View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15758_low_20 (Length: 255)

Name: NF15758_low_20
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15758_low_20
NF15758_low_20
[»] chr1 (28 HSPs)
chr1 (1-243)||(5389413-5389655)
chr1 (1-243)||(41920300-41920541)
chr1 (1-243)||(31585752-31585994)
chr1 (1-243)||(46692811-46693053)
chr1 (8-243)||(30685896-30686131)
chr1 (4-243)||(24449922-24450161)
chr1 (1-233)||(20113523-20113755)
chr1 (1-235)||(24684478-24684710)
chr1 (17-232)||(7857518-7857731)
chr1 (6-235)||(24658783-24659010)
chr1 (126-243)||(5459133-5459250)
chr1 (44-235)||(46814467-46814656)
chr1 (26-235)||(32864561-32864771)
chr1 (117-229)||(27031846-27031958)
chr1 (60-214)||(9313310-9313463)
chr1 (17-214)||(38544759-38544954)
chr1 (60-209)||(34774779-34774925)
chr1 (139-223)||(17033571-17033655)
chr1 (173-235)||(27102210-27102272)
chr1 (173-233)||(19598655-19598715)
chr1 (26-77)||(10785489-10785540)
chr1 (116-208)||(4651742-4651834)
chr1 (17-74)||(50589365-50589422)
chr1 (176-215)||(27905434-27905473)
chr1 (26-88)||(6583337-6583399)
chr1 (173-223)||(15840924-15840974)
chr1 (153-214)||(6583237-6583298)
chr1 (173-209)||(30655579-30655615)
[»] chr7 (31 HSPs)
chr7 (1-243)||(38306108-38306350)
chr7 (1-240)||(47325880-47326119)
chr7 (1-235)||(3419656-3419890)
chr7 (4-243)||(5860280-5860519)
chr7 (1-243)||(10244031-10244271)
chr7 (19-243)||(37794865-37795078)
chr7 (1-235)||(3866964-3867197)
chr7 (1-234)||(33434957-33435189)
chr7 (1-235)||(25160662-25160896)
chr7 (65-231)||(41089752-41089918)
chr7 (29-235)||(35745827-35746031)
chr7 (6-235)||(34389815-34390043)
chr7 (17-223)||(6716748-6716953)
chr7 (122-235)||(6584877-6584990)
chr7 (26-235)||(8745026-8745234)
chr7 (176-243)||(44353556-44353623)
chr7 (26-223)||(42533264-42533460)
chr7 (26-191)||(44755500-44755663)
chr7 (27-223)||(16954527-16954722)
chr7 (60-223)||(1320701-1320863)
chr7 (164-223)||(13311849-13311908)
chr7 (131-221)||(3478329-3478419)
chr7 (106-223)||(24324810-24324927)
chr7 (173-232)||(12480905-12480965)
chr7 (107-223)||(16828948-16829064)
chr7 (116-208)||(38485518-38485610)
chr7 (154-212)||(9428128-9428186)
chr7 (26-223)||(11379139-11379335)
chr7 (173-211)||(9349768-9349806)
chr7 (165-223)||(47457034-47457092)
chr7 (175-235)||(46133277-46133338)
[»] chr8 (22 HSPs)
chr8 (2-243)||(24995387-24995628)
chr8 (1-243)||(9519346-9519588)
chr8 (1-243)||(34388997-34389239)
chr8 (1-243)||(32066287-32066529)
chr8 (1-243)||(37986850-37987092)
chr8 (1-235)||(36630684-36630918)
chr8 (102-243)||(31207354-31207494)
chr8 (1-106)||(31210319-31210425)
chr8 (26-223)||(10248565-10248761)
chr8 (6-235)||(15821379-15821606)
chr8 (133-243)||(16457453-16457562)
chr8 (26-232)||(17657005-17657209)
chr8 (131-243)||(12898266-12898378)
chr8 (176-243)||(20138448-20138515)
chr8 (161-243)||(41893393-41893474)
chr8 (116-235)||(30236128-30236247)
chr8 (173-235)||(15906705-15906767)
chr8 (173-235)||(32945703-32945765)
chr8 (173-203)||(33967345-33967375)
chr8 (165-203)||(40531243-40531281)
chr8 (179-223)||(3679471-3679515)
chr8 (173-209)||(12883497-12883533)
[»] chr2 (29 HSPs)
chr2 (1-243)||(39338857-39339099)
chr2 (1-243)||(10523944-10524190)
chr2 (6-235)||(7874145-7874372)
chr2 (6-198)||(17105264-17105456)
chr2 (132-231)||(387151-387250)
chr2 (117-235)||(14405162-14405279)
chr2 (44-233)||(1269373-1269562)
chr2 (24-213)||(14106546-14106734)
chr2 (165-232)||(13337285-13337352)
chr2 (26-213)||(37770663-37770849)
chr2 (173-235)||(4471942-4472004)
chr2 (173-233)||(22885135-22885195)
chr2 (173-235)||(16960001-16960063)
chr2 (173-235)||(34230220-34230282)
chr2 (176-235)||(7695985-7696044)
chr2 (173-235)||(2062908-2062970)
chr2 (173-235)||(10173578-10173640)
chr2 (173-235)||(15126410-15126472)
chr2 (26-200)||(41086823-41086994)
chr2 (173-235)||(5254275-5254337)
chr2 (175-232)||(16952386-16952443)
chr2 (175-232)||(17023051-17023108)
chr2 (175-232)||(17060357-17060414)
chr2 (175-232)||(17079190-17079247)
chr2 (115-208)||(27739936-27740029)
chr2 (173-214)||(33788653-33788694)
chr2 (173-222)||(42048229-42048278)
chr2 (153-213)||(23650384-23650444)
chr2 (175-223)||(37831024-37831072)
[»] chr5 (18 HSPs)
chr5 (1-243)||(698208-698450)
chr5 (1-235)||(18593090-18593324)
chr5 (2-235)||(34377946-34378179)
chr5 (37-235)||(29087364-29087562)
chr5 (26-235)||(13954234-13954441)
chr5 (60-214)||(7392052-7392205)
chr5 (32-232)||(8297347-8297546)
chr5 (26-223)||(7195251-7195447)
chr5 (66-214)||(33258903-33259050)
chr5 (60-235)||(14302430-14302604)
chr5 (184-235)||(22675324-22675375)
chr5 (82-213)||(25991936-25992066)
chr5 (116-211)||(31721639-31721734)
chr5 (173-219)||(21402853-21402899)
chr5 (173-235)||(27713088-27713150)
chr5 (200-233)||(7162319-7162352)
chr5 (173-214)||(39184208-39184249)
chr5 (176-232)||(26045967-26046023)
[»] chr4 (30 HSPs)
chr4 (1-243)||(30964288-30964530)
chr4 (1-235)||(8254874-8255108)
chr4 (1-235)||(8268292-8268526)
chr4 (3-243)||(4305574-4305814)
chr4 (62-243)||(30167556-30167736)
chr4 (26-235)||(25753045-25753253)
chr4 (43-233)||(53823423-53823612)
chr4 (24-235)||(31050662-31050871)
chr4 (41-223)||(19672989-19673169)
chr4 (26-223)||(22811172-22811367)
chr4 (43-223)||(19815236-19815415)
chr4 (60-206)||(39421042-39421187)
chr4 (60-235)||(2825691-2825864)
chr4 (173-235)||(38929846-38929908)
chr4 (173-225)||(36962626-36962677)
chr4 (162-229)||(38637238-38637305)
chr4 (173-224)||(39041285-39041336)
chr4 (139-235)||(46698784-46698881)
chr4 (174-223)||(2792286-2792335)
chr4 (162-235)||(41117967-41118040)
chr4 (176-223)||(21387216-21387263)
chr4 (184-235)||(28966897-28966948)
chr4 (176-235)||(35800511-35800570)
chr4 (173-235)||(16501750-16501812)
chr4 (173-203)||(17416541-17416571)
chr4 (182-232)||(35341341-35341391)
chr4 (173-219)||(40813797-40813843)
chr4 (173-202)||(37707388-37707417)
chr4 (183-235)||(12296204-12296256)
chr4 (153-213)||(49747526-49747586)
[»] chr6 (14 HSPs)
chr6 (1-243)||(3117339-3117582)
chr6 (34-232)||(16510304-16510502)
chr6 (26-235)||(20701803-20702011)
chr6 (24-147)||(15132611-15132732)
chr6 (15-232)||(32935342-32935558)
chr6 (26-195)||(3880623-3880791)
chr6 (173-212)||(26216042-26216081)
chr6 (173-220)||(34105432-34105479)
chr6 (173-212)||(12794133-12794173)
chr6 (155-214)||(9224042-9224101)
chr6 (176-223)||(13423488-13423535)
chr6 (173-212)||(26534742-26534781)
chr6 (178-223)||(33968625-33968670)
chr6 (179-223)||(32316393-32316437)
[»] chr3 (29 HSPs)
chr3 (1-235)||(20611630-20611864)
chr3 (4-243)||(2392498-2392737)
chr3 (1-235)||(19176350-19176583)
chr3 (4-233)||(2394255-2394484)
chr3 (1-243)||(34475746-34475988)
chr3 (4-243)||(45163699-45163944)
chr3 (4-167)||(47235566-47235729)
chr3 (17-231)||(23328354-23328564)
chr3 (162-243)||(17550965-17551046)
chr3 (26-223)||(25647557-25647753)
chr3 (6-235)||(40023572-40023799)
chr3 (115-235)||(9584053-9584173)
chr3 (151-231)||(43012372-43012452)
chr3 (60-223)||(14193846-14194009)
chr3 (60-235)||(37123289-37123463)
chr3 (134-235)||(45398776-45398877)
chr3 (173-235)||(1652886-1652948)
chr3 (173-235)||(47945725-47945787)
chr3 (26-214)||(14755286-14755471)
chr3 (150-243)||(31482880-31482973)
chr3 (185-242)||(47235729-47235786)
chr3 (177-235)||(33143948-33144007)
chr3 (173-235)||(39021276-39021338)
chr3 (175-223)||(30127283-30127332)
chr3 (164-223)||(5556580-5556639)
chr3 (140-223)||(14879421-14879504)
chr3 (173-223)||(823447-823497)
chr3 (37-147)||(4464024-4464132)
chr3 (174-222)||(31424256-31424304)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-235)||(35772-36006)
[»] scaffold0200 (1 HSPs)
scaffold0200 (44-235)||(19273-19464)
[»] scaffold0050 (1 HSPs)
scaffold0050 (26-220)||(36580-36773)
[»] scaffold0119 (1 HSPs)
scaffold0119 (44-233)||(42140-42329)
[»] scaffold1613 (1 HSPs)
scaffold1613 (17-214)||(1038-1233)
[»] scaffold0063 (1 HSPs)
scaffold0063 (26-223)||(58000-58196)
[»] scaffold0620 (1 HSPs)
scaffold0620 (173-220)||(3849-3896)
[»] scaffold0343 (1 HSPs)
scaffold0343 (200-235)||(5751-5786)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 5389655 - 5389413
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5389655 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctgcaatctttgtt 5389556  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5389555 tgacttgatttgatttttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgg 5389456  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||| ||||||||||| |||||||    
T  5389455 gagtcagttctttgactcaagtttgtttttgggctttgtgttg 5389413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41920300 - 41920541
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  41920300 catgccatgtctttcgtcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 41920399  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||| |    
T  41920400 tgacttgatttggtttttctctggtgtact-ggggcgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgg 41920498  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||||| ||||||||| |||||||    
T  41920499 gagtcagttctttgactcaagttggattttgggctttgtgttg 41920541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 31585994 - 31585752
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  31585994 catgccatgtctttcgtcttacatagtgtttgctgatttttggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 31585895  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| |    
T  31585894 tgacttgatttggtttttctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgg 31585795  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  31585794 gagtcagttctttgactcaagttggtttttgggctttgtgttg 31585752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 46693053 - 46692811
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||  |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||  ||||||| | |||||||||||    
T  46693053 catgccatgtcttttgtcttacatattgtgtgctagttttcggtgggccgattcatttggcttcgagatcgggagtcgaggtctagttgcaatctttgtt 46692954  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||  |||||||||  |||||||||||||||||||||||||| |    
T  46692953 tgacttgatttgatttttctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgg 46692854  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||| ||||||||| |||||||||||||||||||| |||||||    
T  46692853 gagttagttctttggctcaagttggtttttgggctttgtgttg 46692811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 243
Target Start/End: Complemental strand, 30686131 - 30685896
Alignment:
Q  8 tgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttg 107  Q
    |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| || ||||| ||||||||||||    
T  30686131 tgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctaactgcaatccttgtttgacttg 30686032  T
Q  108 atttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcag 207  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| |||||| ||||||||    
T  30686031 atttggtttttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcag 30685932  T
Q  208 ttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||||||||||||| ||||||||| |||||||    
T  30685931 ttctttgactcaagttggcttttgggctttgtgttg 30685896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 24450161 - 24449922
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| ||||||||||| |||| ||||||||  ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  24450161 gccatgtctttcgtcttacatattatgtgttggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttga 24450062  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    |||| |||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||||||| |||||| | ||    
T  24450061 cttggtttggtttttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaag 24449962  T
Q  204 tcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||| || ||||||||||||||| | |||||||    
T  24449961 tcagttctttgtcttaagttggtttttgggatttgtgttg 24449922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 20113755 - 20113523
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  20113755 catgccatgtctttcatcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 20113656  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
     ||  || |||| |||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||  ||| |||||| ||||||||| ||||| |    
T  20113655 agatatggtttggtttttctcgggtgtaccgggggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgattcaagatcgg 20113556  T
Q  201 gagtcagttctttgactcaagttggtttttggg 233  Q
    || |||||||||| ||| |||||||||||||||    
T  20113555 gaatcagttctttaacttaagttggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 24684710 - 24684478
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  24684710 catgccatgtctttcgtcttacatattgtgtgctggttttcggtgg-ccaattcatttggcttcgagatcgggagtcggggtctagctgtaatctttgtt 24684612  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||  |||||||| | ||| ||||||  ||||||||||||||| |||||||||| |    
T  24684611 tgacttgatttggtttt-ctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcgg 24684513  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
      |||||||||||||||| ||||||||||||||||    
T  24684512 atgtcagttctttgactctagttggtttttgggct 24684478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 7857518 - 7857731
