View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_low_15 (Length: 310)
Name: NF15758_low_15
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 33402874 - 33402589
Alignment:
| Q |
19 |
aaaattctcattagtgttaattgtaatactttcttttgaggctagagagacaattgcttctctttttggtaaagtatcggttacaataatcaacgatatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33402874 |
aaaattctcattagtgttaattgtaatactttcttttgaggctagagagacaattgcttctctttttggtaaagtatcggttacaataatcaatgatatg |
33402775 |
T |
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| Q |
119 |
aggcaaaa------ccctacaaatatcacttttcattgcaaatcgaaaaacgatgatcttggatttcacacactcacgtttggaggaagatacacatttt |
212 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33402774 |
aggcaaaatcatatccctacaaatatcacttttcattgcaaatcaaaaaacgatgatcttggatttcacacactcacgtttggaggaagttacacatttt |
33402675 |
T |
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| Q |
213 |
catttaggccacaattgtttggagcaacgttattcttttgcagatttacatggcaaggaagcttgcacccttattactttgatatt |
298 |
Q |
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| T |
33402674 |
catttaggccacaattgtttggagcaacgttattcttttgcagatttacatggcaaggaagcttgcacccttattactttgatatt |
33402589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 596355 - 596295
Alignment:
| Q |
137 |
atcacttttcattgcaaatcgaaaaacgatgatcttggatttcacacactcacgtttggag |
197 |
Q |
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| T |
596355 |
atcacttttaattgcaaatccaaagatgatgatcttggagttcacacactcatgtttggag |
596295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 31121319 - 31121371
Alignment:
| Q |
144 |
ttcattgcaaatcgaaaaacgatgatcttggatttcacacactcacgtttgga |
196 |
Q |
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| T |
31121319 |
ttcattgcaaatccaaaaatgatgatcttggatttcacacaatcatgtttgga |
31121371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 32258502 - 32258442
Alignment:
| Q |
127 |
ccctacaaatatcacttttcattgcaaatcgaaaaacgatgatcttggatttcacacactc |
187 |
Q |
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|||| ||||||||||| ||||||||||||| ||| | || ||||||||||||||||||||| |
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| T |
32258502 |
ccctgcaaatatcactcttcattgcaaatctaaagatgaagatcttggatttcacacactc |
32258442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 6631854 - 6631910
Alignment:
| Q |
131 |
acaaatatcacttttcattgcaaatcgaaaaacgatgatcttggatttcacacactc |
187 |
Q |
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||||| |||||||||||||| ||||| | | | || ||||||||||||||||||||| |
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| T |
6631854 |
acaaacatcacttttcattgtaaatctagagatgacgatcttggatttcacacactc |
6631910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 5922427 - 5922349
Alignment:
| Q |
144 |
ttcattgcaaatcgaaaaacgatgatcttggatttcacacactcacgtttggaggaagatacacattttcatttaggcc |
222 |
Q |
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||||||||||||| ||| | ||||||||||||||||||||| ||| |||| ||| || |||| |||||||||||||| |
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| T |
5922427 |
ttcattgcaaatcaaaagatgatgatcttggatttcacacaatcaagtttagagaaatttacatgttttcatttaggcc |
5922349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 222
Target Start/End: Complemental strand, 5931558 - 5931480
Alignment:
| Q |
144 |
ttcattgcaaatcgaaaaacgatgatcttggatttcacacactcacgtttggaggaagatacacattttcatttaggcc |
222 |
Q |
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|
||||||||||||| ||| | ||||||||||||||||||||| ||| |||| ||| || || | ||||||||||||||| |
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| T |
5931558 |
ttcattgcaaatcaaaagatgatgatcttggatttcacacaatcaagtttagagaaatttatatattttcatttaggcc |
5931480 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 10973385 - 10973455
Alignment:
| Q |
146 |
cattgcaaatcgaaaaacgatgatcttggatttcacacactcacgtttggaggaagatacacattttcatt |
216 |
Q |
| |
|
||||||||||| ||| | || ||||||||||||||||||||||| |||||| || |||||| |||||||| |
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| T |
10973385 |
cattgcaaatctaaagatgacgatcttggatttcacacactcacaattggagaaaaatacacgttttcatt |
10973455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 10999787 - 10999857
Alignment:
| Q |
146 |
cattgcaaatcgaaaaacgatgatcttggatttcacacactcacgtttggaggaagatacacattttcatt |
216 |
Q |
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| T |
10999787 |
cattgtaaatccaaagatgacgatcttggatttcacacactcacaattggagaaaaatacacattttcatt |
10999857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 19297666 - 19297728
Alignment:
| Q |
126 |
accctacaaatatcacttttcattgcaaatcgaaaaacgatgatcttggatttcacacactca |
188 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||||| | || ||| | |||||||||||||||| |
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| T |
19297666 |
accccacaaatatcactcttcattgtaaatcgaaagatgacgatttaggatttcacacactca |
19297728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 17373953 - 17373893
Alignment:
| Q |
137 |
atcacttttcattgcaaatcgaaaaacgatgatcttggatttcacacactcacgtttggag |
197 |
Q |
| |
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||||||||| |||||||||| ||| | |||||||||||| |||| ||||||| |||||||| |
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| T |
17373953 |
atcacttttaattgcaaatctaaagatgatgatcttggagttcatacactcatgtttggag |
17373893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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