View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15758_low_21 (Length: 251)

Name: NF15758_low_21
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15758_low_21
NF15758_low_21
[»] chr1 (28 HSPs)
chr1 (1-234)||(5389422-5389655)
chr1 (1-234)||(41920300-41920532)
chr1 (1-234)||(31585761-31585994)
chr1 (1-234)||(46692820-46693053)
chr1 (8-234)||(30685905-30686131)
chr1 (4-233)||(24449932-24450161)
chr1 (1-233)||(20113523-20113755)
chr1 (1-234)||(24684479-24684710)
chr1 (17-232)||(7857518-7857731)
chr1 (6-234)||(24658783-24659009)
chr1 (44-230)||(46814472-46814656)
chr1 (126-234)||(5459133-5459241)
chr1 (26-234)||(32864562-32864771)
chr1 (117-229)||(27031846-27031958)
chr1 (60-214)||(9313310-9313463)
chr1 (17-214)||(38544759-38544954)
chr1 (60-209)||(34774779-34774925)
chr1 (139-223)||(17033571-17033655)
chr1 (173-234)||(27102210-27102271)
chr1 (173-233)||(19598655-19598715)
chr1 (26-77)||(10785489-10785540)
chr1 (116-208)||(4651742-4651834)
chr1 (17-74)||(50589365-50589422)
chr1 (176-215)||(27905434-27905473)
chr1 (26-88)||(6583337-6583399)
chr1 (173-223)||(15840924-15840974)
chr1 (153-214)||(6583237-6583298)
chr1 (173-209)||(30655579-30655615)
[»] chr7 (31 HSPs)
chr7 (1-234)||(38306108-38306341)
chr7 (1-234)||(47325886-47326119)
chr7 (1-234)||(3419657-3419890)
chr7 (1-232)||(10244031-10244260)
chr7 (4-234)||(5860289-5860519)
chr7 (1-234)||(3866964-3867196)
chr7 (19-234)||(37794865-37795069)
chr7 (1-235)||(33434957-33435190)
chr7 (65-231)||(41089752-41089918)
chr7 (1-234)||(25160662-25160895)
chr7 (29-234)||(35745828-35746031)
chr7 (6-234)||(34389815-34390042)
chr7 (17-223)||(6716748-6716953)
chr7 (122-234)||(6584877-6584989)
chr7 (26-234)||(8745026-8745233)
chr7 (26-223)||(42533264-42533460)
chr7 (26-191)||(44755500-44755663)
chr7 (176-234)||(44353565-44353623)
chr7 (27-223)||(16954527-16954722)
chr7 (60-223)||(1320701-1320863)
chr7 (164-223)||(13311849-13311908)
chr7 (131-221)||(3478329-3478419)
chr7 (106-223)||(24324810-24324927)
chr7 (173-232)||(12480905-12480965)
chr7 (107-223)||(16828948-16829064)
chr7 (116-208)||(38485518-38485610)
chr7 (154-212)||(9428128-9428186)
chr7 (26-223)||(11379139-11379335)
chr7 (173-211)||(9349768-9349806)
chr7 (165-223)||(47457034-47457092)
chr7 (175-234)||(46133278-46133338)
[»] chr8 (22 HSPs)
chr8 (2-234)||(24995396-24995628)
chr8 (1-234)||(9519346-9519579)
chr8 (1-234)||(34389006-34389239)
chr8 (1-234)||(32066296-32066529)
chr8 (1-231)||(37986862-37987092)
chr8 (1-234)||(36630684-36630917)
chr8 (102-233)||(31207364-31207494)
chr8 (1-106)||(31210319-31210425)
chr8 (26-223)||(10248565-10248761)
chr8 (6-234)||(15821380-15821606)
chr8 (26-232)||(17657005-17657209)
chr8 (133-230)||(16457466-16457562)
chr8 (131-234)||(12898275-12898378)
chr8 (176-234)||(20138448-20138506)
chr8 (161-234)||(41893402-41893474)
chr8 (116-234)||(30236129-30236247)
chr8 (173-234)||(15906705-15906766)
chr8 (173-234)||(32945704-32945765)
chr8 (173-203)||(33967345-33967375)
chr8 (165-203)||(40531243-40531281)
chr8 (179-223)||(3679471-3679515)
chr8 (173-209)||(12883497-12883533)
[»] chr2 (29 HSPs)
chr2 (1-234)||(39338866-39339099)
chr2 (1-234)||(10523944-10524181)
chr2 (6-234)||(7874145-7874371)
chr2 (6-198)||(17105264-17105456)
chr2 (132-231)||(387151-387250)
chr2 (44-233)||(1269373-1269562)
chr2 (24-213)||(14106546-14106734)
chr2 (117-234)||(14405162-14405278)
chr2 (165-232)||(13337285-13337352)
chr2 (26-213)||(37770663-37770849)
chr2 (173-234)||(4471942-4472003)
chr2 (173-233)||(22885135-22885195)
chr2 (173-234)||(16960001-16960062)
chr2 (173-234)||(34230220-34230281)
chr2 (176-234)||(7695985-7696043)
chr2 (26-200)||(41086823-41086994)
chr2 (173-234)||(2062908-2062969)
chr2 (173-234)||(10173579-10173640)
chr2 (173-234)||(15126411-15126472)
chr2 (173-234)||(5254275-5254336)
chr2 (175-232)||(16952386-16952443)
chr2 (175-232)||(17023051-17023108)
chr2 (175-232)||(17060357-17060414)
chr2 (175-232)||(17079190-17079247)
chr2 (115-208)||(27739936-27740029)
chr2 (173-214)||(33788653-33788694)
chr2 (173-222)||(42048229-42048278)
chr2 (153-213)||(23650384-23650444)
chr2 (175-223)||(37831024-37831072)
[»] chr5 (18 HSPs)
chr5 (1-234)||(698208-698441)
chr5 (1-234)||(18593090-18593323)
chr5 (2-234)||(34377946-34378178)
chr5 (37-234)||(29087364-29087561)
chr5 (26-234)||(13954235-13954441)
chr5 (60-214)||(7392052-7392205)
chr5 (32-232)||(8297347-8297546)
chr5 (26-223)||(7195251-7195447)
chr5 (66-214)||(33258903-33259050)
chr5 (60-214)||(14302451-14302604)
chr5 (82-213)||(25991936-25992066)
chr5 (116-211)||(31721639-31721734)
chr5 (173-219)||(21402853-21402899)
chr5 (184-234)||(22675325-22675375)
chr5 (200-233)||(7162319-7162352)
chr5 (173-234)||(27713088-27713149)
chr5 (173-214)||(39184208-39184249)
chr5 (176-232)||(26045967-26046023)
[»] chr4 (29 HSPs)
chr4 (1-233)||(30964288-30964520)
chr4 (1-234)||(8254874-8255107)
chr4 (1-234)||(8268292-8268525)
chr4 (3-230)||(4305574-4305801)
chr4 (62-233)||(30167566-30167736)
chr4 (26-234)||(25753045-25753252)
chr4 (43-233)||(53823423-53823612)
chr4 (41-223)||(19672989-19673169)
chr4 (24-234)||(31050663-31050871)
chr4 (26-223)||(22811172-22811367)
chr4 (43-223)||(19815236-19815415)
chr4 (60-206)||(39421042-39421187)
chr4 (60-234)||(2825691-2825863)
chr4 (173-234)||(38929846-38929907)
chr4 (173-225)||(36962626-36962677)
chr4 (162-229)||(38637238-38637305)
chr4 (173-224)||(39041285-39041336)
chr4 (139-223)||(46698797-46698881)
chr4 (174-223)||(2792286-2792335)
chr4 (162-234)||(41117968-41118040)
chr4 (176-223)||(21387216-21387263)
chr4 (173-203)||(17416541-17416571)
chr4 (184-234)||(28966897-28966947)
chr4 (182-232)||(35341341-35341391)
chr4 (176-234)||(35800511-35800569)
chr4 (173-219)||(40813797-40813843)
chr4 (173-214)||(16501750-16501791)
chr4 (173-202)||(37707388-37707417)
chr4 (153-213)||(49747526-49747586)
[»] chr6 (14 HSPs)
chr6 (1-234)||(3117339-3117573)
chr6 (34-232)||(16510304-16510502)
chr6 (26-234)||(20701804-20702011)
chr6 (24-147)||(15132611-15132732)
chr6 (15-232)||(32935342-32935558)
chr6 (26-195)||(3880623-3880791)
chr6 (173-212)||(26216042-26216081)
chr6 (173-220)||(34105432-34105479)
chr6 (173-212)||(12794133-12794173)
chr6 (155-214)||(9224042-9224101)
chr6 (176-223)||(13423488-13423535)
chr6 (173-212)||(26534742-26534781)
chr6 (178-223)||(33968625-33968670)
chr6 (179-223)||(32316393-32316437)
[»] chr3 (29 HSPs)
chr3 (1-234)||(20611630-20611863)
chr3 (4-234)||(2392507-2392737)
chr3 (4-233)||(2394255-2394484)
chr3 (1-234)||(19176350-19176582)
chr3 (1-234)||(34475755-34475988)
chr3 (4-234)||(45163699-45163935)
chr3 (4-167)||(47235566-47235729)
chr3 (17-231)||(23328354-23328564)
chr3 (26-223)||(25647557-25647753)
chr3 (162-234)||(17550965-17551037)
chr3 (6-234)||(40023573-40023799)
chr3 (115-234)||(9584054-9584173)
chr3 (151-231)||(43012372-43012452)
chr3 (60-223)||(14193846-14194009)
chr3 (60-214)||(37123289-37123442)
chr3 (134-234)||(45398776-45398876)
chr3 (173-234)||(1652887-1652948)
chr3 (26-214)||(14755286-14755471)
chr3 (173-234)||(47945725-47945786)
chr3 (177-234)||(33143949-33144007)
chr3 (175-223)||(30127283-30127332)
chr3 (173-214)||(39021297-39021338)
chr3 (185-234)||(47235729-47235778)
chr3 (150-198)||(31482880-31482928)
chr3 (164-223)||(5556580-5556639)
chr3 (140-223)||(14879421-14879504)
chr3 (173-223)||(823447-823497)
chr3 (37-147)||(4464024-4464132)
chr3 (174-222)||(31424256-31424304)
[»] scaffold0068 (1 HSPs)
scaffold0068 (1-234)||(35773-36006)
[»] scaffold0200 (1 HSPs)
scaffold0200 (44-234)||(19273-19463)
[»] scaffold0050 (1 HSPs)
scaffold0050 (26-220)||(36580-36773)