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 116  Q
    ||||||||||||||||||||||| |||||||||| ||  ||| |||||||||||||||||  | |||||| | |||| | ||||||||||||| || ||     
T  7857518 tcttacatattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagttggtgtctagttgcaat-tatgtttgacttgatatg-ttg 7857615  T
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||  |||||  |    
T  7857616 ttctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcaactcttttgc 7857715  T
Q  217 tcaagttggtttttgg 232  Q
    | ||||||||||||||    
T  7857716 tgaagttggtttttgg 7857731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 24658783 - 24659010
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || |||||||| |||||||||||  | | |||||||||||  ||| ||||| |||||||||||  | |||||||| ||||| | ||||||||    
T  24658783 catgtctatcgtcttacattttgtgtgctggagtccggtgggccggttatttttgcttcaagatcgggagttggtgtctagctgcaatcat-gtttgact 24658881  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| || | || ||||||||||  |||||| |||||||||| ||| ||||||| ||| ||||||  ||||| |||||||||||||||||||| ||||||    
T  24658882 tgatatggtgtt-ctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtc 24658980  T
Q  206 agttctttgactcaagttggtttttgggct 235  Q
    || |||||| || |||||||||||||||||    
T  24658981 agctctttggctgaagttggtttttgggct 24659010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 243
Target Start/End: Original strand, 5459133 - 5459250
Alignment:
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||| || ||||| ||||||||     
T  5459133 gtaccgggggcgaggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttga 5459232  T
Q  226 tttttgggctctgtgttg 243  Q
    |||||||||| |||||||    
T  5459233 tttttgggctttgtgttg 5459250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 235
Target Start/End: Complemental strand, 46814656 - 46814467
Alignment:
Q  44 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 143  Q
    ||||||||||  ||| | |||||||||| ||||  | |||||| | ||||| | |||||||||||| || | || ||||||||||| |||||| ||||||    
T  46814656 tgggccggttatttttgattcgagatcgagagttggtgtctagttgcaatcct-gtttgacttgatatggtgtt-ctctggtgtaccgggggcaaggggt 46814559  T
Q  144 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||| ||||    
T  46814558 gccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttttggct 46814467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 32864771 - 32864561
Alignment:
Q  26 ttgtgtgctggttttcag-tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctgg 124  Q
    ||||||||| |||||| | ||||||||||  ||| ||||||| ||| |||||| | ||||||||||||||||  |||| ||| ||||| | ||| ||||     
T  32864771 ttgtgtgctagttttccggtgggccggttacttttgcttcgaaatcaggagtcggtgtctagctacaatcttgttttggctttatttggtgtttatctga 32864672  T
Q  125 tgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttg 224  Q
    | ||||| ||| |||||||||||  |  ||||||| ||| || |||  ||||| ||||||||| |||||||||| | |||| |||||||||||||||||     
T  32864671 tctactgagggtgaggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagttt 32864572  T
Q  225 gtttttgggct 235  Q
    | |||||||||    
T  32864571 ggttttgggct 32864561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 27031958 - 27031846
Alignment:
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    ||||||||||||| |||||  |||||||||| ||| ||||||| ||| |||||   ||||||||||||||||||||||||||  ||||||| |||||| |    
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  217 tcaagttggtttt 229  Q
    |||||||||||||    
T  27031858 tcaagttggtttt 27031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 9313463 - 9313310
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||  | |||||||| |||| |||||||| | ||||||| | ||||||| |||||  ||| | |||||||||||  || |||||||    
T  9313463 gcttcgagatcgggagttggtgtctagctgcaat-tttgtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatttggt 9313365  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
     ||| |||||   |||| ||||||||||||||||||||| |||||||||||||||    
T  9313364 cctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttg 9313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 38544954 - 38544759
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgattt-gatt 115  Q
    |||||||||||||||||||| ||  ||||||||| ||  ||| |||||||||| ||||||  | |||||||| ||||||| |||||| ||||||| | |     
T  38544954 tcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatctt-gtttga-ttgattttggtg 38544857  T
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||||||| ||||||   ||||||| |||  || |||||||  |  ||||||  ||||||||| |||||||||||||||| |||||||||||||||    
T  38544856 tttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 38544759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 34774779 - 34774925
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    ||||||||| |||||||| | ||||| |||||||||| ||||| ||||||||||| ||||||| || ||| ||||| ||| |||||||  || |||||||    
T  34774779 gcttcgagaacgggagtcggtgtctaactacaatctt-gtttggcttgatttgatgtttctctagtatac-gggggtgagtggtgcccttctgatttggt 34774876  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagtt 209  Q
     |||  |||||  || |||||||||||||| |||||||| ||||||||||    
T  34774877 cctaacgtctggtggaccgatcacttttga-tcgagatcgggagtcagtt 34774925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 17033571 - 17033655
Alignment:
Q  139 ggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||  || ||||||| ||||||||||  ||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  17033571 ggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagtt 17033655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 27102210 - 27102272
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||| | |||||||||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggct 27102272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 19598655 - 19598715
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  19598655 gggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtttgattttggg 19598715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 10785540 - 10785489
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtc 77  Q
    |||||||||||||| | ||||||||||| |||| ||||||||||||||||||    
T  10785540 ttgtgtgctggtttccggtgggccggttaattttgcttcgagatcgggagtc 10785489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 4651742 - 4651834
Alignment:
Q  116 tttctctggtgtactgggggcgaggggtgcccagct-aatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 208  Q
    |||||||||||||| |||||  ||||||||||  || |||||| | | | ||||||  |||||||||||||||||||||||||| |||||||||    
T  4651742 tttctctggtgtaccgggggtaaggggtgcccttctgaatttgttccga-agtctggggggccgatcacttttgattcgagatcgggagtcagt 4651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 50589422 - 50589365
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcggga 74  Q
    |||||||||||||||||||| ||   ||||||||||| |||| |||||||||||||||    
T  50589422 tcttacatattgtgtgctggattctggtgggccggttaattttgcttcgagatcggga 50589365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 27905434 - 27905473
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttga 215  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  27905434 ccgatcacttttgattcgagatcagaagttagttctttga 27905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 6583399 - 6583337
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagct 88  Q
    ||||||| ||||| || |||||||||||  ||| |||||||||||||||||| | ||||||||    
T  6583399 ttgtgtgttggttgtcggtgggccggttacttttgcttcgagatcgggagtcggtgtctagct 6583337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 15840974 - 15840924
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||| ||||||||||||||||||||| ||||||||||  |||| |||||||    
T  15840974 gggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtt 15840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 6583298 - 6583237
Alignment:
Q  153 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||| ||| ||||||  || ||||||||||||||||||||||| | ||||| |||||||    
T  6583298 atttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttg 6583237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 30655579 - 30655615
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagtt 209  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  30655579 gggccgatcgcttttgattcgagatcgggagtcagtt 30655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 38306108 - 38306350
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||    
T  38306108 catgccatgtctttcatcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagaacgggagtcggggtctagctgcaatctttgtt 38306207  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||  |    
T  38306208 tgacttgatttggtttttctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgg 38306307  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  38306308 gagtcagttctttgactcaagttggtttttgggctttgtgttg 38306350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 47326119 - 47325880
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  47326119 catgccatgtctttcttcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcggggtctagcagcaatctttgtt 47326020  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    | |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||  ||||||||| ||||||||| |||||| |    
T  47326019 taacttgatttggtttttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgg 47325920  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtg 240  Q
    ||||||| ||||||||||||||||||||||||||| ||||    
T  47325919 gagtcagctctttgactcaagttggtttttgggctttgtg 47325880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3419890 - 3419656
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  3419890 catgccatgtctttcgtcttacatattgtgtgctggttttcggcgagccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 3419791  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||| | ||||||||||||| ||| ||  |||| ||||||||||||||||||||| |    
T  3419790 tgacttgatttggtttttctctggtataccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgg 3419691  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||| |||||||||||||||||||||||||||    
T  3419690 gagtcagctctttgactcaagttggtttttgggct 3419656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 5860519 - 5860280
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||     
T  5860519 gccatgtctttcgtcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcgaggtctatctgcaatctttgtttgg 5860420  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    ||  ||||| |||||||||  ||||| ||||||||||||||||| |||||||||||||||||||| |  ||||| ||| |||||||||||||||| ||||    
T  5860419 ctgaatttggtttttctctactgtaccgggggcgaggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggag 5860320  T
Q  204 tcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||| ||||||||| |||||||||||||||||| |||||||    
T  5860319 tcaattctttgacgcaagttggtttttgggctttgtgttg 5860280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 10244031 - 10244271
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||||| |||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| || ||||| | |||||||||||    
T  10244031 catgccatgt-tttcgtcttacatattgtgtgctggttttcggttggctggttcatttggcttcgagatcgggagtcgggatctagttgcaatctttgtt 10244129  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||| | |||||| |||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||  |||||||||||||||||||||||||| |    
T  10244130 tga-tagatttggtttttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgg 10244228  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||| |||||||| || |||||||    
T  10244229 gagtcagttctttgactcaagttagtttttggcctttgtgttg 10244271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 37794865 - 37795078
Alignment:
Q  19 ttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattttt 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||            
T  37794865 ttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagttggggtctagctgcaatctttgtttgacttgatt-------- 37794956  T
Q  119 ctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactc 218  Q
       |||||||| ||||||||||||||||| |||||||||||| |||||| ||  |||||| ||| ||||||||||||||| |||||||||||||||| ||    
T  37794957 ---tggtgtaccgggggcgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtc 37795053  T
Q  219 aagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||| |||||||    
T  37795054 aagttggtttttgggctttgtgttg 37795078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 3866964 - 3867197
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||| ||||||| ||||||||||||||| ||||||| | ||||| || ||  ||| |||||||||||| ||||| ||||||||||||||||||||||    
T  3866964 catgccacgtctttcgtcttacatattgtgtcctggttt-cggtgggtcgattacttttgcttcgagatcgagagtcggggtctagctacaatctttgtt 3867062  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||||| || |||||||||||||||| | |||||| ||||| || ||||||||||||||| | | ||  |||| ||||||||||||||||||| | |    
T  3867063 tgacttgatatggtttttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgagaccgg 3867162  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||||||||||||||||||||||||||||    
T  3867163 gagtcagttctttgactcaagttggtttttgggct 3867197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 33434957 - 33435189
