ||||||||||| |||| ||||  ||||  ||||||||||| ||||||||||| |||  ||||| |||||| |  ||||| ||||||||||||||||||||    
T  26823700 cttcctcttcagtttcatatgatttcaaataccaagtgtttctcagttttagaggcgctgacactcggtatgaatttaccggcaatctctacaaggctct 26823799  T
Q  167 tattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatc 266  Q
    ||  |||||||||||||| || ||  ||||||    ||| ||| | ||||| ||| |||    || ||||||||  || ||||||||||| || | |||     
T  26823800 tacagacaagggaatccacaccttttttgatgatcgtgaacttcaaagaggggataaaatcgaacaatcactcaataatgccattgaagagtctaggatt 26823899  T
Q  267 ttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattc 336  Q
    || |||||  | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26823900 tttattcctgtgttttctgccaactatgcctcttcttcattttgtttggacgaacttgtccacatcattc 26823969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 228 - 380
Target Start/End: Original strand, 28149959 - 28150110
Alignment:
Q  228 acaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 327  Q
    |||||||||||| |||||||||||||||| |||| ||| |||||||| || || |||  ||||||| | |||||||||||||||||||||||||||||||    
T  28149959 acaccatcactc-tcaaggccattgaagagtccaggattttcattccaatcttctctatcaactatacttcttcttcattttgtttggacgaacttgtcc 28150057  T
Q  328 acatcattcactgctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    |||| |||||||||| |||| |||||||||| |  ||| ||||||||||||||    
T  28150058 acattattcactgcttcaaggcaaagggttgcttagttctgcctattttctat 28150110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 81 - 335
Target Start/End: Original strand, 28234438 - 28234692
Alignment:
Q  81 tcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaa 180  Q
    ||||||| |||||| ||  | ||||| || |||||||| || ||||||| ||| || |||||||| |  |||||||| |  ||||||  | |||||||||    
T  28234438 tcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaa 28234537  T
Q  181 tccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatatt 280  Q
    |||| || |||||||||| |   || ||| |  ||||||||||||  |||||||||||  |||||||||||||||| || | ||| ||||||||  | ||    
T  28234538 tccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtctt 28234637  T
Q  281 ttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcatt 335  Q
     |||  ||| ||||| |||||||||||||| ||||||||||||||||||||||||    
T  28234638 gtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcatt 28234692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 229 - 380
Target Start/End: Original strand, 28139563 - 28139714
Alignment:
Q  229 caccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcca 328  Q
    |||| |||||| | || |||||||||||||| | ||| ||||| ||  | |||||   ||||||||| |||||||| ||||| |||||||||||||||||    
T  28139563 caccgtcactcgtaaaagccattgaagaatctaggattttcatccctgtgttttccatcaactatgcctcttcttcgttttgcttggacgaacttgtcca 28139662  T
Q  329 catcattcactgctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    ||||||| |||||| ||| |||||||| |||| |||||||||| ||||||||    
T  28139663 catcattgactgcttcaacacaaagggatgtttggttttgcctgttttctat 28139714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 28242825 - 28242945
Alignment:
Q  228 acaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 327  Q
    |||||||||||  |||||||||||||||| || | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||||||||||||||||    
T  28242825 acaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtcc 28242924  T
Q  328 acatcattcactgctacaaga 348  Q
    ||||||||||||||| |||||    
T  28242925 acatcattcactgctgcaaga 28242945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 232 - 347
Target Start/End: Original strand, 28181139 - 28181254
Alignment:
Q  232 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 331  Q
    |||||||  |||||||||||||||| || | ||| ||||||||| | || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||    
T  28181139 catcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacat 28181238  T
Q  332 cattcactgctacaag 347  Q
    ||||||||||| ||||    
T  28181239 cattcactgcttcaag 28181254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 228 - 353
Target Start/End: Complemental strand, 26342100 - 26341975
Alignment:
Q  228 acaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 327  Q
    |||| ||||||  |||| ||||||||||| |||| ||| |||||||| || || ||   ||||||||| |||||||| ||||||||||||||||||||||    
T  26342100 acacaatcacttgtcaaagccattgaagagtccaggattttcattccaattttctcaatcaactatgcttcttcttcgttttgtttggacgaacttgtcc 26342001  T
Q  328 acatcattcactgctacaagacaaag 353  Q
    |||||||||| |||| |||| |||||    
T  26342000 acatcattcattgcttcaaggcaaag 26341975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 347
Target Start/End: Original strand, 28185391 - 28185506
Alignment:
Q  232 catcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacat 331  Q
    |||||||  |||||||||||||||| || | ||| ||||||||| | || |||  ||| ||||| |||||||||||||| ||||||||||||||||||||    