[»] scaffold0119 (1 HSPs)
scaffold0119 (44-233)||(42140-42329)
[»] scaffold1613 (1 HSPs)
scaffold1613 (17-214)||(1038-1233)
[»] scaffold0063 (1 HSPs)
scaffold0063 (26-223)||(58000-58196)
[»] scaffold0620 (1 HSPs)
scaffold0620 (173-220)||(3849-3896)
[»] scaffold0343 (1 HSPs)
scaffold0343 (200-234)||(5751-5785)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 5389655 - 5389422
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5389655 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctgcaatctttgtt 5389556  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5389555 tgacttgatttgatttttctctggtgtaccgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcgg 5389456  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||| ||||||||||    
T  5389455 gagtcagttctttgactcaagtttgtttttgggc 5389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 41920300 - 41920532
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  41920300 catgccatgtctttcgtcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 41920399  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||| |    
T  41920400 tgacttgatttggtttttctctggtgtact-ggggcgaggggtgccctgctaatttggtactacagtctggtgggccgatcacttttgattcgagatcgg 41920498  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||| ||||||||    
T  41920499 gagtcagttctttgactcaagttggattttgggc 41920532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 31585994 - 31585761
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||| ||| ||||| ||||  ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  31585994 catgccatgtctttcgtcttacatagtgtttgctgatttttggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 31585895  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| |    
T  31585894 tgacttgatttggtttttctctggtgtactgagggtgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcgg 31585795  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  31585794 gagtcagttctttgactcaagttggtttttgggc 31585761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 46693053 - 46692820
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||  |||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||  ||||||| | |||||||||||    
T  46693053 catgccatgtcttttgtcttacatattgtgtgctagttttcggtgggccgattcatttggcttcgagatcgggagtcgaggtctagttgcaatctttgtt 46692954  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||  |||||||||  |||||||||||||||||||||||||| |    
T  46692953 tgacttgatttgatttttctctggtgtaccgggggcgagaggtgccctgctaatttggtgatatagtctggtgggccgatcacttttgattcgagatcgg 46692854  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    |||| ||||||||| |||||||||||||||||||    
T  46692853 gagttagttctttggctcaagttggtttttgggc 46692820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 8 - 234
Target Start/End: Complemental strand, 30686131 - 30685905
Alignment:
Q  8 tgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttg 107  Q
    |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||  |||||| || ||||| ||||||||||||    
T  30686131 tgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctaactgcaatccttgtttgacttg 30686032  T
Q  108 atttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcag 207  Q
    ||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||||||||   ||||||||||||||||||| |||||| ||||||||    
T  30686031 atttggtttttctctggtgtacctggggcgaggggtgccctgctaatttggtactatagtcttgtgggccgatcacttttgatttgagatcgggagtcag 30685932  T
Q  208 ttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||||| ||||||||    
T  30685931 ttctttgactcaagttggcttttgggc 30685905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 24450161 - 24449932
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| ||||||||||| |||| ||||||||  ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  24450161 gccatgtctttcgtcttacatattatgtgttggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtttga 24450062  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    |||| |||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||  ||||||||||||||||||| |||||| | ||    
T  24450061 cttggtttggtttttctctggtgtaccgggggcgaggggtgccctgctattttggtactatagtttggtgggccgatcacttttgatttgagatcggaag 24449962  T
Q  204 tcagttctttgactcaagttggtttttggg 233  Q
    ||||||||||| || |||||||||||||||    
T  24449961 tcagttctttgtcttaagttggtttttggg 24449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 20113755 - 20113523
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  20113755 catgccatgtctttcatcttacatattgtgtgctagttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 20113656  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
     ||  || |||| |||||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||  ||| |||||| ||||||||| ||||| |    
T  20113655 agatatggtttggtttttctcgggtgtaccgggggcgaggggtgccctgctaatttggtattatagtctgctgggacgatcatttttgattcaagatcgg 20113556  T
Q  201 gagtcagttctttgactcaagttggtttttggg 233  Q
    || |||||||||| ||| |||||||||||||||    
T  20113555 gaatcagttctttaacttaagttggtttttggg 20113523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 24684710 - 24684479
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||||| ||||||||||  ||||||||||    
T  24684710 catgccatgtctttcgtcttacatattgtgtgctggttttcggtgg-ccaattcatttggcttcgagatcgggagtcggggtctagctgtaatctttgtt 24684612  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||| ||||||||||| |||||||||||||||||  |||||||| | ||| ||||||  ||||||||||||||| |||||||||| |    
T  24684611 tgacttgatttggtttt-ctctggtgtaccgggggcgaggggtgccctactaatttgattctaaagtctggtgggccgatcacttttaattcgagatcgg 24684513  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
      |||||||||||||||| |||||||||||||||    
T  24684512 atgtcagttctttgactctagttggtttttgggc 24684479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 7857518 - 7857731
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 116  Q
    ||||||||||||||||||||||| |||||||||| ||  ||| |||||||||||||||||  | |||||| | |||| | ||||||||||||| || ||     
T  7857518 tcttacatattgtgtgctggtttccagtgggccgattatttttgcttcgagatcgggagttggtgtctagttgcaat-tatgtttgacttgatatg-ttg 7857615  T
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    ||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||  |||||  |    
T  7857616 ttctctggtgtactgggggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcaactcttttgc 7857715  T
Q  217 tcaagttggtttttgg 232  Q
    | ||||||||||||||    
T  7857716 tgaagttggtttttgg 7857731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 24658783 - 24659009
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || |||||||| |||||||||||  | | |||||||||||  ||| ||||| |||||||||||  | |||||||| ||||| | ||||||||    
T  24658783 catgtctatcgtcttacattttgtgtgctggagtccggtgggccggttatttttgcttcaagatcgggagttggtgtctagctgcaatcat-gtttgact 24658881  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| || | || ||||||||||  |||||| |||||||||| ||| ||||||| ||| ||||||  ||||| |||||||||||||||||||| ||||||    
T  24658882 tgatatggtgtt-ctctggtgtatcgggggcaaggggtgccctgctgatttggttctaaagtctggtgggccaatcacttttgattcgagatcgggagtc 24658980  T
Q  206 agttctttgactcaagttggtttttgggc 234  Q
    || |||||| || ||||||||||||||||    
T  24658981 agctctttggctgaagttggtttttgggc 24659009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 46814656 - 46814472
Alignment:
Q  44 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 143  Q
    ||||||||||  ||| | |||||||||| ||||  | |||||| | ||||| | |||||||||||| || | || ||||||||||| |||||| ||||||    
T  46814656 tgggccggttatttttgattcgagatcgagagttggtgtctagttgcaatcct-gtttgacttgatatggtgtt-ctctggtgtaccgggggcaaggggt 46814559  T
Q  144 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttttt 230  Q
