View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_low_11 (Length: 351)
Name: NF15758_low_11
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 14 - 335
Target Start/End: Complemental strand, 5044815 - 5044494
Alignment:
| Q |
14 |
ataatactttcttaagcaatgtgagaccaattaagactccatttggatgtttcttatctctcactaatctcaataatccaaccaaaagactcaaacttga |
113 |
Q |
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| T |
5044815 |
ataatactttcttaagcaatgtgagaccaattaagactccatttggatgtttcttatctctcactaatctcaataatccaaccaaaagactcaaacttga |
5044716 |
T |
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| Q |
114 |
aacaatctcaaccatagtttcatttccttccaattccatcaacaacatttcaatcaatttagcacaattcatctttgtttcaatagttccctcattcatg |
213 |
Q |
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| T |
5044715 |
aacaatctcaaccatagtttcatttccttccaattccatcaacaacatttcaatcaatttagcacaattcatctttgtttcaatagttccctcattcatg |
5044616 |
T |
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| Q |
214 |
atatcaacaaccaatgaaactttacctggatgcgtaagatgttttctcttcaattctaaactcaaatccaaattcacaatgataccaatagcttcacaac |
313 |
Q |
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| T |
5044615 |
atatcaacaaccaatgaaactttacctggatgcataagatgttttctcttcaattctaaactcaaatccaaattcacaatgataccaatagcttcacaac |
5044516 |
T |
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| Q |
314 |
caacaacatgtgaggtaaaaga |
335 |
Q |
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| T |
5044515 |
caacaacatgtgaagtaaaaga |
5044494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 172 - 333
Target Start/End: Original strand, 26379821 - 26379981
Alignment:
| Q |
172 |
ttagcacaattcatctttgtttcaatagttccctcattcatgatatcaacaaccaatgaaactttacctggatgcgtaagatgttttctcttcaattcta |
271 |
Q |
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| T |
26379821 |
ttagcacaattcatctttgtttcaatagttccctcattcgtaatatcaacaaccaatcaaagtt-agctcgatgcataagatttattctcttcaattcta |
26379919 |
T |
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| Q |
272 |
aactcaaatccaaattcacaatgataccaatagcttcacaaccaacaacatgtgaggtaaaa |
333 |
Q |
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| T |
26379920 |
aactcaaatccaaattcacaaggataccaatagcttcacaatcaacaacatgtgaagtaaaa |
26379981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 172 - 321
Target Start/End: Complemental strand, 6133419 - 6133270
Alignment:
| Q |
172 |
ttagcacaattcatctttgtttcaatagttccctcattcatgatatcaacaaccaatgaaactttacctggatgcgtaagatgtttt-ctcttcaattct |
270 |
Q |
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| T |
6133419 |
ttagcacaattcatctttgtttcaatagttccctcattcgtaatatcaacaaccaatcaaagtt-agctcgatgcataagatttttttctcttcaattct |
6133321 |
T |
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| Q |
271 |
aaactcaaatccaaattcacaatgataccaatagcttcacaaccaacaaca |
321 |
Q |
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| T |
6133320 |
aaactcaaatccaaattcagaaggataccaatagcttcacaaccaacaaca |
6133270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 323
Target Start/End: Original strand, 20004405 - 20004456
Alignment:
| Q |
272 |
aactcaaatccaaattcacaatgataccaatagcttcacaaccaacaacatg |
323 |
Q |
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| T |
20004405 |
aactcaaatccaaattcacaatgatcctaatagtttcacacccagcaacatg |
20004456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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