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||| ||| | |||||||||||||| |||||| | |||||||| ||  ||| ||||||||||||| ||||||||||||| |  ||||||||||    
T  33434957 catgccatgtcattcgtattacatattgtgtgttggtttccggtgggccgattacttttgcttcgagatcggtagtccgggtctagttgtaatctttgtt 33435056  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |  ||||||||| |||| ||||||||||| ||||||||||||||||| | ||||||||||||| ||||||  | | |||||||||||||||||||||| |    
T  33435057 tagcttgatttggtttt-ctctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtgagacgatcacttttgattcgagatcgg 33435155  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||| |||||||| |||| |||||    
T  33435156 gagtcagttctttgtctcaagttcgtttgtgggc 33435189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 25160662 - 25160896
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||  ||||||||||||||| ||||||||| |||||  | |||||||||||| | ||||||||||| |||||||| | | || ||||||    
T  25160662 catgccatgtcttttgtcttacatattgtgtactggttttcggtgggatgattcatttggctttgggatcgggagtcggggtctagttgctatttttgtt 25160761  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||| |||| |||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||  || ||||| ||||||||||||||||| |    
T  25160762 tgacttggtttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagatcgg 25160861  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
     |||||  ||||  | | |||||||||||||||||    
T  25160862 aagtcaaatcttgaaattaagttggtttttgggct 25160896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 231
Target Start/End: Complemental strand, 41089918 - 41089752
Alignment:
Q  65 gagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactat 164  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||| | |||||||||||||||     
T  41089918 gagatcgagagttggggtctagctacaatctttgtttgacttgatttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaa 41089819  T
Q  165 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 231  Q
    ||||||  || ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  41089818 agtctggtggaccgatcacttttgattcgagattgggagtcagctctttgactcaagttggtttttg 41089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 235
Target Start/End: Complemental strand, 35746031 - 35745827
Alignment:
Q  29 tgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgta 128  Q
    |||| |||||||| |||| ||||||  ||| ||||||||||||| |||  | | |||||  ||||||| |||||||||||| || | || ||||| ||||    
T  35746031 tgtgttggttttcggtggaccggttacttttgcttcgagatcggaagttggtgactagcagcaatctt-gtttgacttgatatggtgtt-ctctgatgta 35745934  T
Q  129 ctgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttt 228  Q
    | |||||||||||||||||  ||||||| || ||| ||||||| |||| ||||||||||||||||||||| | |||||  |||||| |||||||||||||    
T  35745933 ccgggggcgaggggtgccctactaattttgttctaaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggttt 35745834  T
Q  229 ttgggct 235  Q
    |||||||    
T  35745833 ttgggct 35745827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 34389815 - 34390043
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || || |||||||||||||||||| |    |||||| |||  ||| ||||||||||| | |||  | |||||| | ||||| |  |||||||    
T  34389815 catgtctatcgtcgtacatattgtgtgctggtgtctgatgggccagttatttttgcttcgagatcagaagttggtgtctagttgcaatcatgttttgact 34389914  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| ||  | ||||||||||||||||||| |||| |||||| ||| |||||||  || ||||||  |||||||||||||||||||||||||| ||||||    
T  34389915 tgatatg-gtgttctctggtgtactgggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtc 34390013  T
Q  206 agttctttgactcaagttggtttttgggct 235  Q
    || |||||| || |||||||||||||||||    
T  34390014 agctctttggcttaagttggtttttgggct 34390043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 6716953 - 6716748
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 116  Q
    |||||| | ||| |||||||||||| ||||||| |||  |||  ||| ||||||||||||| | |||||||| ||||| || |||| ||||||||||| |    
T  6716953 tcttactttttgcgtgctggttttcggtgggccagttacttttactttgagatcgggagtcggtgtctagctgcaatc-ttatttggcttgatttgatgt 6716855  T
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    ||||||||||||| | | | |||||||||||  || ||||  |  || ||||||   ||||||||||||||||||||||||| ||||||||||||||| |    
T  6716854 ttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagttctttggc 6716755  T
Q  217 tcaagtt 223  Q
    |||||||    
T  6716754 tcaagtt 6716748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 6584877 - 6584990
Alignment:
Q  122 tggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaag 221  Q
    |||||||| || |||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| |||||| || |||    
T  6584877 tggtgtaccggaggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaag 6584976  T
Q  222 ttggtttttgggct 235  Q
    ||||||||||||||    
T  6584977 ttggtttttgggct 6584990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 8745026 - 8745234
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||||||||| |||||||||||  ||| ||||||||||||| || | | |||||||| |||| || |||||   |||| || | ||||||||||    
T  8745026 ttgtgtgctggttttcggtgggccggttacttttgcttcgagatcggaaggcggtgtctagctgcaatgtt-gtttggtgtgatctggtgtttctctggt 8745124  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    | || | ||| |||||||| ||  || ||||||| ||| | ||||  |||||||||||||||||||||||||| ||| ||||||| |||  ||||||| |    
T  8745125 gcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttcgttggatcaagtttg 8745224  T
Q  226 tttttgggct 235  Q
     |||||||||    
T  8745225 gttttgggct 8745234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Complemental strand, 44353623 - 44353556
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||| |||||||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtgttg 44353556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 42533460 - 42533264
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||||| | |  ||||||||||  ||| |||||||||||||||||| | ||| |||| || ||||  |||| |  ||| || | ||||||||||    
T  42533460 ttgtgtgctggtctccgatgggccggttacttttgcttcgagatcgggagtctgtgtccagctgcattctta-tttggcgcgatgtggtgtttctctggt 42533362  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    | |  ||||| |||||||||||  || ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||| | ||||| || |||||    
T  42533361 gcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggcttaagtt 42533264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 44755500 - 44755663
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||||||  | |||||||  || |||| |||| ||| ||||||||| | |||||||| | || |||||||||| ||||||| | ||||||||||    
T  44755500 ttgtgtgctggttagcggtgggcccattaattttgctttgaggtcgggagtcggtgtctagctgctat-tttgtttgacgtgatttggtgtttctctggt 44755598  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgatt 191  Q
    |||| | ||  |||||||||||  || ||||||| ||| ||||||  |||||||||||||||||||    
T  44755599 gtaccgtggt-gaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 16954527 - 16954722
Alignment:
Q  27 tgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtg 126  Q
    ||||||||||||| |  ||||||| ||  ||| ||||| |||||| ||||  | |||||||| ||||||| ||| | |  |||||| | |||||||||||    
T  16954527 tgtgtgctggtttccgatgggccgattacttttgcttccagatcgagagttggtgtctagctgcaatcttggttgg-cgcgatttggtctttctctggtg 16954625  T
Q  127 tactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||   | || |||||||||||  || ||||||| ||| ||||||   | ||||||||||||| |||||||||   ||||||||||||||||||||||    
T  16954626 tatcagaggtgaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 1320701 - 1320863
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||  | ||||||||  ||| |||||||| |   ||||| | |||||||| ||||  ||||| |||||||||||   | |||||||    
T  1320701 gcttcgagatcgggagttggtgtctagctgtaat-tttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatttggt 1320799  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
      || ||||||  |||||||||||||||||||| | ||| | ||||||||||||| ||||||||    
T  1320800 cataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagtt 1320863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 13311849 - 13311908
Alignment:
Q  164 tagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  13311849 tagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 3478329 - 3478419
Alignment:
Q  131 gggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaag 221  Q
    ||||| |||||||||||  ||  |||||| ||| ||| ||  |||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  3478329 gggggtgaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaag 3478419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 24324927 - 24324810
Alignment:
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    ||||||| | ||||| |||||||| ||||   ||||||||||  || |||||||  || ||| ||  |||||||||| ||||||||||||||| ||||||    
T  24324927 tgatttggtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtc 24324828  T
Q  206 agttctttgactcaagtt 223  Q
    | ||||||| ||||||||    
T  24324827 aattctttggctcaagtt 24324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 12480905 - 12480965
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgg 232  Q
    ||||||||| |||||||||||||||| |||||||||||||||  ||||| |||||||||||    
T  12480905 gggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttgg 12480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 16829064 - 16828948
Alignment:
Q  107 gatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtca 206  Q
    |||||| | ||||||| |||||   |||| |||||||||||  || ||||||| ||| ||||||   ||| ||||||||||| |||||||||   |||||    
T  16829064 gatttggtgtttctctagtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtca 16828965  T
Q  207 gttctttgactcaagtt 223  Q
    |||||||||||||||||    
T  16828964 gttctttgactcaagtt 16828948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 38485518 - 38485610
Alignment:
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 208  Q
    ||||||||||| ||||||||  ||||||||||  || | || || ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  38485518 tttctctggtggactgggggtaaggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 38485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 9428186 - 9428128
Alignment:
Q  154 tttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctt 212  Q
    |||||| || |||||||  | |||||||||||||||||||||||||| |||||||||||    
T  9428186 tttggtcctgtagtctggtgagccgatcacttttgattcgagatcagaagtcagttctt 9428128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 11379335 - 11379139
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||||||| ||  |||||| |||||  ||| | ||| |||||||||||  | |||||||||||||||| ||||| ||   |  | | ||||||||||    
T  11379335 ttgtgtgctggattctagtgggtcggttatttttgattcaagatcgggagttggtgtctagctacaatctt-gtttggctgactacggtgtttctctggt 11379237  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    | || | |||   |||||||||  ||||||||||  | |||||||  | ||||||| |||||||||||||||| ||||||||| |||||  |||||||    
T  11379236 ggaccgagggtttggggtgcccttctaatttggtcatgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagtt 11379139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 9349768 - 9349806
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttct 211  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  9349768 gggccgatcacttttgattcgagatcgggagtcaattct 9349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 47457092 - 47457034
Alignment:
Q  165 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||| || |||||| ||||||||| |||||  ||||||||||||||| ||||||||    
T  47457092 agtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggctcaagtt 47457034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 46133338 - 46133277
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgggct 235  Q
    ||||||| ||||||||| |||||| |||||||||||| ||  ||||| ||||||||||||||    
T  46133338 gccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggct 46133277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 243
Target Start/End: Complemental strand, 24995628 - 24995387
Alignment:
Q  2 atgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgttt 101  Q
    |||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  24995628 atgctatgtttttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgttt 24995529  T
Q  102 gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagg 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||  |||||||||||||||||||||||||| ||    
T  24995528 gacttgatttggtttttctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcggg 24995429  T
Q  202 agtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  24995428 agtcagttctttgactcaagttggtttttgggctttgtgttg 24995387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 9519346 - 9519588
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  9519346 catgccatttctttcgtcttacatattgtgtgctggttttcagtaggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 9519445  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||| |    
T  9519446 tgacttgatttggtttttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgg 9519545  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  9519546 gagtcagttctttgactcaagttggtttttgggctttgtgttg 9519588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34389239 - 34388997