    |||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| | |||| |||||||||||||||    
T  46814558 gccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctttttggctcaagttggttttt 46814472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 5459133 - 5459241
Alignment:
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| ||||||||||||| ||| ||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||| || ||||| ||||||||     
T  5459133 gtaccgggggcgaggggtaccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgggagtcaattatttgattcaagttga 5459232  T
Q  226 tttttgggc 234  Q
    |||||||||    
T  5459233 tttttgggc 5459241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 32864771 - 32864562
Alignment:
Q  26 ttgtgtgctggttttcag-tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctgg 124  Q
    ||||||||| |||||| | ||||||||||  ||| ||||||| ||| |||||| | ||||||||||||||||  |||| ||| ||||| | ||| ||||     
T  32864771 ttgtgtgctagttttccggtgggccggttacttttgcttcgaaatcaggagtcggtgtctagctacaatcttgttttggctttatttggtgtttatctga 32864672  T
Q  125 tgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttg 224  Q
    | ||||| ||| |||||||||||  |  ||||||| ||| || |||  ||||| ||||||||| |||||||||| | |||| |||||||||||||||||     
T  32864671 tctactgagggtgaggggtgcccttccgatttggtcctaaaggctggtgggccaatcacttttaattcgagatcggaagtcggttctttgactcaagttt 32864572  T
Q  225 gtttttgggc 234  Q
    | ||||||||    
T  32864571 ggttttgggc 32864562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 117 - 229
Target Start/End: Complemental strand, 27031958 - 27031846
Alignment:
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    ||||||||||||| |||||  |||||||||| ||| ||||||| ||| |||||   ||||||||||||||||||||||||||  ||||||| |||||| |    
T  27031958 ttctctggtgtaccgggggaaaggggtgccctgctgatttggttctaaagtctagtgggccgatcacttttgattcgagatcgagagtcagctctttggc 27031859  T
Q  217 tcaagttggtttt 229  Q
    |||||||||||||    
T  27031858 tcaagttggtttt 27031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 9313463 - 9313310
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||  | |||||||| |||| |||||||| | ||||||| | ||||||| |||||  ||| | |||||||||||  || |||||||    
T  9313463 gcttcgagatcgggagttggtgtctagctgcaat-tttgtttgccgtgatttggtgtttctctcgtgtatcgggcgtgaggggtgcccttctgatttggt 9313365  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
     ||| |||||   |||| ||||||||||||||||||||| |||||||||||||||    
T  9313364 cctaaagtctagtgggctgatcacttttgattcgagatcgggagtcagttctttg 9313310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 38544954 - 38544759
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgattt-gatt 115  Q
    |||||||||||||||||||| ||  ||||||||| ||  ||| |||||||||| ||||||  | |||||||| ||||||| |||||| ||||||| | |     
T  38544954 tcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatctt-gtttga-ttgattttggtg 38544857  T
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||||||| ||||||   ||||||| |||  || |||||||  |  ||||||  ||||||||| |||||||||||||||| |||||||||||||||    
T  38544856 tttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 38544759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 34774779 - 34774925
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    ||||||||| |||||||| | ||||| |||||||||| ||||| ||||||||||| ||||||| || ||| ||||| ||| |||||||  || |||||||    
T  34774779 gcttcgagaacgggagtcggtgtctaactacaatctt-gtttggcttgatttgatgtttctctagtatac-gggggtgagtggtgcccttctgatttggt 34774876  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagtt 209  Q
     |||  |||||  || |||||||||||||| |||||||| ||||||||||    
T  34774877 cctaacgtctggtggaccgatcacttttga-tcgagatcgggagtcagtt 34774925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 223
Target Start/End: Original strand, 17033571 - 17033655
Alignment:
Q  139 ggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||  || ||||||| ||||||||||  ||||||||||||||||| |||||||| |||||||||||||||  |||||||    
T  17033571 ggggtgcccttctgatttggtcctatagtctggtgggccgatcacttttgaatcgagatcgggagtcagttctttggttcaagtt 17033655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 27102210 - 27102271
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||| | ||||||||    
T  27102210 gggccgatcacttttgattcgagatcgggagtcagttctttggatcaagtttggttttgggc 27102271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 19598655 - 19598715
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  19598655 gggccgatcgcttttgattcgagatcgagagtcagttctttgactcaagtttgattttggg 19598715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 10785540 - 10785489
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtc 77  Q
    |||||||||||||| | ||||||||||| |||| ||||||||||||||||||    
T  10785540 ttgtgtgctggtttccggtgggccggttaattttgcttcgagatcgggagtc 10785489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 4651742 - 4651834
Alignment:
Q  116 tttctctggtgtactgggggcgaggggtgcccagct-aatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 208  Q
    |||||||||||||| |||||  ||||||||||  || |||||| | | | ||||||  |||||||||||||||||||||||||| |||||||||    
T  4651742 tttctctggtgtaccgggggtaaggggtgcccttctgaatttgttccga-agtctggggggccgatcacttttgattcgagatcgggagtcagt 4651834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 50589422 - 50589365
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcggga 74  Q
    |||||||||||||||||||| ||   ||||||||||| |||| |||||||||||||||    
T  50589422 tcttacatattgtgtgctggattctggtgggccggttaattttgcttcgagatcggga 50589365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 27905434 - 27905473
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttga 215  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  27905434 ccgatcacttttgattcgagatcagaagttagttctttga 27905473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 6583399 - 6583337
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagct 88  Q
    ||||||| ||||| || |||||||||||  ||| |||||||||||||||||| | ||||||||    
T  6583399 ttgtgtgttggttgtcggtgggccggttacttttgcttcgagatcgggagtcggtgtctagct 6583337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 15840974 - 15840924
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||| ||||||||||||||||||||| ||||||||||  |||| |||||||    
T  15840974 gggctgatcacttttgattcgagatcgggagtcagtttcttgattcaagtt 15840924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 6583298 - 6583237
Alignment:
Q  153 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||| ||| ||||||  || ||||||||||||||||||||||| | ||||| |||||||    
T  6583298 atttggtcctaaagtctggtggaccgatcacttttgattcgagatcggcagtcaattctttg 6583237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 30655579 - 30655615
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagtt 209  Q
    ||||||||| |||||||||||||||| ||||||||||    
T  30655579 gggccgatcgcttttgattcgagatcgggagtcagtt 30655615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 38306108 - 38306341
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||    
T  38306108 catgccatgtctttcatcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagaacgggagtcggggtctagctgcaatctttgtt 38306207  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||  |    
T  38306208 tgacttgatttggtttttctctggtgtacagggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagattgg 38306307  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  38306308 gagtcagttctttgactcaagttggtttttgggc 38306341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 47326119 - 47325886