T  28185391 catcacttttcaaggccattgaagagtctaggattttcattcccgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacat 28185490  T
Q  332 cattcactgctacaag 347  Q
    |||| |||||| ||||    
T  28185491 cattaactgcttcaag 28185506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 28226957 - 28227090
Alignment:
Q  214 gaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgttt 313  Q
    |||| |||||||  ||| |||||||  |||||| |||||||||||| | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||    
T  28226957 gaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgctt 28227056  T
Q  314 ggacgaacttgtccacatcattcactgctacaag 347  Q
    |||||||||||||||||||||||| |||| ||||    
T  28227057 ggacgaacttgtccacatcattcattgcttcaag 28227090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 342
Target Start/End: Original strand, 28325343 - 28325616
Alignment:
Q  69 tcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctctta 168  Q
    ||||||||  ||||||||| |||||| ||  | ||||| || |||||||| || ||||||| ||| || |||||||| || ||||||||||| | ||||     
T  28325343 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 28325442  T
Q  169 ttgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatctt 268  Q
     |   ||| |||| | ||| |||||||||| | | || ||| |  |||| || ||||  ||||| |||||  |||||||||||||||| || | ||| ||    
T  28325443 gtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggatttt 28325542  T
Q  269 cattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    |||||| || || |||  ||| ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||    
T  28325543 cattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactgct 28325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 347
Target Start/End: Complemental strand, 28297879 - 28297760
Alignment:
Q  228 acaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 327  Q
    |||||||||||  |||||  |||||||||  | | ||| ||||||||  | || ||| |||| ||||| |||||||||||||| ||||||||||||||||    
T  28297879 acaccatcacttttcaagcacattgaagagactaggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtcc 28297780  T
Q  328 acatcattcactgctacaag 347  Q
    ||||||||||||||| ||||    
T  28297779 acatcattcactgcttcaag 28297760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 228 - 347
Target Start/End: Original strand, 28514194 - 28514313
Alignment:
Q  228 acaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 327  Q
    |||||||||||  |||||  |||||||||  | | ||| ||||||||  | || ||| |||| ||||| |||||||||||||| ||||||||||||||||    
T  28514194 acaccatcacttttcaagcacattgaagagactaggattttcattcctgtcttatctaccaattatgcttcttcttcattttgcttggacgaacttgtcc 28514293  T
Q  328 acatcattcactgctacaag 347  Q
    ||||||||||||||| ||||    
T  28514294 acatcattcactgcttcaag 28514313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 352
Target Start/End: Original strand, 26937101 - 26937239
Alignment:
Q  214 gaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgttt 313  Q
    ||||||| ||||  |||||||||||  ||||||| |||||||| |||  |||   ||| ||  |||| |||  |||||||||  ||||||||||||||||    
T  26937101 gaggagaagaaatcacaccatcacttgtcaaggcaattgaagattccgggattgccatacctgtattctctatcaactatgccacttcttcattttgttt 26937200  T
Q  314 ggacgaacttgtccacatcattcactgctacaagacaaa 352  Q
    ||||||||||||||||||| || |||||| |||||||||    
T  26937201 ggacgaacttgtccacatcgttgactgcttcaagacaaa 26937239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 336
Target Start/End: Original strand, 2184369 - 2184417
Alignment:
Q  288 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattc 336  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2184369 aactatgcttcttcttcattttgtttggacgaacttgtccacatcattc 2184417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 337
Target Start/End: Original strand, 26975134 - 26975182
Alignment:
Q  289 actatgcatcttcttcattttgtttggacgaacttgtccacatcattca 337  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26975134 actatgcttcttcttcattttgtttggacgaacttgtccacatcattca 26975182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #51
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 355
Target Start/End: Original strand, 2184980 - 2185046
Alignment:
Q  289 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaaggg 355  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||||    
T  2184980 actatgcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 2185046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #52
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 339
Target Start/End: Original strand, 25071741 - 25071791
Alignment:
Q  289 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcact 339  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  25071741 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcact 25071791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #53
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 150 - 356
Target Start/End: Original strand, 26848603 - 26848809
Alignment:
Q  150 aatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggcca 249  Q
    |||||||| || ||||||  |||||| |||||||  || |||||||||| | | |||||| | || || ||||| |  ||||| || ||| |||||  ||    
T  26848603 aatctctataaagctctttctgacaatggaatccgaaccttcattgatgacaaggatcttcagagtggtgatgagatcacaccttcgctcctcaagaaca 26848702  T
Q  250 ttgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagac 349  Q
    ||||||| || | ||| | |||||   |||| ||||  ||||||||  ||||||| |||||||||||||||||||||||||||||||| |||| ||||      
T  26848703 ttgaagactcgaggatttccattcttgtattctctgagaactatgccacttcttcgttttgtttggacgaacttgtccacatcattcattgctccaagga 26848802  T
Q  350 aaagggt 356  Q
    |||||||    
T  26848803 aaagggt 26848809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #54
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 27214498 - 27214557
Alignment:
Q  288 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 347  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  27214498 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27214557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #55
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 288 - 347
Target Start/End: Complemental strand, 27234730 - 27234671
Alignment:
Q  288 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 347  Q
    ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||| ||||    
T  27234730 aactatgctacttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27234671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #56
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 291 - 339
Target Start/End: Original strand, 26949745 - 26949793
Alignment:
Q  291 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcact 339  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||||    
T  26949745 tatgcttcttcttcattttgtttagacgaacttgtccatatcattcact 26949793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #57
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 27665223 - 27665169
Alignment:
Q  288 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    ||||||||  |||||||||||||||| || |||||||||||||||||||| ||||    
T  27665223 aactatgctacttcttcattttgtttagatgaacttgtccacatcattcattgct 27665169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #58
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 338
Target Start/End: Complemental strand, 28098475 - 28098425
Alignment:
Q  288 aactatgcatcttcttcattttgtttggacgaacttgtccacatcattcac 338  Q
    |||||||| |||||||  ||||||||||| |||||||||||||||||||||    
T  28098475 aactatgcttcttctttgttttgtttggatgaacttgtccacatcattcac 28098425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #59
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 26635774 - 26635825
Alignment:
Q  291 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| ||||    
T  26635774 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26635825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #60
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 26741740 - 26741791
Alignment:
Q  291 tatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    ||||| |||||||  ||||||||||| |||||||||||||||||||| ||||    
T  26741740 tatgcttcttctttgttttgtttggatgaacttgtccacatcattcattgct 26741791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #61
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 337
Target Start/End: Original strand, 26959250 - 26959296
Alignment:
Q  291 tatgcatcttcttcattttgtttggacgaacttgtccacatcattca 337  Q
    ||||| |||||||| |||| |||||| ||||||||||||||||||||    
T  26959250 tatgcttcttcttcgttttatttggatgaacttgtccacatcattca 26959296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #62
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 325
Target Start/End: Complemental strand, 25507090 - 25506978
Alignment:
Q  213 agaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtt 312  Q
    |||||||||||||  ||||||||| || |||  |||||||||||||| | ||| || |||||  |  |||||  ||||||||| |||||   ||||||||    
T  25507090 agaggagatgaaatcacaccatcagtcgtcatcgccattgaagaatctaggatttttattccggttctttctatcaactatgcctcttcaaaattttgtt 25506991  T
Q  313 tggacgaacttgt 325  Q
    |||| ||||||||    
T  25506990 tggaggaacttgt 25506978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #63
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 167
Target Start/End: Complemental strand, 28098726 - 28098596
Alignment:
Q  40 atctcatggctatgc---aaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggta 136  Q
    |||||||||||||||   || || ||| ||||| ||||||| | || |||| |||||| ||  | ||||| || | |||||||||||  |||| ||||||    
T  28098726 atctcatggctatgctccaatcatcttcctctttctcttcattctcttatggattcacctatgacgtgtttcttaattttaggggcaccgacactcggta 28098627  T
Q  137 cggttttacgggcaatctctacaaggctctt 167  Q
     |||||||| || ||||||||||| ||||||    
T  28098626 tggttttactggaaatctctacaaagctctt 28098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 43 - 356