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  34389239 catgccatgtctttcgtcttacatattgtgtgctggttttcgataggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtt 34389140  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||     
T  34389139 tgacttgatttggtttttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaa 34389040  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  34389039 gagtcagttctttgactcaagttggtttttgggctttgtgttg 34388997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 32066529 - 32066287
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||||| | |||||||||||    
T  32066529 catgccatgtctttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggctttgagatcgggattcggggtctagttgcaatctttgtt 32066430  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||| ||| |    
T  32066429 tgacttgatttggtttttctctagtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgg 32066330  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||| |||||||||| |||||||||||||||| |||||||    
T  32066329 gagtcagctctttgactccagttggtttttgggctttgtgttg 32066287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 37987092 - 37986850
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| | || ||||| ||    
T  37987092 catgccatgtctttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcggtagtcggggtctagttgcattctttatt 37986993  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||  ||||| |||| ||||||||||||||| |    
T  37986992 tgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgg 37986893  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  37986892 gagtcagttctttgactcaagttggtttttgtgctttgtgttg 37986850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 36630684 - 36630918
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |  ||||||||| |||||||||||    
T  36630684 catgccatgtctttcgtcttacatattgtgtgttggttttcggtaggccggttcatttggcttcgagatcgggagacgaggtctagctgcaatctttgtt 36630783  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||| ||| ||||||  ||||||||||||||| |||||||||| |    
T  36630784 tgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgg 36630883  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
    | |||||||||||||||| |||| |||||||||||    
T  36630884 gtgtcagttctttgactctagtttgtttttgggct 36630918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 102 - 243
Target Start/End: Complemental strand, 31207494 - 31207354
Alignment:
Q  102 gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagg 201  Q
    ||||||||||| ||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| ||    
T  31207494 gacttgatttggtttttctctggtgtaccaggggcgaggg-tgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcggg 31207396  T
Q  202 agtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||||||||||||||||||| ||||||| | |||||||    
T  31207395 agtcagttctttgactcaagttggattttgggatttgtgttg 31207354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 31210425 - 31210319
Alignment:
Q  1 catgccatgtctttcatcttacatatt-gtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgt 99  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  31210425 catgccatgtctttcgtcttacatatttgtgcgctggttttcggtgggccggttcatttggcttcaagatcgggagtcagggtctagctgcaatctttgt 31210326  T
Q  100 ttgactt 106  Q
    |||||||    
T  31210325 ttgactt 31210319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 10248761 - 10248565
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| | ||||||| |||  ||| |||||||||||||||||| | |||||||| |||| |||||||| ||||||||| | ||||||||||    
T  10248761 ttgtgtggtggtttccggtgggccagttacttttgcttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcttgatttggtgtttctctggt 10248663  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||| ||||| |||||||| ||  ||||||| || ||| | | ||  || ||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  10248662 gtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagttctttggctcaagtt 10248565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 15821606 - 15821379
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || |||||||||||||||| |||| |   |||||||| ||  |||  ||| |||||||| |||  | | ||||||||||||  |||||| ||    
T  15821606 catgtctatcgtcttacatattgtgtgttggtatctggtgggccgattattttttctttgagatcggaagttggtgcctagctacaatc-ctgtttggct 15821508  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| ||  | ||||||||||||| | ||||||||||||||| ||| ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||    
T  15821507 tgatatg-gtgttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtc 15821409  T
Q  206 agttctttgactcaagttggtttttgggct 235  Q
    || ||||||||| | |||||||||||||||    
T  15821408 agctctttgacttatgttggtttttgggct 15821379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 133 - 243
Target Start/End: Complemental strand, 16457562 - 16457453
Alignment:
Q  133 gggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||||||| || ||||||||| ||||||||| ||  || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |    
T  16457562 gggcgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttag 16457464  T
Q  233 gctctgtgttg 243  Q
    ||| |||||||    
T  16457463 gctttgtgttg 16457453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 17657209 - 17657005
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| |  |||||||||| |||| |||||||||||||||||| | | ||||||||||||||  |||| | ||||||| | |||||||| |    
T  17657209 ttgtgtgttggtttccgatgggccggttaattttgcttcgagatcgggagtcggtggctagctacaatctta-tttggcgtgatttggtgtttctctgat 17657111  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| |||   |||||||||||  |||| ||||  ||| ||| ||  ||| |||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  17657110 gtaccgggat-gaggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttg 17657012  T
Q  226 tttttgg 232  Q
     ||||||    
T  17657011 gttttgg 17657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 131 - 243
Target Start/End: Complemental strand, 12898378 - 12898266
Alignment:
Q  131 gggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttttt 230  Q
    |||||||||||||||||   |||||||||| |||||||||  |  ||||||||||||||||||||||| |||||||||| | | |||||||||||||||     
T  12898378 gggggcgaggggtgccctattaatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttg 12898279  T
Q  231 gggctctgtgttg 243  Q
    ||||| |||||||    
T  12898278 gggctttgtgttg 12898266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 20138448 - 20138515
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||| |||||||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggctttgtgttg 20138515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 243
Target Start/End: Complemental strand, 41893474 - 41893393
Alignment:
Q  161 ctatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||  ||||| | |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||    
T  41893474 ctatagtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagtt-gtttttgggctttgtgttg 41893393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 30236247 - 30236128
Alignment:
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttga 215  Q
    ||||||||||| || |||||  ||||||||||  || |||||||  |  ||||||  ||| ||||| |||||||||||||||| |||||||||||||||     
T  30236247 tttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttgg 30236148  T
Q  216 ctcaagttggtttttgggct 235  Q
     ||||||| | |||||||||    
T  30236147 ttcaagtttggttttgggct 30236128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 15906705 - 15906767
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||| |||||||||||||| |||||||||||||||  ||||||| | |||||||||    
T  15906705 gggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggct 15906767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 32945765 - 32945703
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| ||||||| | |||||||||    
T  32945765 gggctgatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggct 32945703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Original strand, 33967345 - 33967375
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggag 203  Q
    |||||||||||||||||||||||||||||||    
T  33967345 gggccgatcacttttgattcgagatcaggag 33967375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 40531243 - 40531281
Alignment:
Q  165 agtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  40531243 agtctgatgggccgatcacttttgattcgagatcgggag 40531281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 3679471 - 3679515
Alignment:
Q  179 atcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||||||||||||| |||||| || |||||| |||||||    
T  3679471 atcacttttgattcgagatcgggagtcggtgctttgattcaagtt 3679515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 12883497 - 12883533
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagtt 209  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  12883497 gggccgatcgcttttgattcgagatcaggagttagtt 12883533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 39339099 - 39338857
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  39339099 catgccatgtctttcgtcttacatattgtgtgctggttttcggtgggccagttcatttggcttcgagatcgggagtcggggtctagctgcaatatttgtt 39339000  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||| |    
T  39338999 tgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgg 39338900  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  39338899 gagtcagttctttgactcaagttggtttttgggctttgtgttg 39338857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 10523944 - 10524190
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| | |||||||||||    
T  10523944 catgccatgtctttcatcttacatattgtgtgctggttttcggtggaccggttcatttggcttcgagatcgggagtcgggctctagttgcaatctttgtt 10524043  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||| || |||||||| ||||||||||  |||||||||||||||||||||||||| |    
T  10524044 tgacttgatttggtttttctctggtctactgggggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgg 10524143  T
Q  201 gagtca----gttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||     |||||||||||||||||||||||||||| |||||||    
T  10524144 gagtcaatatattctttgactcaagttggtttttgggctttgtgttg 10524190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 235
Target Start/End: Original strand, 7874145 - 7874372
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || ||||| ||||||||||||||| | | |||||||||||  ||| |||||||||||||||||  | |||||||| ||||| | | ||||||    
T  7874145 catgtctatcgtcttaaatattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcct-gcttgact 7874243  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| || | || |||| |||||| | |||||| |||||||| ||| ||||||| ||| ||||||  ||| |||||||||||||||||||||| ||||||    
T  7874244 tgatatggtgtt-ctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtc 7874342  T
Q  206 agttctttgactcaagttggtttttgggct 235  Q
    || |||||||||||||||||||||||||||    
T  7874343 agctctttgactcaagttggtttttgggct 7874372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 17105264 - 17105456
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    |||||||||||||||||||||||||||||||||| | ||||| |||||  ||| |||| |||||  |||||| | |||||||| ||| | ||||||||||    
T  17105264 catgtctttcatcttacatattgtgtgctggtttccggtgggtcggttacttttgcttggagataaggagtcggcgtctagctgcaa-ccttgtttgact 17105362  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcac-ttttgattcgagatc 198  Q
    | ||| | | ||||| ||||||||  |||| |||||||||||  || ||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  17105363 taattaggtgtttctttggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctgatgggccgatcactttttgattcgagatc 17105456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 387151 - 387250
Alignment:
Q  132 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 231  Q
    |||||||||||||||| ||||||||||||||| ||||||  |||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  387151 ggggcgaggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttg 387250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 14405162 - 14405279
Alignment:
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    ||||||||||||| |||||||||||||||   | | ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| |||||| |    
T  14405162 ttctctggtgtaccgggggcgaggggtgctt-gatgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggc 14405260  T
Q  217 tcaagttggtttttgggct 235  Q
    |||||||||||||||||||    
T  14405261 tcaagttggtttttgggct 14405279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 233
Target Start/End: Original strand, 1269373 - 1269562
Alignment:
Q  44 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 143  Q
    |||| ||||| |||| ||||||||||||||||||   |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  1269373 tgggtcggttaattttgcttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 1269472  T
Q  144 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    ||||  || |||| || ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||    
T  1269473 gcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 14106734 - 14106546
Alignment:
Q  24 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 123  Q
    ||||||||| |||||| | |||||||||||  ||| |||||||||  ||||||| | | |||||| ||||| | ||||||||||||||| | || ||||     
T  14106734 tattgtgtgttggtttccggtgggccggttacttttgcttcgagacagggagtcggtgactagctgcaatcct-gtttgacttgatttggtgttcctctc 14106636  T