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  47326119 catgccatgtctttcttcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcggggtctagcagcaatctttgtt 47326020  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    | |||||||||| |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||  ||||||||| ||||||||| |||||| |    
T  47326019 taacttgatttggtttttctctggtgtaccgggggcgaggggtgccttgctaatttggtactatagtctggtgggccgatcgcttttgatttgagatcgg 47325920  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||| ||||||||||||||||||||||||||    
T  47325919 gagtcagctctttgactcaagttggtttttgggc 47325886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 3419890 - 3419657
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  3419890 catgccatgtctttcgtcttacatattgtgtgctggttttcggcgagccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 3419791  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||| ||| ||||||||||||||||| | ||||||||||||| ||| ||  |||| ||||||||||||||||||||| |    
T  3419790 tgacttgatttggtttttctctggtataccgggggcgaggggtgccctgttaatttggtactaaagtgtggtgggctgatcacttttgattcgagatcgg 3419691  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||| ||||||||||||||||||||||||||    
T  3419690 gagtcagctctttgactcaagttggtttttgggc 3419657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 10244031 - 10244260
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||||| |||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| || ||||| | |||||||||||    
T  10244031 catgccatgt-tttcgtcttacatattgtgtgctggttttcggttggctggttcatttggcttcgagatcgggagtcgggatctagttgcaatctttgtt 10244129  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||| | |||||| |||||||||||||||| ||||| ||||||||||| ||||||||||| ||||| ||||  |||||||||||||||||||||||||| |    
T  10244130 tga-tagatttggtttttctctggtgtaccgggggagaggggtgccctgctaatttggtgctataatctggtgggccgatcacttttgattcgagatcgg 10244228  T
Q  201 gagtcagttctttgactcaagttggtttttgg 232  Q
    ||||||||||||||||||||||| ||||||||    
T  10244229 gagtcagttctttgactcaagttagtttttgg 10244260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 5860519 - 5860289
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  |||||| || |||||||||||||     
T  5860519 gccatgtctttcgtcttacatattgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcgaggtctatctgcaatctttgtttgg 5860420  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    ||  ||||| |||||||||  ||||| ||||||||||||||||| |||||||||||||||||||| |  ||||| ||| |||||||||||||||| ||||    
T  5860419 ctgaatttggtttttctctactgtaccgggggcgaggggtgccctgctaatttggtactatagtccggtgggcctatcgcttttgattcgagatcgggag 5860320  T
Q  204 tcagttctttgactcaagttggtttttgggc 234  Q
    ||| ||||||||| |||||||||||||||||    
T  5860319 tcaattctttgacgcaagttggtttttgggc 5860289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 3866964 - 3867196
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||| ||||||| ||||||||||||||| ||||||| | ||||| || ||  ||| |||||||||||| ||||| ||||||||||||||||||||||    
T  3866964 catgccacgtctttcgtcttacatattgtgtcctggttt-cggtgggtcgattacttttgcttcgagatcgagagtcggggtctagctacaatctttgtt 3867062  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||||| || |||||||||||||||| | |||||| ||||| || ||||||||||||||| | | ||  |||| ||||||||||||||||||| | |    
T  3867063 tgacttgatatggtttttctctggtgtaccgagggcgaagggtggcctgctaatttggtactaaaatatggtgggctgatcacttttgattcgagaccgg 3867162  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  3867163 gagtcagttctttgactcaagttggtttttgggc 3867196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 37794865 - 37795069
Alignment:
Q  19 ttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattttt 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||            
T  37794865 ttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagttggggtctagctgcaatctttgtttgacttgatt-------- 37794956  T
Q  119 ctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactc 218  Q
       |||||||| ||||||||||||||||| |||||||||||| |||||| ||  |||||| ||| ||||||||||||||| |||||||||||||||| ||    
T  37794957 ---tggtgtaccgggggcgaggggtgccctgctaatttggtaatatagtatggtgggccgttcagttttgattcgagatcgggagtcagttctttgagtc 37795053  T
Q  219 aagttggtttttgggc 234  Q
    ||||||||||||||||    
T  37795054 aagttggtttttgggc 37795069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33434957 - 33435190
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||| ||| | |||||||||||||| |||||| | |||||||| ||  ||| ||||||||||||| ||||||||||||| |  ||||||||||    
T  33434957 catgccatgtcattcgtattacatattgtgtgttggtttccggtgggccgattacttttgcttcgagatcggtagtccgggtctagttgtaatctttgtt 33435056  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |  ||||||||| |||| ||||||||||| ||||||||||||||||| | ||||||||||||| ||||||  | | |||||||||||||||||||||| |    
T  33435057 tagcttgatttggtttt-ctctggtgtaccgggggcgaggggtgccctgttaatttggtactaaagtctggtgagacgatcacttttgattcgagatcgg 33435155  T
Q  201 gagtcagttctttgactcaagttggtttttgggca 235  Q
    |||||||||||||| |||||||| |||| ||||||    
T  33435156 gagtcagttctttgtctcaagttcgtttgtgggca 33435190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 65 - 231
Target Start/End: Complemental strand, 41089918 - 41089752
Alignment:
Q  65 gagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactat 164  Q
    ||||||| ||||  |||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||| | |||||||||||||||     
T  41089918 gagatcgagagttggggtctagctacaatctttgtttgacttgatttggtttttctctggtgtatcgggggcgaggggtgctctgctaatttggtactaa 41089819  T
Q  165 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 231  Q
    ||||||  || ||||||||||||||||||||||  |||||||| |||||||||||||||||||||||    
T  41089818 agtctggtggaccgatcacttttgattcgagattgggagtcagctctttgactcaagttggtttttg 41089752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 25160662 - 25160895
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||  ||||||||||||||| ||||||||| |||||  | |||||||||||| | ||||||||||| |||||||| | | || ||||||    
T  25160662 catgccatgtcttttgtcttacatattgtgtactggttttcggtgggatgattcatttggctttgggatcgggagtcggggtctagttgctatttttgtt 25160761  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||| |||| |||||||||||||||| | ||||||||||||||| ||||||||||| ||||||||||  || ||||| ||||||||||||||||| |    
T  25160762 tgacttggtttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggttctatagtctggtggaccgattacttttgattcgagatcgg 25160861  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
     |||||  ||||  | | ||||||||||||||||    
T  25160862 aagtcaaatcttgaaattaagttggtttttgggc 25160895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 35746031 - 35745828
Alignment:
Q  29 tgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgta 128  Q
    |||| |||||||| |||| ||||||  ||| ||||||||||||| |||  | | |||||  ||||||| |||||||||||| || | || ||||| ||||    
T  35746031 tgtgttggttttcggtggaccggttacttttgcttcgagatcggaagttggtgactagcagcaatctt-gtttgacttgatatggtgtt-ctctgatgta 35745934  T
Q  129 ctgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttt 228  Q
    | |||||||||||||||||  ||||||| || ||| ||||||| |||| ||||||||||||||||||||| | |||||  |||||| |||||||||||||    
T  35745933 ccgggggcgaggggtgccctactaattttgttctaaagtctgatgggctgatcacttttgattcgagatcggaagtcatctctttggctcaagttggttt 35745834  T
Q  229 ttgggc 234  Q
    ||||||    
T  35745833 ttgggc 35745828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 34389815 - 34390042
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || || |||||||||||||||||| |    |||||| |||  ||| ||||||||||| | |||  | |||||| | ||||| |  |||||||    
T  34389815 catgtctatcgtcgtacatattgtgtgctggtgtctgatgggccagttatttttgcttcgagatcagaagttggtgtctagttgcaatcatgttttgact 34389914  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| ||  | ||||||||||||||||||| |||| |||||| ||| |||||||  || ||||||  |||||||||||||||||||||||||| ||||||    