Target Start/End: Complemental strand, 3773 - 3459
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    |||||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| || ||||||||||||| ||||| |||| |||||||    
T  3773 tcatggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttccttagttttaggggcactgacactcggcacggttt 3674  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||    
T  3673 taccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctc 3574  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaa-ctatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgc 341  Q
    ||||||||||| ||||| | ||| || |||||  | ||||||  ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3573 aaggccattgatgaatctaggatttttattcctgtgttttctatcaacctatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgc 3474  T
Q  342 tacaagacaaagggt 356  Q
    |||||||||||||||    
T  3473 tacaagacaaagggt 3459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 41 - 356
Target Start/End: Complemental strand, 14708 - 14394
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||| ||| |||||| ||| ||| ||||| ||||||||| ||||||||||||||||||  ||||||||||||||| ||||| |||| |||||    
T  14708 tctcatggctatacaatcaccttcctcatccacttcattttcctatggattcacttaccaagtgttcatcagttttaggggcactgacactcggcacggt 14609  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  14608 tttaccggaaatctctacaaggctcttactgacaagggaatccataccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 14509  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    ||||||||||||| ||||| | ||| || |||||  | ||||||  ||||||||| | |||||| |||||||||||||||||||||||||| ||||||||    
T  14508 tcaaggccattgatgaatctaggatttttattcctgtgttttctatcaactatgcct-ttcttcgttttgtttggacgaacttgtccacataattcactg 14410  T
Q  341 ctacaagacaaagggt 356  Q
    ||||||||||||||||    
T  14409 ctacaagacaaagggt 14394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 8154 - 8061
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcgg 134  Q
    |||||||||||| ||| |||||| ||| ||||||||| | ||| ||| |||||||||||||||||| |||||||||||||||| ||||| ||||    
T  8154 tctcatggctatacaatcaccttcctcatcctcttcattctcccatggattcacttaccaagtgttcctcagttttaggggcactgacactcgg 8061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 5e-78; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 41 - 380
Target Start/End: Complemental strand, 18724425 - 18724086
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| |||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||| || ||||||||||||| |||  |||||    
T  18724425 tctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggt 18724326  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| ||  |||||||||||||||||| ||||||||||||||| || |||||||||| |  ||| ||  | ||||| |||||||  | ||||||||||     
T  18724325 tttactggtcatctctacaaggctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcg 18724226  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
     ||| ||||||||||| || | ||||||||||||  | ||||||  ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  18724225 acaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttgaacgaacttgtccacatcatgcactg 18724126  T
Q  341 ctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    |||||||||||||||| ||   ||||||||| ||||||||    
T  18724125 ctacaagacaaagggtcgtcttgttttgcctgttttctat 18724086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 43 - 380
Target Start/End: Complemental strand, 18679905 - 18679568
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    |||||||||||||| |||||| ||| | ||||||| ||||||||  |||||||||||||||||| ||||| || ||||||||||||| |||  |||||||    
T  18679905 tcatggctatgcaatcaccttcctcattctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttt 18679806  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||| ||  |||||||||||||||||| |||||| |||||||| || |||||||||| |  ||| ||  | ||||| |||||||  | ||||||||||  |    
T  18679805 tactggtcatctctacaaggctcttactgacaaaggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgac 18679706  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    || ||||||||||| || | ||||||||||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18679705 aatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgct 18679606  T
Q  343 acaagacaaagggttgttcggttttgcctattttctat 380  Q
    |||||||||||||| ||   ||||||||| ||||||||    
T  18679605 acaagacaaagggtcgtcttgttttgcctgttttctat 18679568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 43 - 380
Target Start/End: Complemental strand, 18731842 - 18731505
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    |||||||||||||| |||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||| || ||||||||||||| |||  |||||||    
T  18731842 tcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtgacggttt 18731743  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||| ||| |||||||||  ||||||| ||||||||||||||| || |||||||||| |  ||| ||  | ||||| |||||||  | ||||||||||  |    