Q  124 gtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
     |||||   ||||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||| ||||| |||||||| |||||    
T  14106635 atgtacccagggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagctcttt 14106546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 13337285 - 13337352
Alignment:
Q  165 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    ||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||| | ||||||    
T  13337285 agtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttgg 13337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 37770849 - 37770663
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||| |||||||| || |||||||||||  ||| |||||||||||||||||  | |||||||  |||| |   |||| |  |||||  | ||||||||||    
T  37770849 ttgtttgctggttatcggtgggccggttacttttgcttcgagatcgggagttggtgtctagcagcaat-tcgatttggcgcgatttagtgtttctctggt 37770751  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
    |||| | ||| |||||||||||| || ||||||| |||  || ||  ||||||||||||||||||||  |||||||||||| ||||||    
T  37770750 gtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcacttttgattctggatcaggagtcaattcttt 37770663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 4471942 - 4472004
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||| | |||||||||||||| |||||||||||||||| ||||||| |||||||||||    
T  4471942 gggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggct 4472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 22885195 - 22885135
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||| | |||||||    
T  22885195 gggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg 22885135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 16960001 - 16960063
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||| ||||||||||||||||  |||||||||||||| |||||||| | |||||||||    
T  16960001 gggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggct 16960063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 34230220 - 34230282
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||| |||| ||||||||||||||||||||||||||  ||||||| | |||||||||    
T  34230220 gggccgatcattttttattcgagatcaggagtcagttctttggatcaagtttgattttgggct 34230282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 7695985 - 7696044
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||||||||||| | | ||||||||||||||| |||||||| | |||||||||    
T  7695985 ccgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggct 7696044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 2062908 - 2062970
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||  |||||||||||||||| |||||||| |||||| |||||||| | |||||||||    
T  2062908 gggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggct 2062970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 10173640 - 10173578
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||||||||||||||||||| | ||| |||| |||| |||||||| | |||||||||    
T  10173640 gggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggct 10173578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 15126472 - 15126410
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||| ||||||||||||||| |||||| |||||||| |||| ||| | |||||||||    
T  15126472 gggccgatcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggct 15126410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 41086994 - 41086823
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||| ||||| | |||| ||| ||  ||| |||| |||||||||| || | ||| ||||||||| |||||||| | ||||||| | || |||||||    
T  41086994 ttgtgtgcaggtttccggtggaccgattacttttgctttgagatcgggaatcggtgtccagctacaat-tttgtttggcgtgatttggtgtt-ctctggt 41086897  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||  |||| ||||| |||||  || |||||||  |||||||||  ||| | ||||||||||||||||||||||    
T  41086896 gtaccaggggtgaggg-tgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatcag 41086823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 5254275 - 5254337
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||||||| ||| |||||| |||||| | ||||||  ||||||||||||| |||||    
T  5254275 gggccgatcacttttaatttgagatcgggagtctgctctttggttcaagttggttttcgggct 5254337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 16952443 - 16952386
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  16952443 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 16952386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 17023108 - 17023051
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17023108 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17023051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 17060414 - 17060357
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17060414 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17060357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 17079190 - 17079247
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17079190 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17079247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 27739936 - 27740029
Alignment:
Q  115 ttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 208  Q
    |||||||||||| ||||||||  ||||||||||| ||   ||||| ||  ||||||  ||||||||| |||||||||| |||||  ||||||||    
T  27739936 ttttctctggtggactgggggttaggggtgcccatctggattggtcctgaagtctggtgggccgatcgcttttgattcaagatcgagagtcagt 27740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 33788694 - 33788653
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  33788694 gggccgatcgcttttgattcgagattgggagtcagttctttg 33788653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 42048278 - 42048229
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagt 222  Q
    |||| ||||||||||||||||||| | |||| ||||| ||||||||||||    
T  42048278 gggctgatcacttttgattcgagaccgggagccagttttttgactcaagt 42048229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 23650384 - 23650444
Alignment:
Q  153 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
    ||||||| ||| ||||||  |||| |||| |||||||||||||||| ||||||| ||||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtcatttcttt 23650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 37831024 - 37831072
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||||||||||||| ||| | ||||||||  ||||||||||||    
T  37831024 gccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagtt 37831072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 698208 - 698450
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  698208 catgccatgtctttcgtcttacatattgtgtgctggtttttagtgggccggttcatttggcttcgagatcgggagtcagggtctagttgcaatctttgtt 698307  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||  || |||||| |||||||||||||||| |    
T  698308 tgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgg 698407  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||  ||||||||||||||||||||||||||| |||||||    
T  698408 gagtcaactctttgactcaagttggtttttgggctttgtgttg 698450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 18593090 - 18593324
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  18593090 catgccatgtctttcgttttacatattgtgtgctgattttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagttgcaatctttgtt 18593189  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||||| |||||| ||||||||||| ||||| ||||||||||| ||||||| |   |||| ||||||||||||||||||||| |    
T  18593190 tgacttgatttggtttttctctcgtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcgg 18593289  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
    |||| ||||||||||||||||||||||||||||||    
T  18593290 gagttagttctttgactcaagttggtttttgggct 18593324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 2 - 235
Target Start/End: Original strand, 34377946 - 34378179
Alignment:
Q  2 atgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgttt 101  Q
    ||||||| |||||| ||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  34377946 atgccatatctttcgtcttatatatcgtgtgctggttttcggtaggccggttcatttggcttcgagatcgggagtcgaggtctagctgcaatctttgttt 34378045  T
Q  102 gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagg 201  Q
    |||||||||||  ||||||||||||||| |||||| ||| |||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||| ||    
T  34378046 gacttgatttgggttttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcggg 34378145  T
Q  202 agtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||||||| ||||||||||||||||||    
T  34378146 agtcagttctttgacacaagttggtttttgggct 34378179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 37 - 235
Target Start/End: Original strand, 29087364 - 29087562
Alignment:
Q  37 ttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggc 136  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| |||| |  ||||||| ||||| ||||||    
T  29087364 ttttcggtgggccggttcatttggcttcgagatcgggagtcggagtctagctgcaatctttgtttgacttgttttggtaattctctgttgtaccgggggc 29087463  T
Q  137 gaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||| | |||| |||||| ||| ||||||  || | |||| ||||||||||||||||||||||||||||||||| |||| ||||||| ||||||    
T  29087464 gaggggtgctctgctattttggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggct 29087562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 13954441 - 13954234
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||| ||||||||||| |||||||||||  ||| |||||||||||  ||||| | |||||||| |||||||  |||||||||||||  | ||||||||||    
T  13954441 ttgtatgctggttttcggtgggccggttacttttgcttcgagatcaagagtcggtgtctagctgcaatctta-tttgacttgattttgtgtttctctggt 13954343  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| |  || ||||||||||   || ||||||| ||| ||||||  |||||||||||||||||||||||||| ||||||| | ||||| |||||||| |    
T  13954342 gtaccgaaggtgaggggtgcctt-ctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttg 13954244  T
Q  226 tttttgggct 235  Q
     |||||||||    
T  13954243 gttttgggct 13954234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 7392205 - 7392052
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||  | |||||||| ||||||| ||||| ||||||||| | |||||||| ||||| | ||| |||||||||||  || |||||||    
T  7392205 gcttcgagatcgggagttggtgtctagctgcaatctt-gtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgatttggt 7392107  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
     ||| ||||||  || ||||||||||||||||||||||| |||||||||||||||    
T  7392106 cctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttg 7392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 8297347 - 8297546
Alignment:
Q  32 gctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactg 131  Q
    ||||||||||||||||||| ||  ||| |||||||||||| ||||  | |||||||| |||| |||||||  ||||||||| | ||||||| |||||| |    
T  8297347 gctggttttcagtgggccgattacttttgcttcgagatcgagagttggtgtctagctgcaat-tttgttttgcttgatttggtgtttctctagtgtaccg 8297445  T
Q  132 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 231  Q
     ||| |||||||||||  || ||||||| ||| ||  ||  ||||  || | ||||||||||||||| ||||||||||||||| |||||||| | |||||    
T  8297446 agggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggctcaagtttggttttg 8297545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 7195447 - 7195251
Alignment:
Q  26 ttgtgtgctggttttc-agtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctgg 124  Q
    ||||||| |||||||| |||||||| |||  ||| |||||||||||||||||| | | |||||| |||| || ||||| | ||||||  | |||||||||    
T  7195447 ttgtgtgttggttttccagtgggccagttacttttgcttcgagatcgggagtcggtggctagctgcaatatt-gtttggcgtgatttagtgtttctctgg 7195349  T
Q  125 tgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||  |||  |||||||||||  || ||||||   || ||||||  | |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  7195348 tgtaccagggt-gaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 33259050 - 33258903
Alignment:
Q  66 agatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactata 165  Q
    |||||||||||| |  ||||||||||||||| ||||| |  |||||| | |||||||||||||| |  || |||||||| ||  ||  |||||| ||| |    
T  33259050 agatcgggagtcggtatctagctacaatctt-gtttggcgcgatttggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaa 33258952  T
Q  166 gtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    |||||  |||||||||||||||||||||||||||||||| |||||||||    
T  33258951 gtctggtgggccgatcacttttgattcgagatcaggagttagttctttg 33258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 235
Target Start/End: Complemental strand, 14302604 - 14302430
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||||| |||||||| ||| ||  ||||| | |||| || | |||||||||||||  | ||| ||||| |||||  ||  ||||||    
T  14302604 gcttcgagatcgggagtccgtgtctagctgcaagcta-gtttggcgtgatctggtgtttctctggtgtatcgagggtgagggatgcccttctgttttggt 14302506  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
     ||| ||||||  || | ||||||||||| ||||||||  |||||||||||||||   |||||| | |||||||||    
T  14302505 cctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttggagcaagtttggttttgggct 14302430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 22675375 - 22675324
Alignment:
Q  184 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||||||| ||||||||||||||| |||||||| | |||||||||    