T  34389915 tgatatg-gtgttctctggtgtactgggggtgaggagtgccctgctgatttggttttaaagtctggtgggccgatcacttttgattcgagatcgggagtc 34390013  T
Q  206 agttctttgactcaagttggtttttgggc 234  Q
    || |||||| || ||||||||||||||||    
T  34390014 agctctttggcttaagttggtttttgggc 34390042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 6716953 - 6716748
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 116  Q
    |||||| | ||| |||||||||||| ||||||| |||  |||  ||| ||||||||||||| | |||||||| ||||| || |||| ||||||||||| |    
T  6716953 tcttactttttgcgtgctggttttcggtgggccagttacttttactttgagatcgggagtcggtgtctagctgcaatc-ttatttggcttgatttgatgt 6716855  T
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    ||||||||||||| | | | |||||||||||  || ||||  |  || ||||||   ||||||||||||||||||||||||| ||||||||||||||| |    
T  6716854 ttctctggtgtaccgagagtgaggggtgcccttctgatttaatcataaagtctggttggccgatcacttttgattcgagatcgggagtcagttctttggc 6716755  T
Q  217 tcaagtt 223  Q
    |||||||    
T  6716754 tcaagtt 6716748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 6584877 - 6584989
Alignment:
Q  122 tggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaag 221  Q
    |||||||| || |||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| |||||| || |||    
T  6584877 tggtgtaccggaggcgaggggtgccctgctgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggcttaag 6584976  T
Q  222 ttggtttttgggc 234  Q
    |||||||||||||    
T  6584977 ttggtttttgggc 6584989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 8745026 - 8745233
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||||||||| |||||||||||  ||| ||||||||||||| || | | |||||||| |||| || |||||   |||| || | ||||||||||    
T  8745026 ttgtgtgctggttttcggtgggccggttacttttgcttcgagatcggaaggcggtgtctagctgcaatgtt-gtttggtgtgatctggtgtttctctggt 8745124  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    | || | ||| |||||||| ||  || ||||||| ||| | ||||  |||||||||||||||||||||||||| ||| ||||||| |||  ||||||| |    
T  8745125 gcaccgagggtgaggggtggccttctgatttggtcctaaattctggtgggccgatcacttttgattcgagatcgggattcagttcgttggatcaagtttg 8745224  T
Q  226 tttttgggc 234  Q
     ||||||||    
T  8745225 gttttgggc 8745233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 42533460 - 42533264
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||||| | |  ||||||||||  ||| |||||||||||||||||| | ||| |||| || ||||  |||| |  ||| || | ||||||||||    
T  42533460 ttgtgtgctggtctccgatgggccggttacttttgcttcgagatcgggagtctgtgtccagctgcattctta-tttggcgcgatgtggtgtttctctggt 42533362  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    | |  ||||| |||||||||||  || ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||| | ||||| || |||||    
T  42533361 gcatcgggggtgaggggtgccctcctgatttggtcctaaagtctggtgggctgatcacttttgattcgagatcgggagtcaatcctttggcttaagtt 42533264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 44755500 - 44755663
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||||||  | |||||||  || |||| |||| ||| ||||||||| | |||||||| | || |||||||||| ||||||| | ||||||||||    
T  44755500 ttgtgtgctggttagcggtgggcccattaattttgctttgaggtcgggagtcggtgtctagctgctat-tttgtttgacgtgatttggtgtttctctggt 44755598  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgatt 191  Q
    |||| | ||  |||||||||||  || ||||||| ||| ||||||  |||||||||||||||||||    
T  44755599 gtaccgtggt-gaggggtgcccttctgatttggtcctaaagtctggtgggccgatcacttttgatt 44755663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Complemental strand, 44353623 - 44353565
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||    
T  44353623 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggc 44353565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 16954527 - 16954722
Alignment:
Q  27 tgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtg 126  Q
    ||||||||||||| |  ||||||| ||  ||| ||||| |||||| ||||  | |||||||| ||||||| ||| | |  |||||| | |||||||||||    
T  16954527 tgtgtgctggtttccgatgggccgattacttttgcttccagatcgagagttggtgtctagctgcaatcttggttgg-cgcgatttggtctttctctggtg 16954625  T
Q  127 tactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||   | || |||||||||||  || ||||||| ||| ||||||   | ||||||||||||| |||||||||   ||||||||||||||||||||||    
T  16954626 tatcagaggtgaggggtgcccttctgatttggtcctaaagtctggttgaccgatcacttttgtttcgagatcgaaagtcagttctttgactcaagtt 16954722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 1320701 - 1320863
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||  | ||||||||  ||| |||||||| |   ||||| | |||||||| ||||  ||||| |||||||||||   | |||||||    
T  1320701 gcttcgagatcgggagttggtgtctagctgtaat-tttgtttggcgcaatttggtgtttctctgatgtatcgggggtgaggggtgcccttttgatttggt 1320799  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
      || ||||||  |||||||||||||||||||| | ||| | ||||||||||||| ||||||||    
T  1320800 cataaagtctggtgggccgatcacttttgattcaaaatcggaagtcagttctttggctcaagtt 1320863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 13311849 - 13311908
Alignment:
Q  164 tagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||  |||||||||||||||||||||||||| |||||||||||||||  |||||||    
T  13311849 tagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtt 13311908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 221
Target Start/End: Original strand, 3478329 - 3478419
Alignment:
Q  131 gggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaag 221  Q
    ||||| |||||||||||  ||  |||||| ||| ||| ||  |||||||||||||||||||||||||| ||||| ||||||||| ||||||    
T  3478329 gggggtgaggggtgcccttctgttttggtcctaaagtttggtgggccgatcacttttgattcgagatcgggagttagttctttggctcaag 3478419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 223
Target Start/End: Complemental strand, 24324927 - 24324810
Alignment:
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    ||||||| | ||||| |||||||| ||||   ||||||||||  || |||||||  || ||| ||  |||||||||| ||||||||||||||| ||||||    
T  24324927 tgatttggtgtttctttggtgtaccggggtttaggggtgcccttctgatttggtcttaaagtttggtgggccgatcaattttgattcgagatcgggagtc 24324828  T
Q  206 agttctttgactcaagtt 223  Q
    | ||||||| ||||||||    
T  24324827 aattctttggctcaagtt 24324810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 232
Target Start/End: Original strand, 12480905 - 12480965
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgg 232  Q
    ||||||||| |||||||||||||||| |||||||||||||||  ||||| |||||||||||    
T  12480905 gggccgatcgcttttgattcgagatcgggagtcagttctttggttcaagtttggtttttgg 12480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 223
Target Start/End: Complemental strand, 16829064 - 16828948
Alignment:
Q  107 gatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtca 206  Q
    |||||| | ||||||| |||||   |||| |||||||||||  || ||||||| ||| ||||||   ||| ||||||||||| |||||||||   |||||    
T  16829064 gatttggtgtttctctagtgtatcaggggtgaggggtgcccttctgatttggtcctaaagtctggttggctgatcacttttgtttcgagatcgaaagtca 16828965  T
Q  207 gttctttgactcaagtt 223  Q
    |||||||||||||||||    
T  16828964 gttctttgactcaagtt 16828948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 38485518 - 38485610
Alignment:
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 208  Q
    ||||||||||| ||||||||  ||||||||||  || | || || ||  ||||||  |||||||||||||||||||||||||| |||||||||    
T  38485518 tttctctggtggactgggggtaaggggtgcccttctgaatttgttctgaagtctggtgggccgatcacttttgattcgagatcgggagtcagt 38485610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 212
Target Start/End: Complemental strand, 9428186 - 9428128
Alignment:
Q  154 tttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctt 212  Q
    |||||| || |||||||  | |||||||||||||||||||||||||| |||||||||||    