T  18731742 tactggccatctctacagagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagaggggatgaaatcaaaccatcactcgac 18731643  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    || ||||||||||| || | ||||||||||||  | ||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  18731642 aatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcatgcactgct 18731543  T
Q  343 acaagacaaagggttgttcggttttgcctattttctat 380  Q
    |||||||||||||| ||   ||||||||| ||||||||    
T  18731542 acaagacaaagggtcgtcttgttttgcctgttttctat 18731505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 41 - 380
Target Start/End: Complemental strand, 18699740 - 18699401
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| |||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||| || ||||||| ||||| |||  |||||    
T  18699740 tctcatggctatgcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcactgacactcgtgacggt 18699641  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| ||| |||||||||| ||||||| ||||||||||||||| || |||||||||| |  ||| ||  | || || |||||||  | ||||||||||     
T  18699640 tttactggccatctctacaaagctcttactgacaagggaatccacaccttcattgatgaccgtgacctgcaaagtggggatgaaatcaaaccatcactcg 18699541  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
     ||| ||||||||||| || | ||||||||||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  18699540 acaatgccattgaagagtctaggatcttcattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgttcacatcattcactg 18699441  T
Q  341 ctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    |||||||||||| ||| ||   ||||||||| ||||||||    
T  18699440 ctacaagacaaaaggtcgtctcgttttgcctgttttctat 18699401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 43 - 356
Target Start/End: Complemental strand, 18655815 - 18655502
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    ||||||||| |||| |||||| ||| ||||||||| ||||||||  |||||||||||||||||| ||||| || ||||||||||||| |||  |||||||    
T  18655815 tcatggctaggcaatcaccttcctcatcctcttcattttcctatcgattcacttaccaagtgttcctcagcttcaggggcagtgacactcgtaacggttt 18655716  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||| ||  |||||||||| ||||||| ||||||||||||||| || |||||||||| |  ||| ||  | || || |||||||  | ||||||||||  |    
T  18655715 tactgggcatctctacaaagctcttactgacaagggaatccacaccttcattgatgaccgtgagctgcaaagtggggatgaaatcaaaccatcactcgac 18655616  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    || |||||| |||| || | |||||| |||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||    
T  18655615 aatgccattcaagagtctaggatctttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccgcatcattcactgct 18655516  T
Q  343 acaagacaaagggt 356  Q
    ||||||||||||||    
T  18655515 acaagacaaagggt 18655502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 41 - 358
Target Start/End: Original strand, 18073599 - 18073913
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    ||||||||| ||||||  |||||||| |||||||||| ||||||||||||||| |||| | ||||| |||| || || |||||  |||| ||||||||||    
T  18073599 tctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggt 18073698  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatga------tctttacagaggagatgaaaagacaccat 234  Q
    || || ||||||||||  ||||||||||||||||||||||| | ||| |||  ||||| ||||||      |||| | ||| ||||   |||| ||| |     
T  18073699 ttcaccggcaatctcttgaaggctcttattgacaagggaattcgtaccttccatgatgacgatgacagtgatcttcaaagaagagac--aaagtcac-ac 18073795  T
Q  235 cactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcat 334  Q
    || |||| |      |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  18073796 caatcatta------ttgaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcat 18073889  T
Q  335 tcactgctacaagacaaagggttg 358  Q
    |||||||||||| || ||||||||    
T  18073890 tcactgctacaaaaccaagggttg 18073913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 346
Target Start/End: Complemental strand, 17989390 - 17989088
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    ||||||||| ||||||  |||||||| |||||||||| ||||||||||||||| |||| | ||||| |||| || || |||||  |||| ||||||||||    
T  17989390 tctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggt 17989291  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatga------tctttacagaggagatgaaaagacaccat 234  Q
    || || ||||||||||  ||||||||||||||||||||||| | ||| |||  ||||| ||||||      |||| | ||| ||||   |||| ||| |     
T  17989290 ttcaccggcaatctcttgaaggctcttattgacaagggaattcgtaccttccatgatgacgatgacagtgatcttcaaagaagagac--aaagtcac-ac 17989194  T
Q  235 cactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcat 334  Q
    || |||| |      |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  17989193 caatcatta------ttgaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcat 17989100  T
Q  335 tcactgctacaa 346  Q
    ||||||||||||    
T  17989099 tcactgctacaa 17989088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 380