T  22675375 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggct 22675324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 25991936 - 25992066
Alignment:
Q  82 tctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatc 181  Q
    ||||||| ||||||| |||||||  |||||||| ||| |||||||||| |  |  |||| ||||||  ||| |||||| ||| ||||||  ||||| |||    
T  25991936 tctagctgcaatctt-gtttgacacgatttgatgtttttctggtgtaccgaagatgaggagtgcccttctattttggtgctaaagtctggtgggccaatc 25992034  T
Q  182 acttttgattcgagatcaggagtcagttcttt 213  Q
     ||||||||||||||||  |||||||||||||    
T  25992035 gcttttgattcgagatcgagagtcagttcttt 25992066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 31721639 - 31721734
Alignment:
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttct 211  Q
    ||||||||||| || |||||  ||||||||||  || || |||| ||  ||||| | ||||||||| |||||||||||||||| ||||||||||||    
T  31721639 tttctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagttct 31721734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 21402899 - 21402853
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactca 219  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||    
T  21402899 gggccgatcacttttagttcgagatcgggagtcagttctttgactca 21402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 27713088 - 27713150
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||  ||||||||||||||| ||| ||||||||||| |||||||| | |||||||||    
T  27713088 gggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggct 27713150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 7162352 - 7162319
Alignment:
Q  200 ggagtcagttctttgactcaagttggtttttggg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  7162352 ggagtcagttctttgactcaagttggtttttggg 7162319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 39184249 - 39184208
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  39184249 gggccgatcacttttgattcgagatcggaagtcagttctttg 39184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 26046023 - 26045967
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    ||||||||||||||||||||||| ||||| |||  |||| |||||||| | ||||||    
T  26046023 ccgatcacttttgattcgagatcgggagttagtgttttggctcaagtttggttttgg 26045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 30964288 - 30964530
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||    
T  30964288 catgccatgtctttcgtcttacttattgtgtgctggttttcgatgggccggttcatttggcttcgagatcggaagtcggggtctagctgcaatctttgtt 30964387  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||| |    
T  30964388 tgacttgatttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgatcgg 30964487  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||| ||||||||||||||||||||||||||| | |||||||    
T  30964488 gagtccgttctttgactcaagttggtttttgggttttgtgttg 30964530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8254874 - 8255108
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||  |||||||||  ||||||||||    
T  8254874 catgccatgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtt 8254973  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    | |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||| |||||||||    
T  8254974 tcacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcag 8255073  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
     ||||||||||||||||||||||||||||||||||    
T  8255074 aagtcagttctttgactcaagttggtttttgggct 8255108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 8268292 - 8268526
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||  |||||||||  ||||||||||    
T  8268292 catgccatgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtt 8268391  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    | |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||| |||||||||    
T  8268392 tcacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcag 8268491  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
     ||||||||||||||||||||||||||||||||||    
T  8268492 aagtcagttctttgactcaagttggtttttgggct 8268526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 4305574 - 4305814
Alignment:
Q  3 tgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttg 102  Q
    ||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||    
T  4305574 tgccatgtcttttgtcttacatattgtgtactggttttcggtgggccggttcatttggcttcgagatcgggagtcgggggctagttgcaatctttgtttg 4305673  T
Q  103 acttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagga 202  Q
    ||| |||||  |||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||| |||    
T  4305674 actggatttcgtttttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcggga 4305773  T
Q  203 gtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    || ||||||||| ||||||||||||||| |||| |||||||    
T  4305774 gttagttctttgtctcaagttggtttttaggctttgtgttg 4305814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 62 - 243
Target Start/End: Complemental strand, 30167736 - 30167556
Alignment:
Q  62 ttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtac 161  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||   |||||| || ||| |  |||| ||||||||||| ||  ||||||||     
T  30167736 ttcgagatcgggagtcggggtctagctacaatctttgtttgatttgatttaggttttctttgatgtgc-cggggtgaggggtgccctgcctatttggtat 30167638  T
Q  162 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||    ||| |||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| | |||||||    
T  30167637 tatagtcaagtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggggtttgtgttg 30167556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 235
Target Start/End: Original strand, 25753045 - 25753253
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||| ||||||||| |  ||||| | || |||| |||||||||||||||||| | |||||||| ||||||| ||||| | |||| || | ||||||||||    
T  25753045 ttgtttgctggtttccgatgggcagcttaattttgcttcgagatcgggagtcggtgtctagctgcaatctt-gtttggcgtgatgtggtgtttctctggt 25753143  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| || || |||| ||||||  || ||||||| ||| ||||||  ||| |||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  25753144 gtaccggaggtgaggagtgcccgtcttatttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttg 25753243  T
Q  226 tttttgggct 235  Q
     |||||||||    
T  25753244 attttgggct 25753253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 53823612 - 53823423
Alignment:
Q  43 gtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagggg 142  Q
    |||||||||||  ||| |||||||||||||||||| | ||||| || ||||||| | ||| ||||| ||| | |||||||||||||| || || ||||||    
T  53823612 gtgggccggttacttttgcttcgagatcgggagtcggtgtctaactgcaatctt-gcttggcttgacttggtgtttctctggtgtaccggaggtgagggg 53823514  T
Q  143 tgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    |||||  || |||||||  || ||||||  || || |||||||||||||||||||| ||||||||||||||| |||||||| | |||||||    
T  53823513 tgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 31050871 - 31050662
Alignment:
Q  24 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 123  Q
    |||| |||| |||||| | |||||||||||  ||| ||||||||| |||||||| | | |||||| ||||| | |||||||||||| || | || || ||    
T  31050871 tattatgtgttggtttccggtgggccggttacttttgcttcgagaccgggagtcggtgactagctgcaatcct-gtttgacttgatatggtgtt-ctttg 31050774  T
Q  124 gtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
     ||||| |||||||||||||||||  || ||||||| ||| ||||||  |||||||||||||||||||||||||| | ||| || ||||||  |  ||||    
T  31050773 atgtaccgggggcgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagtt 31050674  T
Q  224 ggtttttgggct 235  Q
    ||||||||||||    
T  31050673 ggtttttgggct 31050662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 19672989 - 19673169
Alignment:
Q  41 cagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagg 140  Q
    |||||||||||||  ||| |||||||||||||||||| | |||||||| ||||| ||||||| |||||| |||| ||||||||||  |  ||||| ||||    
T  19672989 cagtgggccggttacttttgcttcgagatcgggagtcagtgtctagctgcaatc-ttgtttggcttgatatgatatttctctggttgatcgggggtgagg 19673087  T
Q  141 ggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||  ||  |||||| ||| ||||||  || ||  || ||||| |||||||||||||||||||||||||| ||||||||    
T  19673088 ggtgcccttctgttttggtcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtt 19673169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 22811367 - 22811172
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||||||||| ||||| |||||  ||| ||||||||||||| | |  | |||||| | |||| ||||||||   ||||||| | ||||||||||    
T  22811367 ttgtgtgctggttttcggtgggtcggttacttttgcttcgagatcggaacttggtgtctagttgcaat-tttgtttggtgtgatttggtgtttctctggt 22811269  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||| | |||| |||| ||||||  || |||||||  || ||||||  |||||||||| |||| |||||||||| ||||||||||||||| ||||||||    
T  22811268 gta-tcggggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtt 22811172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 19815415 - 19815236
Alignment:
Q  43 gtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagggg 142  Q
    ||||||| |||  ||| |||||||||||| ||||| | |||||||| ||||||| ||||| |||||| |  | ||| ||||||  || ||||| ||||||    
T  19815415 gtgggccagttacttttgcttcgagatcgagagtcggtgtctagctgcaatctt-gtttggcttgatattgtatttttctggttgaccgggggtgagggg 19815317  T
Q  143 tgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||  ||  |||||| ||| ||||||  || ||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  19815316 tgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagtt 19815236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 39421187 - 39421042
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    ||||||||||||||| || | |||||||| ||||||| ||||| | ||||||| | |||||||  ||||||| ||| |||||||||||  || || ||||    
T  39421187 gcttcgagatcgggaatcggtgtctagctgcaatctt-gtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatggt 39421089  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtca 206  Q
      ||||| |||  |||||||||||||||||||||||||| |||||||    
T  39421088 cttatagcctggtgggccgatcacttttgattcgagatcgggagtca 39421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 2825691 - 2825864
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||| | ||||  | |||||||| ||||| | |||||||||||| || | || ||||||||||| | ||||||||||||| | ||| |||||||    
T  2825691 gcttcgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctctggtgtaccgagggcgaggggtgctctgctgatttggt 2825788  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
     ||| |||| |  |||||||||| ||||||||||||||| ||| |||  |||||| |||||  |||||||||||||    
T  2825789 tctaaagtccggtgggccgatcatttttgattcgagatcgggaatcacctctttggctcaatgtggtttttgggct 2825864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 38929846 - 38929908
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||| | |||||||||    
T  38929846 gggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggct 38929908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 36962677 - 36962626
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  36962677 gggccgattacttttgattcgagatcaggagtcag-tctttgactcaagttgg 36962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 38637305 - 38637238
Alignment:
Q  162 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 229  Q
    |||||||||  |||||||||||||||||||||||||| ||||||| ||||||| || |||| ||||||    
T  38637305 tatagtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaagtaggtttt 38637238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 39041336 - 39041285
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttg 224  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  39041336 gggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttg 39041285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 235
Target Start/End: Complemental strand, 46698881 - 46698784
Alignment:
Q  139 ggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgggct 235  Q
    |||||||||  || ||||||| || |||||||  ||||||||  |||||||||||||||| |||||||||||||||  ||||| || |||||||||||    
T  46698881 ggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagttttgtttttgggct 46698784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 2792335 - 2792286
Alignment:
Q  174 ggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||||||||||||||||||||| | ||||||||  ||||||||||||    
T  2792335 ggccgatcacttttgattcgagatcggaagtcagtttcttgactcaagtt 2792286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 235
Target Start/End: Complemental strand, 41118040 - 41117967
Alignment:
Q  162 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||| ||||  ||||||||||||||||||||| | ||| ||||||||| ||||| || | |||||||||    
T  41118040 tatagtctggagggaagatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggct 41117967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 21387263 - 21387216
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||||||||||||||||||| | ||||||||||| || |||||||    
T  21387263 ccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtt 21387216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 235
Target Start/End: Original strand, 28966897 - 28966948
Alignment:
Q  184 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||||||  ||||||||||||||| |||||||| | |||||||||    
T  28966897 ttttgattcgagattgggagtcagttctttggctcaagtttggttttgggct 28966948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 35800511 - 35800570