T  9428186 tttggtcctgtagtctggtgagccgatcacttttgattcgagatcagaagtcagttctt 9428128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 11379335 - 11379139
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||||||| ||  |||||| |||||  ||| | ||| |||||||||||  | |||||||||||||||| ||||| ||   |  | | ||||||||||    
T  11379335 ttgtgtgctggattctagtgggtcggttatttttgattcaagatcgggagttggtgtctagctacaatctt-gtttggctgactacggtgtttctctggt 11379237  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    | || | |||   |||||||||  ||||||||||  | |||||||  | ||||||| |||||||||||||||| ||||||||| |||||  |||||||    
T  11379236 ggaccgagggtttggggtgcccttctaatttggtcatgtagtctggtgagccgatcgcttttgattcgagatcgggagtcagtactttggttcaagtt 11379139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 9349768 - 9349806
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttct 211  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  9349768 gggccgatcacttttgattcgagatcgggagtcaattct 9349806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 47457092 - 47457034
Alignment:
Q  165 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||| || |||||| ||||||||| |||||  ||||||||||||||| ||||||||    
T  47457092 agtctgatggaccgatcgcttttgatttgagattgggagtcagttctttggctcaagtt 47457034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 46133338 - 46133278
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgggc 234  Q
    ||||||| ||||||||| |||||| |||||||||||| ||  ||||| |||||||||||||    
T  46133338 gccgatcgcttttgatttgagatcgggagtcagttctctggttcaagtttggtttttgggc 46133278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 24995628 - 24995396
Alignment:
Q  2 atgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgttt 101  Q
    |||| |||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  24995628 atgctatgtttttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgttt 24995529  T
Q  102 gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagg 201  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||||||||  |||||||||||||||||||||||||| ||    
T  24995528 gacttgatttggtttttctctggtgtactgggggcgaggggtgtcttgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcggg 24995429  T
Q  202 agtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||||||||||||||||||||    
T  24995428 agtcagttctttgactcaagttggtttttgggc 24995396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 9519346 - 9519579
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  9519346 catgccatttctttcgtcttacatattgtgtgctggttttcagtaggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatctttgtt 9519445  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||   |||||||||| ||||||||||||||| |    
T  9519446 tgacttgatttggtttttctctggtgtaccgggggtgaggggtgccctgctaatttggtactatagtctagtgggccgatcagttttgattcgagatcgg 9519545  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  9519546 gagtcagttctttgactcaagttggtttttgggc 9519579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34389239 - 34389006
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  34389239 catgccatgtctttcgtcttacatattgtgtgctggttttcgataggccggttcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtt 34389140  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||     
T  34389139 tgacttgatttggtttttctctggtgtaccaggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcaa 34389040  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  34389039 gagtcagttctttgactcaagttggtttttgggc 34389006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 32066529 - 32066296
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||||| | |||||||||||    
T  32066529 catgccatgtctttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggctttgagatcgggattcggggtctagttgcaatctttgtt 32066430  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||  |||||||||||||||||||||| ||| |    
T  32066429 tgacttgatttggtttttctctagtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtgggccgatcacttttgattcgaaatcgg 32066330  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||| |||||||||| |||||||||||||||    
T  32066329 gagtcagctctttgactccagttggtttttgggc 32066296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 37987092 - 37986862
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| | || ||||| ||    
T  37987092 catgccatgtctttcgtcttacatattgtgtgctggttttcggtgggccggttcatttggcttcgagatcggtagtcggggtctagttgcattctttatt 37986993  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||  |||||||||  ||||| |||| ||||||||||||||| |    
T  37986992 tgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgttatagtctggtgggccaatcatttttgattcgagatcgg 37986893  T
Q  201 gagtcagttctttgactcaagttggtttttg 231  Q
    |||||||||||||||||||||||||||||||    
T  37986892 gagtcagttctttgactcaagttggtttttg 37986862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 36630684 - 36630917
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| |  ||||||||| |||||||||||    
T  36630684 catgccatgtctttcgtcttacatattgtgtgttggttttcggtaggccggttcatttggcttcgagatcgggagacgaggtctagctgcaatctttgtt 36630783  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||| ||| ||||||  ||||||||||||||| |||||||||| |    
T  36630784 tgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggttctaaagtctggtgggccgatcacttttaattcgagatcgg 36630883  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    | |||||||||||||||| |||| ||||||||||    
T  36630884 gtgtcagttctttgactctagtttgtttttgggc 36630917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 102 - 233
Target Start/End: Complemental strand, 31207494 - 31207364
Alignment:
Q  102 gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagg 201  Q
    ||||||||||| ||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||| ||    
T  31207494 gacttgatttggtttttctctggtgtaccaggggcgaggg-tgccctgctaatttggtactatagtctggtgggccgatcacttttgattcgagatcggg 31207396  T
Q  202 agtcagttctttgactcaagttggtttttggg 233  Q
    |||||||||||||||||||||||| |||||||    
T  31207395 agtcagttctttgactcaagttggattttggg 31207364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 31210425 - 31210319
Alignment:
Q  1 catgccatgtctttcatcttacatatt-gtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgt 99  Q
    ||||||||||||||| ||||||||||| ||| |||||||||| |||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||    
T  31210425 catgccatgtctttcgtcttacatatttgtgcgctggttttcggtgggccggttcatttggcttcaagatcgggagtcagggtctagctgcaatctttgt 31210326  T
Q  100 ttgactt 106  Q
    |||||||    
T  31210325 ttgactt 31210319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 10248761 - 10248565
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| | ||||||| |||  ||| |||||||||||||||||| | |||||||| |||| |||||||| ||||||||| | ||||||||||    
T  10248761 ttgtgtggtggtttccggtgggccagttacttttgcttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcttgatttggtgtttctctggt 10248663  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||| ||||| |||||||| ||  ||||||| || ||| | | ||  || ||||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  10248662 gtaccgggggtgaggggtgtccttctaattttgtcctaaaatttggtggaccgatcacttttgattcaagatcgggagtcagttctttggctcaagtt 10248565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 15821606 - 15821380
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || |||||||||||||||| |||| |   |||||||| ||  |||  ||| |||||||| |||  | | ||||||||||||  |||||| ||    
T  15821606 catgtctatcgtcttacatattgtgtgttggtatctggtgggccgattattttttctttgagatcggaagttggtgcctagctacaatc-ctgtttggct 15821508  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| ||  | ||||||||||||| | ||||||||||||||| ||| ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||    