Target Start/End: Complemental strand, 5091059 - 5090968
Alignment:
Q  289 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggttgttcggttttgcctattttctat 380  Q
    ||||||| |||||||| |||||||| || ||||||||||| || |||||||||| ||||  ||| |||||   |||||||||||||||||||    
T  5091059 actatgcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaaggaaaatggttgcctggttttgcctattttctat 5090968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 45 - 356
Target Start/End: Complemental strand, 5020 - 4709
Alignment:
Q  45 atggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggtttta 144  Q
    |||||||| ||| |||||| ||| ||||||||| ||||||||| |||||||||||||||||| |||||||||||||||| ||||| |||  |||||||||    
T  5020 atggctatacaatcaccttcctcatcctcttcattttcctatggattcacttaccaagtgttcctcagttttaggggcattgacactcgccacggtttta 4921  T
Q  145 cgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaa 244  Q
    | || ||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||| |||  |||    
T  4920 ccggaaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatccctccgcaa 4821  T
Q  245 ggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctac 344  Q
    ||||||||| ||||| | ||| || |||||  | ||||||  |  |||||| | |||||| |||||||||||||||||||||||||| ||||||||||||    
T  4820 ggccattgatgaatctaggatttttattcctgtgttttctatcttctatgccttttcttcgttttgtttggacgaacttgtccacataattcactgctac 4721  T
Q  345 aagacaaagggt 356  Q
    ||||||||||||    
T  4720 aagacaaagggt 4709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 43 - 352
Target Start/End: Complemental strand, 13983 - 13674
Alignment:
Q  43 tcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttt 142  Q
    ||||||||||||||  ||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||||| |||  |||||||    
T  13983 tcatggctatgcaattaccttcctcttcctcttcattttcctctgcattcacttaccaagtgttcctcagttttaggggcactgacactcgccacggttt 13884  T
Q  143 tacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatc 242  Q
    ||| |||||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  |||||||||||| ||    
T  13883 taccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcctc 13784  T
Q  243 aaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    |||||||| |||||||| | ||| || |||||  | ||||||  |||||| ||  ||||   |||||| |||||||||||||| ||||| ||||| ||||    
T  13783 aaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattgct 13684  T
Q  343 acaagacaaa 352  Q
    ||||||||||    
T  13683 acaagacaaa 13674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 41 - 350
Target Start/End: Original strand, 7359 - 7668
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| |||||  ||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||| ||||| |||  |||||    
T  7359 tctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggt 7458  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| |||||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  7459 tttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 7558  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
    |||||||||| |||||||| | ||| || |||||  | ||||||  |||||| ||  ||||   |||||| |||||||||||||| ||||| ||||| ||    
T  7559 tcaaggccatcgaagaatctaggatttttattcctgtgttttctatcaactacgccacttcaaaattttgcttggacgaacttgttcacattattcattg 7658  T
Q  341 ctacaagaca 350  Q
    ||||||||||    
T  7659 ctacaagaca 7668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 65 - 356
Target Start/End: Complemental strand, 28164678 - 28164387
Alignment:
Q  65 ctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggct 164  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||| |||  ||||||| || ||| ||||||| |||||     
T  28164678 ctcttcctcttcaatttcctatggattcacataccaagtgttcctcagttttaggggcagtgacactcgtgacggtttcactggccatctctataaggcc 28164579  T
Q  165 cttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacga 264  Q
    |||   ||||||||||| || |||||||||||||    ||||||| | |||||||| ||||  ||||| ||| ||||||||||||||||| ||||    |    
T  28164578 cttgacgacaagggaattcacacattcattgatgattgtgatcttgagagaggagaagaaatcacaccgtcattcatcaaggccattgaaaaatcttgaa 28164479  T
Q  265 tcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggt 356  Q
    | || |||||  | || |||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28164478 tttttattcctgtgttatctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggt 28164387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 68 - 356
Target Start/End: Complemental strand, 28127993 - 28127704
Alignment:
Q  68 ttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctctt 167  Q
    |||||||||||||||||||| |||||| ||||||||||| ||||| || ||||||||||||| |||  ||||||| || ||| ||||||||||||| |||    
T  28127993 ttcctcttcaatttcctatggattcacataccaagtgttcctcagcttcaggggcagtgacactcgtgacggtttcactggccatctctacaaggccctt 28127894  T
Q  168 attgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaag-acaccatcactcatcaaggccattgaagaatccacgatc 266  Q
