View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_low_17 (Length: 286)
Name: NF15758_low_17
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 31 - 268
Target Start/End: Complemental strand, 991962 - 991732
Alignment:
| Q |
31 |
tttgtcggtgtcttaccatagcgcttgtgaccagcgtgcgattagtctcaatagaaaaatcattagggtgttaaattaataaaggtctgctacggcgatt |
130 |
Q |
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| T |
991962 |
tttgtcggtgtcttaccatagcgcttgtgaccatcgtgcgattagtctcaatagaacaatcattagggtgttaaatcaa----ggtctgctacggcgatt |
991867 |
T |
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| Q |
131 |
ttagtcataacatggcggtttttgttgttgtcgaaaccacaatgcaactggaattgagactacatggcaaccgacaattatgcacaaacagaactcga-t |
229 |
Q |
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| T |
991866 |
t-agtcataacatgacggtttttgttgt---cgaaaccacaatgcaactggaattgagactacatggcaaccgacaactatgcacaaacagaactcgatt |
991771 |
T |
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| Q |
230 |
catatatgacaattaattctctccatcaatgccattaat |
268 |
Q |
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| T |
991770 |
catatatgacaattaattctctccatcaatgccattaat |
991732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 1012257 - 1012143
Alignment:
| Q |
108 |
aataaaggtctgctacggcgattttagtcataacatggcggtttttgttgttgtcgaaaccacaatgcaactggaattgagactacatggcaaccgacaa |
207 |
Q |
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| T |
1012257 |
aataaaggtctgctacggctatttgagtcataaaatgatggtttt----gttgacgaaaccacaatgcaactgcaattgaggctacatcataaccgacaa |
1012162 |
T |
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| Q |
208 |
ttatgcacaaacagaactc |
226 |
Q |
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| T |
1012161 |
ttatgcacaaacataactc |
1012143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 226
Target Start/End: Complemental strand, 1029525 - 1029454
Alignment:
| Q |
155 |
ttgttgtcgaaaccacaatgcaactggaattgagactacatggcaaccgacaattatgcacaaacagaactc |
226 |
Q |
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| T |
1029525 |
ttgttgacgaaaccacaatgcaactggaattgaggctacatcgcaaccgacaattacacacaaacataactc |
1029454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 220
Target Start/End: Complemental strand, 1029454 - 1029404
Alignment:
| Q |
170 |
caatgcaactggaattgagactacatggcaaccgacaattatgcacaaaca |
220 |
Q |
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| T |
1029454 |
caatgcaactggaattgagactacatcgcaaccgataattacgcacaaaca |
1029404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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