T  15821507 tgatatg-gtgttctctggtgtaccgagggcgaggggtgccctgctgatttggttctaaagtctggtgggctgatcacttttgattcgagatcgggagtc 15821409  T
Q  206 agttctttgactcaagttggtttttgggc 234  Q
    || ||||||||| | ||||||||||||||    
T  15821408 agctctttgacttatgttggtttttgggc 15821380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 232
Target Start/End: Complemental strand, 17657209 - 17657005
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| |  |||||||||| |||| |||||||||||||||||| | | ||||||||||||||  |||| | ||||||| | |||||||| |    
T  17657209 ttgtgtgttggtttccgatgggccggttaattttgcttcgagatcgggagtcggtggctagctacaatctta-tttggcgtgatttggtgtttctctgat 17657111  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| |||   |||||||||||  |||| ||||  ||| ||| ||  ||| |||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  17657110 gtaccgggat-gaggggtgcccttctaagttggacctaaagtatggtgggtcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttg 17657012  T
Q  226 tttttgg 232  Q
     ||||||    
T  17657011 gttttgg 17657005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 230
Target Start/End: Complemental strand, 16457562 - 16457466
Alignment:
Q  133 gggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttttt 230  Q
    |||||||||||| || ||||||||| ||||||||| ||  || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16457562 gggcgaggggtgtcctgctaatttgatactatagtttggtgg-ccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggttttt 16457466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 12898378 - 12898275
Alignment:
Q  131 gggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggttttt 230  Q
    |||||||||||||||||   |||||||||| |||||||||  |  ||||||||||||||||||||||| |||||||||| | | |||||||||||||||     
T  12898378 gggggcgaggggtgccctattaatttggtaatatagtctggtgacccgatcacttttgattcgagatccggagtcagttatctaactcaagttggttttg 12898279  T
Q  231 gggc 234  Q
    ||||    
T  12898278 gggc 12898275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 20138448 - 20138506
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||| |||||| |||||||||||||||||| | ||||||||||||||    
T  20138448 ccgatcacttttgatttgagatcgggagtcagttctttgacttatgttggtttttgggc 20138506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 41893474 - 41893402
Alignment:
Q  161 ctatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||  ||||| | |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||    
T  41893474 ctatagtctggtgggccaaccacttttgattcgagatcgggagtcagttctttgtctcaagtt-gtttttgggc 41893402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 30236247 - 30236129
Alignment:
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttga 215  Q
    ||||||||||| || |||||  ||||||||||  || |||||||  |  ||||||  ||| ||||| |||||||||||||||| |||||||||||||||     
T  30236247 tttctctggtggaccgggggtaaggggtgcccttctgatttggttttgaagtctggtgggacgatcgcttttgattcgagatcgggagtcagttctttgg 30236148  T
Q  216 ctcaagttggtttttgggc 234  Q
     ||||||| | ||||||||    
T  30236147 ttcaagtttggttttgggc 30236129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 15906705 - 15906766
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||| |||||||||||||| |||||||||||||||  ||||||| | ||||||||    
T  15906705 gggccgatcacatttgattcgagatcgggagtcagttctttggttcaagtttggttttgggc 15906766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 32945765 - 32945704
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||| ||||||||||||||||||||| ||||||| |||||||| ||||||| | ||||||||    
T  32945765 gggctgatcacttttgattcgagatcgggagtcaattctttgattcaagtttggttttgggc 32945704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Original strand, 33967345 - 33967375
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggag 203  Q
    |||||||||||||||||||||||||||||||    
T  33967345 gggccgatcacttttgattcgagatcaggag 33967375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 40531243 - 40531281
Alignment:
Q  165 agtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    ||||||| |||||||||||||||||||||||||| ||||    
T  40531243 agtctgatgggccgatcacttttgattcgagatcgggag 40531281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 3679471 - 3679515
Alignment:
Q  179 atcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||||||||||||| |||||| || |||||| |||||||    
T  3679471 atcacttttgattcgagatcgggagtcggtgctttgattcaagtt 3679515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 12883497 - 12883533
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagtt 209  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  12883497 gggccgatcgcttttgattcgagatcaggagttagtt 12883533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 39339099 - 39338866
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  39339099 catgccatgtctttcgtcttacatattgtgtgctggttttcggtgggccagttcatttggcttcgagatcgggagtcggggtctagctgcaatatttgtt 39339000  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||| |    
T  39338999 tgacttgatttggtttttctttggtgtaccgggggcgaggggtgccctgctaatttggtactatagtctggtgggccgatcgcttttgattcgagatcgg 39338900  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  39338899 gagtcagttctttgactcaagttggtttttgggc 39338866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 10523944 - 10524181
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| || ||||| | |||||||||||    
T  10523944 catgccatgtctttcatcttacatattgtgtgctggttttcggtggaccggttcatttggcttcgagatcgggagtcgggctctagttgcaatctttgtt 10524043  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||| || |||||||| ||||||||||  |||||||||||||||||||||||||| |    
T  10524044 tgacttgatttggtttttctctggtctactgggggcgagaggtgccctgccaatttggtgctatagtctggtgggccgatcacttttgattcgagatcgg 10524143  T
Q  201 gagtca----gttctttgactcaagttggtttttgggc 234  Q
    ||||||     |||||||||||||||||||||||||||    
T  10524144 gagtcaatatattctttgactcaagttggtttttgggc 10524181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 7874145 - 7874371
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || ||||| ||||||||||||||| | | |||||||||||  ||| |||||||||||||||||  | |||||||| ||||| | | ||||||    
T  7874145 catgtctatcgtcttaaatattgtgtgctggtgtccggtgggccggttttttttgcttcgagatcgggagttggtgtctagctgcaatcct-gcttgact 7874243  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| || | || |||| |||||| | |||||| |||||||| ||| ||||||| ||| ||||||  ||| |||||||||||||||||||||| ||||||    
T  7874244 tgatatggtgtt-ctctagtgtaccgagggcgatgggtgccctgctgatttggttctaaagtctggtgggtcgatcacttttgattcgagatcgggagtc 7874342  T
Q  206 agttctttgactcaagttggtttttgggc 234  Q
    || ||||||||||||||||||||||||||    
T  7874343 agctctttgactcaagttggtttttgggc 7874371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 17105264 - 17105456
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    |||||||||||||||||||||||||||||||||| | ||||| |||||  ||| |||| |||||  |||||| | |||||||| ||| | ||||||||||    
T  17105264 catgtctttcatcttacatattgtgtgctggtttccggtgggtcggttacttttgcttggagataaggagtcggcgtctagctgcaa-ccttgtttgact 17105362  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcac-ttttgattcgagatc 198  Q
    | ||| | | ||||| ||||||||  |||| |||||||||||  || ||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  17105363 taattaggtgtttctttggtgtaccaggggtgaggggtgccctactgatttggtactgaagtctgatgggccgatcactttttgattcgagatc 17105456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 387151 - 387250
Alignment:
Q  132 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 231  Q
    |||||||||||||||| ||||||||||||||| ||||||  |||| |||||||||||||| |||||| ||||||| ||||||||||||||||||||||||    