      ||||||||||||||| |||||||||||||    | ||||| | ||||||||  ||||  ||||| |||||  | ||||||||||||||||| |  ||     
T  28127893 tatgacaagggaatccacacattcattgatgattgtaatcttgagagaggagaaaaaaatcacaccgtcacttttaaaggccattgaagaatctagaatt 28127794  T
Q  267 ttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggt 356  Q
    || |||||  |||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28127793 tttattcctgtattttctaccaactatgcctcttcttcattttgtttggacgaacttgtgcacatcattcactgctacaagacaaagggt 28127704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 41 - 356
Target Start/End: Complemental strand, 268697 - 268382
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| |||||| ||||||||||||||| || |||| |||  | ||||| || || ||||  || || ||| |||||| |||  | |||    
T  268697 tctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggatttgcctaccaggtcttcctcaacttcagaggcggtgacactcgtgagggt 268598  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||  ||| |||||||||||||||||| ||||||||||||||| || ||||||||||    ||| ||| | ||||| |||||||  | ||||||||||     
T  268597 tttattggccatctctacaaggctcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaaccatcactcg 268498  T
Q  241 tcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactg 340  Q
     ||| ||||||||||| || | ||| || |||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  268497 acaatgccattgaagagtctaggatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcactg 268398  T
Q  341 ctacaagacaaagggt 356  Q
    |||||||| |||||||    
T  268397 ctacaagaaaaagggt 268382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 41 - 259
Target Start/End: Complemental strand, 270 - 52
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    |||||||||||||||| |||||  ||||||||||||| |||| ||||||||||||||||||||||| || ||||||||||||| ||||| |||  |||||    
T  270 tctcatggctatgcaatcacctccctcttcctcttcattttcatatgcattcacttaccaagtgttccttagttttaggggcactgacactcgccacggt 171  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactca 240  Q
    ||||| |||||||||||||||||||||| ||||||||||||| | || |||||||||| | |||||||| | |||||||||||||  ||||||||||||     
T  170 tttaccggcaatctctacaaggctcttactgacaagggaatcaaaaccttcattgatgacaatgatcttcaaagaggagatgaaatcacaccatcactcc 71  T
Q  241 tcaaggccattgaagaatc 259  Q
    |||||||||| ||||||||    
T  70 tcaaggccatcgaagaatc 52  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 39 - 356
Target Start/End: Complemental strand, 29274125 - 29273808
Alignment:
Q  39 aatctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacg 138  Q
    |||||||||||||||||| |||||| ||||||||||||||| || |||| |||||||||||| || || ||||  ||||| ||| |||||| |||  |||    
T  29274125 aatctcatggctatgcaatcaccttcctcttcctcttcaatctcatatggattcacttaccaggtcttcctcaactttagaggcggtgacactcgtgacg 29274026  T
Q  139 gttttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcact 238  Q
    ||||||  ||| ||||||||||| |||||| ||||||||||||||| || ||||||||||    ||| ||| | ||||| |||||||  | | |||||||    
T  29274025 gttttattggccatctctacaagactcttactgacaagggaatccacaccttcattgatgatcgtgaacttcaaagaggggatgaaatcaaatcatcact 29273926  T
Q  239 catcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcac 338  Q
    |  ||| | ||||||||| || |  || || |||||  | ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29273925 cgacaatgtcattgaagagtctagaatttttattcctgtgttttctatcaactatgcctcttcttcattttgtttggacgaacttgtccacatcattcac 29273826  T
Q  339 tgctacaagacaaagggt 356  Q
    ||||||||||||||||||    
T  29273825 tgctacaagacaaagggt 29273808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 41 - 358
Target Start/End: Original strand, 59407 - 59721
Alignment:
Q  41 tctcatggctatgcaaccacctttctcttcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggt 140  Q
    ||||||||| ||||||  |||||||| |||||||||| ||||||||||||||| |||| | ||||| |||| || || |||||  |||| ||||||||||    
T  59407 tctcatggccatgcaattacctttctattcctcttcattttcctatgcattcagttacgatgtgttcctcatttgtaagggcaccgacactcggtacggt 59506  T
Q  141 tttacgggcaatctctacaaggctcttattgacaagggaatccatacattcattgatggcgatga------tctttacagaggagatgaaaagacaccat 234  Q
    || || ||||||||||  ||||||||||||||||||||||| | ||| |||  ||||| ||||||      |||| | ||| ||||   |||| ||| |     
T  59507 ttcaccggcaatctcttgaaggctcttattgacaagggaattcgtaccttccatgatgacgatgacagtgatcttcaaagaagagac--aaagtcac-ac 59603  T
Q  235 cactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcat 334  Q
    || |||| |      |||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  59604 caatcatta------ttgaagaatccaggattttgattcccatattttctgccaactatgcatcttcttcatcttgtttggacacacttgtccacatcat 59697  T
Q  335 tcactgctacaagacaaagggttg 358  Q
    |||||||||||| || ||||||||    
T  59698 tcactgctacaaaaccaagggttg 59721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 81 - 347
Target Start/End: Original strand, 34599 - 34865
Alignment:
Q  81 tcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaa 180  Q
    ||||||| |||||| ||  | ||||| || |||||||| || ||||||| ||| || |||||||| |  |||||||| |  ||||||  | |||||||||    