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||| |||||||||||||||| | |||||||||||||| || |||| | |||||||||    
T  35800511 ccgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggct 35800570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 16501750 - 16501812
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||| |||||||||||||||| |||||||| ||||||  || |||| | |||||||||    
T  16501750 gggccgatcgcttttgattcgagatcgggagtcagctctttggttctagtttggttttgggct 16501812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 17416571 - 17416541
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggag 203  Q
    |||||||||||||||||||||||||||||||    
T  17416571 gggccgatcacttttgattcgagatcaggag 17416541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 35341391 - 35341341
Alignment:
Q  182 acttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    ||||||||| ||||||| | |||||| |||||| |||||||||||||||||    
T  35341391 acttttgatccgagatcggaagtcagctctttggctcaagttggtttttgg 35341341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 40813843 - 40813797
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactca 219  Q
    |||||||||||||||||||||||||| |||| || || |||||||||    
T  40813843 gggccgatcacttttgattcgagatcgggagccaattttttgactca 40813797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 37707417 - 37707388
Alignment:
Q  173 gggccgatcacttttgattcgagatcagga 202  Q
    ||||||||||||||||||||||||||||||    
T  37707417 gggccgatcacttttgattcgagatcagga 37707388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 12296204 - 12296256
Alignment:
Q  183 cttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||||||||||  |||||||||||||  ||||||| | |||||||||    
T  12296204 cttttgattcgagatcaaaagtcagttctttggttcaagtttgattttgggct 12296256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 49747526 - 49747586
Alignment:
Q  153 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
    ||||||| ||| ||||||  | ||||||||||||||||| ||||||  |||||||||||||    
T  49747526 atttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttt 49747586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 3117339 - 3117582
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||    
T  3117339 catgccatgtctttcatcttacatattgtgtgttggttttcagtgggccggttcatttggcttcgagattgggagtcggggtctagttgcaatctttgtt 3117438  T
Q  101 t-gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatca 199  Q
    | ||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||| |  |||||| ||  |||||||||||||||||||| |||||     
T  3117439 ttgacttgatttggtttttctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcg 3117538  T
Q  200 ggagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  3117539 ggagtcagttctttgactcaagttggtttttgggctttgtgttg 3117582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 16510502 - 16510304
Alignment:
Q  34 tggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactggg 133  Q
    ||||||||  ||||||||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||| | |    
T  16510502 tggttttcgttgggccggttacttttgcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtaccgag 16510403  T
Q  134 ggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    ||| |||||||||| ||||||||||| ||| |||||   |||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||    
T  16510402 ggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttttactcaagttggtttttgg 16510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 235
Target Start/End: Complemental strand, 20702011 - 20701803
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| |  ||||||||||  ||| |||| |||||||||| || | |||||||| |||  |||||||| | ||||||| ||||||||||||    
T  20702011 ttgtgtgatggtttccgatgggccggttacttttgctttgagatcgggattcggtgtctagctgcaaa-tttgtttggcgtgatttggtttttctctggt 20701913  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| ||||| |||||||||||  || |||||||  | ||| |||  | |||||||||||||||||||||||| ||||| ||||||||| || ||||| |    
T  20701912 gtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtttg 20701813  T
Q  226 tttttgggct 235  Q
     |||||||||    
T  20701812 gttttgggct 20701803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 15132732 - 15132611
Alignment:
Q  24 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 123  Q
    ||||||||| |||||||| |||||||||||  ||| |||||||||||||||||| | | |||||| |||||  ||||||||||||| ||  | |||||||    
T  15132732 tattgtgtgatggttttcggtgggccggttacttttgcttcgagatcgggagtcggtgactagctgcaatc-ctgtttgacttgatatg-gtgttctctg 15132635  T
Q  124 gtgtactgggggcgaggggtgccc 147  Q
     |||||||||||||||||||||||    
T  15132634 atgtactgggggcgaggggtgccc 15132611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 32935558 - 32935342
Alignment:
Q  15 catcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgat 114  Q
    |||||||||||||||||||||| || | ||||| |||||  ||| |||| |||||| | |||  | |||||||| |||||||  |||| |||| | || |    
T  32935558 catcttacatattgtgtgctggattccggtgggtcggttacttttgctttgagatcagaagttggtgtctagctgcaatcttc-tttggcttgttatggt 32935460  T
Q  115 ttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
     ||||| || || |  ||||| ||||||| |||  || ||||||| ||  ||||||  ||||||||| |||||||||||||||| ||||||||||||| |    
T  32935459 gtttctatgatggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttgg 32935360  T
Q  215 actcaagttggtttttgg 232  Q
    ||||||||| | ||||||    
T  32935359 actcaagtttgattttgg 32935342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 3880791 - 3880623
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||| ||||||||| | ||||||| |||  ||| |||| ||||||||||||| | |||||||| | ||||| ||||| | ||||||| | ||||||||||    
T  3880791 ttgtttgctggtttccggtgggccagttacttttgctttgagatcgggagtcggtgtctagctgctatctt-gtttggcatgatttggtgtttctctggt 3880693  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgag 195  Q
     ||| | ||| ||| |||||||  || ||||||| ||| ||| ||  |||||||||||||||||||||||    
T  3880692 ttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattcgag 3880623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 26216081 - 26216042
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctt 212  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  26216081 gggccgatcacttttgattcgagatcgggagtcagttctt 26216042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 34105432 - 34105479
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 220  Q
    |||||||||||||||||||||||||| ||||||||||  |||||||||    
T  34105432 gggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 12794133 - 12794173
Alignment:
Q  173 gggccgatca-cttttgattcgagatcaggagtcagttctt 212  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  12794133 gggccgatcaacttttgattcgagatcaggagtcagttctt 12794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 9224042 - 9224101
Alignment:
Q  155 ttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||| ||| ||||||  |||| |||| |||||||||||||||| |||||||||||||||    
T  9224042 ttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttg 9224101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 13423488 - 13423535
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  13423488 ccgatcacttttgattcgagatcgagagtcggttctttggctcaagtt 13423535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 26534781 - 26534742
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctt 212  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  26534781 gggccgatcacttttgattcgagattgggagtcagttctt 26534742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 33968670 - 33968625
Alignment:
Q  178 gatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||| |||||||||||||||| |||||||||||||||  |||||||    
T  33968670 gatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 33968625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 32316393 - 32316437
Alignment:
Q  179 atcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||||||||||||| | ||| |||||||||| |||||||    
T  32316393 atcacttttgattcgagatcggtagtaagttctttgattcaagtt 32316437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 20611630 - 20611864
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||| |||| |||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||| |||||||||| |||||||||||    
T  20611630 catgctatgtttttcgtcttacatattgtgtgctggttttcggtgggtcggttcatttggtttcgagatcaggagtcggggtctagctgcaatctttgtt 20611729  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||| ||  |||||||||| ||||||||||||||| |    
T  20611730 tgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagatcgg 20611829  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||||||||| |||||||||||||||||    
T  20611830 gagtcagttctttgacttaagttggtttttgggct 20611864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 243
Target Start/End: Complemental strand, 2392737 - 2392498
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  2392737 gccatgtctttcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagatcgggagtcggggtctagctgcaatctttgtttga 2392638  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    |||| |||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||  || ||||||||||||||||||||||  | ||    
T  2392637 cttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaag 2392538  T
Q  204 tcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||||||| || ||||||||||||||||| |||||||    
T  2392537 tcagttctttgtcttaagttggtttttgggctttgtgttg 2392498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19176350 - 19176583
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||| |||||||||||||||||| |||||| ||||| ||||||||||||||| |||||| |||||||||| |||||||||||    
T  19176350 catgccatgtctttcctcttacttattgtgtgctggttttcggtgggctggttcctttggcttcgagatcaggagtcggggtctagctgcaatctttgtt 19176449  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||| ||||| |||||||||| ||||| ||| | || |||||||| ||||||||||| ||| ||||||  |||||||||||||||||||||||||| |    
T  19176450 tgacttaatttggtttttctctgatgtaccgggagtga-gggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgg 19176548  T
Q  201 gagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||||||||||||||||||||||||||||    
T  19176549 gagtcagttctttgactcaagttggtttttgggct 19176583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 2394484 - 2394255
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  2394484 gccatgtctttcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagatcgggagtcggggtctagctgcaatctttgtttga 2394385  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    |||| |||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||  || ||||||||||||||||||||||  | ||    
T  2394384 cttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaag 2394285  T
Q  204 tcagttctttgactcaagttggtttttggg 233  Q
    ||||||||||| || |||||||||||||||    
T  2394284 tcagttctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 34475988 - 34475746
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||| |||||||  |||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  34475988 catgccttgtcttttgtcttacatatcgtgtgctggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtt 34475889  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||  |||||||||||||||||||||||||| |    
T  34475888 tgacttggtttgatttttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgg 34475789  T
Q  201 gagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||||||  |||| || | |||||| |||||||||| |||||||    
T  34475788 gagtcaaatcttggaattaagttgatttttgggctttgtgttg 34475746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 4 - 243
Target Start/End: Original strand, 45163699 - 45163944
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| ||||||||||||||||||||||||   | ||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||||    
T  45163699 gccatgtctttcgtcttacatattgtgtgctggtttttgataggccggttcatttggcttcaagatcggaagtcggggtctagctgcaatctttgtttga 45163798  T
Q  104 cttgatttgatttttctctgg----tgtactgggggcgaggggtgcccagctaatttggtactatagtct--gaagggccgatcacttttgattcgagat 197  Q
    |||| |||||||||||||| |    ||||| | ||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||||||    
T  45163799 cttggtttgatttttctctagtgcatgtaccgagggcgaggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcgagat 45163898  T
Q  198 caggagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    ||| |||||||| |||| || ||||||||||||||||| |||||||    
T  45163899 cagaagtcagttttttgtcttaagttggtttttgggctttgtgttg 45163944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 47235566 - 47235729
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| ||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  47235566 gccatgtctttcgtcttacataatgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcagggtctagctgcaatctttgtttga 47235665  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagt 167  Q
    |||| |||| ||||||||  |||||| ||||||||||||||||| |||||||||| ||||||||    
T  47235666 cttggtttggtttttctccagtgtaccgggggcgaggggtgccctgctaatttgggactatagt 47235729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 23328564 - 23328354
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 116  Q
    ||||||||||||||||||||| | |  ||||||||||  ||| |||||||||||||||||  | |||||||| |||| ||||||||||||||| || | |    
