View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_low_12 (Length: 321)
Name: NF15758_low_12
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_12 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 11395802 - 11396122
Alignment:
| Q |
1 |
ttgtgtggaatttgtgataggaagatgaacaatgcatccaatggatttcaagcctcgcaacatcgatcgcaaccatcgcatcgagatatagagtgagaaa |
100 |
Q |
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| T |
11395802 |
ttgtgtggaatttgtgataggaagatgaacaatgcatccaatggatttcaagcctcgcaacatcgatcgcaaccgtcgcatcgagatatagagtgagaaa |
11395901 |
T |
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| Q |
101 |
cagcgtatttgannnnnnnncgagatttgaattttcaagtttgaaaatatatgcaaccgttttagcttattcattaacttcgtgtttctgaaatgaattt |
200 |
Q |
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| T |
11395902 |
cagcatatttgattttttttcgagatttgaattttcaagtttgaaaatatatgcaaccgttttagcttattcattaacttcgtgtttctgaattgaattt |
11396001 |
T |
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| Q |
201 |
cacgaattctgtataacgctatgttcgaatcatgtgaaattataagatctagaaacgaattatgtgtatcagttcaaattcatgcttatttatagtcgaa |
300 |
Q |
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| T |
11396002 |
cacgaattctgtataaagctatgttcgaatcatgtgaaattataagatctagaaacgaattatgtgtatcagttcaaattcattcttatttatagtcgaa |
11396101 |
T |
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| Q |
301 |
tcatgtgtttcagttcaaatt |
321 |
Q |
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| T |
11396102 |
tcatgtgtttcagttcaaatt |
11396122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 11395667 - 11395708
Alignment:
| Q |
214 |
taacgctatgttcgaatcatgtgaaattataagatctagaaa |
255 |
Q |
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| T |
11395667 |
taacgctatgttcgaatcatgtgaaattaatggatctagaaa |
11395708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 12848822 - 12848858
Alignment:
| Q |
206 |
attctgtataacgctatgttcgaatcatgtgaaattat |
243 |
Q |
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| T |
12848822 |
attctgtataacgctatg-tcgaatcatgtgaaattat |
12848858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 238
Target Start/End: Original strand, 12849110 - 12849142
Alignment:
| Q |
206 |
attctgtataacgctatgttcgaatcatgtgaa |
238 |
Q |
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| T |
12849110 |
attctgcataacgctatgttcgaatcatgtgaa |
12849142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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