T  34599 tcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgctatggttttaccgaaaatctctatagagctctttgtcacaagggaa 34698  T
Q  181 tccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatatt 280  Q
    |||| || |||||||||| |   || ||| |  ||||||||||||  |||||||||||  |||||||||||||||| || | ||| ||||||||  | ||    
T  34699 tccacaccttcattgatgacagggagcttcaaggaggagatgaaataacaccatcacttttcaaggccattgaagagtctaggattttcattcctgtctt 34798  T
Q  281 ttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgctacaag 347  Q
     |||  ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  34799 gtctatcaattatgcttcttcttcattttgcttggacgaacttgtccacatcattcactgcttcaag 34865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 42987 - 43107
Alignment:
Q  228 acaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtcc 327  Q
    |||||||||||  |||||||||||||||| || | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||||||||||||||||    
T  42987 acaccatcacttttcaaggccattgaagagtctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgcttggacgaacttgtcc 43086  T
Q  328 acatcattcactgctacaaga 348  Q
    ||||||||||||||| |||||    
T  43087 acatcattcactgctgcaaga 43107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 27455 - 27588
Alignment:
Q  214 gaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgttt 313  Q
    |||| |||||||  ||| |||||||  |||||| |||||||||||| | ||| ||||||||  | || |||  ||| ||||| |||||||||||||| ||    
T  27455 gaggtgatgaaataacatcatcacttttcaaggtcattgaagaatctaggattttcattcctgtcttgtctatcaattatgcttcttcttcattttgctt 27554  T
Q  314 ggacgaacttgtccacatcattcactgctacaag 347  Q
    |||||||||||||||||||||||| |||| ||||    
T  27555 ggacgaacttgtccacatcattcattgcttcaag 27588  T

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Target: scaffold0038; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 69 - 342
Target Start/End: Original strand, 116658 - 116931
Alignment:
Q  69 tcctcttcaatttcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctctta 168  Q
    ||||||||  ||||||||| |||||| ||  | ||||| || |||||||| || ||||||| ||| || |||||||| || ||||||||||| | ||||     
T  116658 tcctcttccttttcctatggattcacctatgacgtgttccttagttttagaggtagtgacactcgttatggttttactggaaatctctacaaagatcttt 116757  T
Q  169 ttgacaagggaatccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatctt 268  Q
     |   ||| |||| | ||| |||||||||| | | || ||| |  |||| || ||||  ||||| |||||  |||||||||||||||| || | ||| ||    
T  116758 gtaggaagagaattcgtaccttcattgatgacaaagaccttcaacgaggtgacgaaataacaccgtcacttttcaaggccattgaagagtctaggatttt 116857  T
Q  269 cattcccatattttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    |||||| || || |||  ||| ||||| |||||||| ||||| ||||| |||||||||||||| ||||||||||    
T  116858 cattcctattttgtctatcaattatgcttcttcttccttttgcttggatgaacttgtccacattattcactgct 116931  T

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Target: scaffold0019 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 81 - 342
Target Start/End: Complemental strand, 58595 - 58334
Alignment:
Q  81 tcctatgcattcacttaccaagtgttactcagttttaggggcagtgacaatcggtacggttttacgggcaatctctacaaggctcttattgacaagggaa 180  Q
    ||||||| |||||| || || ||||| || || ||||| ||  |||||| ||| || |||||||| || ||||||||||  ||||||  |||||||||||    
T  58595 tcctatggattcacctatcacgtgttccttagctttagaggttgtgacactcgctatggttttactggaaatctctacagagctctttgtgacaagggaa 58496  T
Q  181 tccatacattcattgatggcgatgatctttacagaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatatt 280  Q
    |||  || ||||| |||| |   || ||| |  |||| || ||||  |||||||||||  ||||||||||| |||| || | ||| ||||||||| | ||    
T  58495 tccgaaccttcatggatgacagagagcttcaaggaggtgacgaaataacaccatcacttttcaaggccattaaagagtctaggattttcattcccgtctt 58396  T
Q  281 ttctgccaactatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
     |||  ||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  58395 gtctatcaactatgcttcttcttcattttgcttgaacgaacttgtccacatcattcactgct 58334  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 342
Target Start/End: Original strand, 3279695 - 3279823
Alignment:
Q  214 gaggagatgaaaagacaccatcactcatcaaggccattgaagaatccacgatcttcattcccatattttctgccaactatgcatcttcttcattttgttt 313  Q
    |||| |||||||  |||| ||||||  |||||||||| ||||| |||| ||| || |||||  | || |||  ||||||||| ||||||  |||||||||    
T  3279695 gaggtgatgaaatcacacaatcacttgtcaaggccatcgaagagtccatgatttttattccggtcttctctatcaactatgcttcttctatattttgttt 3279794  T
Q  314 ggacgaacttgtccacatcattcactgct 342  Q
    |||||||||||||||||||||||| ||||    
T  3279795 ggacgaacttgtccacatcattcattgct 3279823  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 17993789 - 17993736
Alignment:
Q  289 actatgcatcttcttcattttgtttggacgaacttgtccacatcattcactgct 342  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||    
T  17993789 actatgcttcttcttcattttgtttagacgaacttgtccacatcattcaatgct 17993736  T

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