T  23328564 tcttacatattgtgtgctggtgtccgatgggccggtt--ttttgcttcgagatcgggagttggtgtctagctgcaat-tttgtttgacttgatatggtgt 23328468  T
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    | ||||||||||| ||||||||||||||||| | | ||||||| ||| ||| ||  || ||||||||||||||||||||||| ||||| || | |||| |    
T  23328467 t-ctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggc 23328369  T
Q  217 tcaagttggtttttg 231  Q
    |||||||||||||||    
T  23328368 tcaagttggtttttg 23328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 17550965 - 17551046
Alignment:
Q  162 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  17550965 tatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggctttgtgttg 17551046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 25647557 - 25647753
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| |  ||||||||||  ||| ||||||||| |||||||| | |||||||| |||| | |||||| | ||||||| | ||||||||||    
T  25647557 ttgtgtgttggtttccgatgggccggttacttttgcttcgagaacgggagtcggtgtctagctgcaat-tctgtttggcgtgatttggtgtttctctggt 25647655  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||| ||| | || ||||||||  || ||||||| ||| ||||||| ||||| |||||||||||||||||||| |||||  |||||||| || |||||    
T  25647656 gtaccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagatcgggagttggttctttggcttaagtt 25647753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 40023799 - 40023572
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || |||||||||||||||  |||| | | |||| ||||||  ||| ||||||||||||| |||  | |||||||| ||||| |  |||||||    
T  40023799 catgtctatcgtcttacatattgtgtattggtgtccggtggaccggttatttttgcttcgagatcggaagttggtgtctagctgcaatcatgttttgact 40023700  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| || | || |||| |||||| ||||||||||| ||||| ||| |||| ||  || ||||||  || ||||||||||||||||||||||| ||||||    
T  40023699 tgatatggtgtt-ctctagtgtaccgggggcgaggg-tgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtc 40023602  T
Q  206 agttctttgactcaagttggtttttgggct 235  Q
      ||||||| || |||||||||||||||||    
T  40023601 gattctttggcttaagttggtttttgggct 40023572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 235
Target Start/End: Complemental strand, 9584173 - 9584053
Alignment:
Q  115 ttttctctggtgtactgggggcgag-gggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
    |||||||| |||||| ||||| ||| |||||||| ||||||||| ||||| ||||||  ||  |||||||||||||||||||||| ||||||||||||||    
T  9584173 ttttctcttgtgtaccggggg-gagagggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttcttt 9584075  T
Q  214 gactcaagttggtttttgggct 235  Q
    | |||||| |||||||||||||    
T  9584074 gtctcaagatggtttttgggct 9584053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 43012372 - 43012452
Alignment:
Q  151 taatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 231  Q
    ||||||||| ||| ||||||  || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43012372 taatttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 43012452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 14193846 - 14194009
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt-ttctctggtgtactgggggcgaggggtgcccagctaatttgg 158  Q
    ||||||| |||||||||| | ||||||||||||| | || ||| | ||||||| | | |||| |||||||| ||| | |||||||||||  || ||||||    
T  14193846 gcttcgatatcgggagtcggtgtctagctacaat-tctgcttggcgtgatttggtgtgttctttggtgtaccgggagtgaggggtgcccttctgatttgg 14193944  T
Q  159 tactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    | ||| ||||||  || ||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  14193945 tcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtt 14194009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 235
Target Start/End: Original strand, 37123289 - 37123463
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||| | |||||||| |||| |||||||| | ||||||| | |||||||| ||||| |  || |||||||||||   |  ||||||    
T  37123289 gcttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttttggt 37123387  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
     ||| | | ||  |||||||||||||||||||||||||  |||||||||||||||  |||| || | |||||||||    
T  37123388 cctaaattttggtgggccgatcacttttgattcgagattgggagtcagttctttggatcaaatttggttttgggct 37123463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 45398776 - 45398877
Alignment:
Q  134 ggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    |||||||||||||| ||| ||||||   || ||||||  || |||||||||||||||||||||||  ||||||| ||||||| | |||||||||||||||    
T  45398776 ggcgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttggg 45398875  T
Q  234 ct 235  Q
    ||    
T  45398876 ct 45398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 1652948 - 1652886
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||| | |||||||||    
T  1652948 gggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggct 1652886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 235
Target Start/End: Original strand, 47945725 - 47945787
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||| | |||||||||    
T  47945725 gggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggct 47945787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 14755471 - 14755286
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||| ||| |  ||||||||||  ||| |||||||||||||||||| |  ||||||| ||||||| ||||  |  | |||| | ||||||||||    
T  14755471 ttgtgtgctgatttccgatgggccggttacttttgcttcgagatcgggagtcggtatctagctgcaatctt-gtttcgcgcgttttggtgtttctctggt 14755373  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    |||| |  || |||||||||||   |  ||| || ||| ||||||  |||||||||||||||||||| ||||| |||||||||||||||    
T  14755372 gtaccgaaggtgaggggtgccctttt--ttttgtgctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttg 14755286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 243
Target Start/End: Original strand, 31482880 - 31482973
Alignment:
Q  150 ctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtgttg 243  Q
    |||||||||| ||||||||||  |||| ||||||||||||||||||||| ||| |||  ||||  | | |||||| |||||||||| |||||||    
T  31482880 ctaatttggttctatagtctggcgggcggatcacttttgattcgagatcgggaatcaaatcttaaaattaagttgatttttgggctttgtgttg 31482973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 47235729 - 47235786
Alignment:
Q  185 tttgattcgagatcaggagtcagttctttgactcaagttggtttttgggctctgtgtt 242  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||| ||||||    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggctttgtgtt 47235786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 33144007 - 33143948
Alignment:
Q  177 cgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgggct 235  Q
    |||||||||||||||||||||| |||||||||||||||  ||||| || |||||||||||    
T  33144007 cgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggct 33143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 235
Target Start/End: Complemental strand, 39021338 - 39021276
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||||||||||||||||||| || |||||||||||||||  ||||||  | |||||||||    
T  39021338 gggccgatcacttttgattcgaggtcgggagtcagttctttggatcaagtctggttttgggct 39021276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 30127283 - 30127332
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttct-ttgactcaagtt 223  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  30127283 gccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagtt 30127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 5556580 - 5556639
Alignment:
Q  164 tagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||  ||| ||||| |||||||||||||||| |||||||||||||||  |||||||    
T  5556580 tagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 5556639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 14879421 - 14879504
Alignment:
Q  140 gggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||||  || ||| ||| ||| ||||||  |||||||||||||||||||||||||| |||||| |||| |||  |||||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagtt 14879504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 823497 - 823447
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||||||||||||||||||||||  ||||||||| ||| | |||||||    
T  823497 gggccgatcacttttgattcgagatcgagagtcagttgtttcattcaagtt 823447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 4464132 - 4464024
Alignment:
Q  37 ttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggc 136  Q
    ||||| |||||||||||  ||| |||||||||||||||||| | |||||| | ||||| |||| || | ||||||| | ||||||| |||||| | |||     
T  4464132 ttttcggtgggccggttacttttgcttcgagatcgggagtcggtgtctagttgcaatc-ttgtgtggcgtgatttggtgtttctct-gtgtaccgagggt 4464035  T
Q  137 gaggggtgccc 147  Q
    |||||||||||    
T  4464034 gaggggtgccc 4464024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 31424256 - 31424304
Alignment:
Q  174 ggccgatcacttttgattcgagatcaggagtcagttctttgactcaagt 222  Q
    ||||| || |||||||||||||||| ||||||||| |||||| ||||||    
T  31424256 ggccggtcgcttttgattcgagatcgggagtcagtgctttgattcaagt 31424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 36006 - 35772
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||    
T  36006 catgccatgtctttcgtcttacatattgtgtgctggctttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctagttgcaatctttgtt 35907  T
Q  101 tgacttga-tttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatca 199  Q
    |||||| | |||| |||||||||||||||| |||||||||||||||| ||||||||||||  ||||||||   ||||||||||||||||||||||||||     
T  35906 tgacttaattttggtttttctctggtgtaccgggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcg 35807  T
Q  200 ggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||||| |||||||||| |||||||||||||||||    
T  35806 ggagtca-ttctttgacttaagttggtttttgggct 35772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 44 - 235
Target Start/End: Original strand, 19273 - 19464
Alignment:
Q  44 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 143  Q
    |||| ||||| |||| |||||||||||||||||| | |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  19273 tgggtcggttaattttgcttcgagatcgggagtcggtgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 19372  T
Q  144 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggct 235  Q
    ||||  || ||||||| ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||||    
T  19373 gcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggct 19464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 36580 - 36773
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| | |||||||| || |||| | ||||||||| |||||| | |||||||| |||| |||||||| | ||||||| | ||||||||||    
T  36580 ttgtgtgttggtttccggtgggccgattaattttgattcgagatcaggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctggt 36678  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 220  Q
    |||| | | | |||||||||||  || ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  36679 gtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtctcaa 36773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 42329 - 42140
Alignment:
Q  44 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 143  Q
    |||| ||||| |||| ||||||||||||||||||   |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  42329 tgggtcggttaattttgcttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 42230  T
Q  144 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    ||||  || |||| || ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||    
T  42229 gcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 42140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 1233 - 1038
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgattt-gatt 115  Q
    |||||||||||||||||||| ||  ||||||||| ||  ||| |||||||||| ||||||  | |||||||| ||||||| |||||| ||||||| | |     
T  1233 tcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatctt-gtttga-ttgattttggtg 1136  T
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||||||| ||||||   ||||||| |||  || |||||||  |  ||||||  ||||||||| |||||||||||||||| |||||||||||||||    
T  1135 tttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 1038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 58000 - 58196
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||| ||| || | ||||||||  ||| ||||||||||||||||||   |||||||| ||||| ||||||| | ||||||| | ||||||||||    
T  58000 ttgtgtgctgatttccattaggccggttacttttgcttcgagatcgggagtcgttgtctagctgcaatc-ttgtttggcgtgatttggtgtttctctggt 58098  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||   ||| |   |||||||  |  ||||||| ||| ||| ||  |||||||||||||||||||| ||||| | ||||| || ||||  |||||||    
T  58099 gtacctagggtgtatggtgcccttcagatttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtt 58196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 3849 - 3896
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 220  Q
    |||||||||| ||||||||||||||| ||||||||||  |||||||||    
T  3849 gggccgatcaattttgattcgagatcgggagtcagtttcttgactcaa 3896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 235
Target Start/End: Original strand, 5751 - 5786
Alignment:
Q  200 ggagtcagttctttgactcaagttggtttttgggct 235  Q
    |||||||||||||||||||| |||||||||||||||    
T  5751 ggagtcagttctttgactcaggttggtttttgggct 5786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University