View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15758_low_16 (Length: 309)
Name: NF15758_low_16
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 5389956 - 5390249
Alignment:
| Q |
1 |
ctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttattgatatctgtaatctatctatctatatgtatcagtttgttgtgagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5389956 |
ctaatattgaaagccttccgtgatgagagattgtggccgtggtttatgtgttattgatatctgtaatctatctatctatatgtatcagtttgttgtgagt |
5390055 |
T |
|
| Q |
101 |
gtgaaggtgttatggtatcaaaattatatatttaaataacctttatcaggctttactggttatgtccagtgatgaaaatatatattatttgtttgc--ta |
198 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
5390056 |
gtgaaagtgttatggtatcaaaattatatatttaaataacctttatcaggctttactggttatgtccagtgatgaaaatgtatattatttgtttgctata |
5390155 |
T |
|
| Q |
199 |
tatgtattttgtattgccccatgttatatggttatacagattgaaataaaattcacatgtgttttttgtgtctcagactatcacaatacgtagc |
292 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390156 |
tatgtattttgtattgtcccatgttataaggttatacagattgaaataaaattcacatgtgttttttgtgtctcagactatcacaatacgtagc |
5390249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 5393675 - 5393815
Alignment:
| Q |
1 |
ctaatattgaaagccttccgtgatgagagattgtggccgtggtttacgtgttattgatatctgtaatctatctatctatatgtatcagtttgttgt--ga |
98 |
Q |
| |
|
|||| ||||| |||||||||||||||||| |||||| | ||||||| ||||||| ||| ||||||||||||||||||||||||||||||| || |
|
|
| T |
5393675 |
ctaaaattgacagccttccgtgatgagaggttgtggtcatggtttatgtgttat-------tgttatctatctatctatatgtatcagtttgttgtacga |
5393767 |
T |
|
| Q |
99 |
gtgtgaaggtgttatggtatcaaaattatatatttaaataacctttat |
146 |
Q |
| |
|
||||||| || ||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5393768 |
gtgtgaaagtactatggtatcaaaattatatgtttaaataacctttat |
5393815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 178 - 292
Target Start/End: Original strand, 5393870 - 5393997
Alignment:
| Q |
178 |
atatatattatttgtttgctatatgtattttgtatt---gccccatgttatatggttatacag----------attgaaataaaattcacatgtgttttt |
264 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
5393870 |
atatatattatttgtgtgctatatgtattttgtattattgtcccatgttatatgcttatacaggtgtatgcagattgaaataaaattcacatgtgtttct |
5393969 |
T |
|
| Q |
265 |
tgtgtctcagactatcacaatacgtagc |
292 |
Q |
| |
|
||||||| || | ||||||||||||||| |
|
|
| T |
5393970 |
tgtgtctgagtccatcacaatacgtagc |
5393997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 5398843 - 5398892
Alignment:
| Q |
6 |
attgaaagccttccgtgatgagagattgtggccgtggtttacgtgttatt |
55 |
Q |
| |
|
||||||| |||||| |||||||||||||||||| |||||| |||||||| |
|
|
| T |
5398843 |
attgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
5398892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 5399100 - 5399156
Alignment:
| Q |
235 |
cagattgaaataaaattcaca--tgtgttttttgtgtctcagactatcacaatacgt |
289 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||| || |||||||||||| |
|
|
| T |
5399100 |
cagattgaaataaaattcacatgtgtgtttcttgtgtctcggagcatcacaatacgt |
5399156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University