T  387151 ggggcgaggggtgccctgctaatttggtactaaagtctggtgggctgatcacttttgatttgagatcgggagtcaattctttgactcaagttggtttttg 387250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 233
Target Start/End: Original strand, 1269373 - 1269562
Alignment:
Q  44 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 143  Q
    |||| ||||| |||| ||||||||||||||||||   |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  1269373 tgggtcggttaattttgcttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 1269472  T
Q  144 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    ||||  || |||| || ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||    
T  1269473 gcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 1269562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 213
Target Start/End: Complemental strand, 14106734 - 14106546
Alignment:
Q  24 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 123  Q
    ||||||||| |||||| | |||||||||||  ||| |||||||||  ||||||| | | |||||| ||||| | ||||||||||||||| | || ||||     
T  14106734 tattgtgtgttggtttccggtgggccggttacttttgcttcgagacagggagtcggtgactagctgcaatcct-gtttgacttgatttggtgttcctctc 14106636  T
Q  124 gtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
     |||||   ||||||||||||||| ||| ||||||| ||| ||||||  |||||||||||||||||||| ||||| |||||||| |||||    
T  14106635 atgtacccagggcgaggggtgccctgctgatttggtcctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagctcttt 14106546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 14405162 - 14405278
Alignment:
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    ||||||||||||| |||||||||||||||   | | ||||||| ||| ||||||  |||||||||||||||||||||||||| |||||||| |||||| |    
T  14405162 ttctctggtgtaccgggggcgaggggtgctt-gatgatttggttctaaagtctggtgggccgatcacttttgattcgagatcgggagtcagctctttggc 14405260  T
Q  217 tcaagttggtttttgggc 234  Q
    ||||||||||||||||||    
T  14405261 tcaagttggtttttgggc 14405278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 13337285 - 13337352
Alignment:
Q  165 agtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    ||||||| |||||||||||||||||||||| ||| | |||||||||||||||||||||| | ||||||    
T  13337285 agtctgatgggccgatcacttttgattcgaaatcggaagtcagttctttgactcaagttaggttttgg 13337352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 37770849 - 37770663
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||| |||||||| || |||||||||||  ||| |||||||||||||||||  | |||||||  |||| |   |||| |  |||||  | ||||||||||    
T  37770849 ttgtttgctggttatcggtgggccggttacttttgcttcgagatcgggagttggtgtctagcagcaat-tcgatttggcgcgatttagtgtttctctggt 37770751  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
    |||| | ||| |||||||||||| || ||||||| |||  || ||  ||||||||||||||||||||  |||||||||||| ||||||    
T  37770750 gtaccgagggtgaggggtgcccatctgatttggtcctaaggtttggtgggccgatcacttttgattctggatcaggagtcaattcttt 37770663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 4471942 - 4472003
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||| | |||||||||||||| |||||||||||||||| ||||||| ||||||||||    
T  4471942 gggccgatcgcctttgattcgagatcgggagtcagttctttgattcaagtttgtttttgggc 4472003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 22885195 - 22885135
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||| | |||||||    
T  22885195 gggccgatcacttttgattcgagatcgggagtcagttctttggttcaagtttggttttggg 22885135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 16960001 - 16960062
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||| ||||||||||||||||  |||||||||||||| |||||||| | ||||||||    
T  16960001 gggccgatcgcttttgattcgagatcgagagtcagttctttggctcaagtttggttttgggc 16960062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 34230220 - 34230281
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||| |||| ||||||||||||||||||||||||||  ||||||| | ||||||||    
T  34230220 gggccgatcattttttattcgagatcaggagtcagttctttggatcaagtttgattttgggc 34230281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 7695985 - 7696043
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||| | | ||||||||||||||| |||||||| | ||||||||    
T  7695985 ccgatcacttttgattcgataccgggagtcagttctttggctcaagttaggttttgggc 7696043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 41086994 - 41086823
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||| ||||| | |||| ||| ||  ||| |||| |||||||||| || | ||| ||||||||| |||||||| | ||||||| | || |||||||    
T  41086994 ttgtgtgcaggtttccggtggaccgattacttttgctttgagatcgggaatcggtgtccagctacaat-tttgtttggcgtgatttggtgtt-ctctggt 41086897  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||  |||| ||||| |||||  || |||||||  |||||||||  ||| | ||||||||||||||||||||||    
T  41086896 gtaccaggggtgaggg-tgcccttctgatttggtcatatagtctggtgggtcaatcacttttgattcgagatcag 41086823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 2062908 - 2062969
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||  |||||||||||||||| |||||||| |||||| |||||||| | ||||||||    
T  2062908 gggccgattgcttttgattcgagatcgggagtcagctctttggctcaagtttggttttgggc 2062969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 10173640 - 10173579
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||||||||||||| | ||| |||| |||| |||||||| | ||||||||    
T  10173640 gggccgatcacttttgattcgagatcggaagtaagttatttggctcaagtttggttttgggc 10173579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 15126472 - 15126411
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||| ||||||||||||||| |||||| |||||||| |||| ||| | ||||||||    
T  15126472 gggccgatcatttttgattcgagatcgggagtcggttctttggctcatgtttggttttgggc 15126411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 5254275 - 5254336
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||| ||| |||||| |||||| | ||||||  ||||||||||||| ||||    
T  5254275 gggccgatcacttttaatttgagatcgggagtctgctctttggttcaagttggttttcgggc 5254336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 16952443 - 16952386
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  16952443 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 16952386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 17023108 - 17023051
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17023108 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17023051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 17060414 - 17060357
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17060414 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17060357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 17079190 - 17079247
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    |||||||  ||||||||||||||| |||| |||||||||| |||||||| | ||||||    
T  17079190 gccgatcttttttgattcgagatcgggagccagttctttggctcaagtttggttttgg 17079247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 27739936 - 27740029
Alignment:
Q  115 ttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagt 208  Q
    |||||||||||| ||||||||  ||||||||||| ||   ||||| ||  ||||||  ||||||||| |||||||||| |||||  ||||||||    
T  27739936 ttttctctggtggactgggggttaggggtgcccatctggattggtcctgaagtctggtgggccgatcgcttttgattcaagatcgagagtcagt 27740029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 33788694 - 33788653
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||||| |||||||||||||||  |||||||||||||||    
T  33788694 gggccgatcgcttttgattcgagattgggagtcagttctttg 33788653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 42048278 - 42048229
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagt 222  Q
    |||| ||||||||||||||||||| | |||| ||||| ||||||||||||    
T  42048278 gggctgatcacttttgattcgagaccgggagccagttttttgactcaagt 42048229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 23650384 - 23650444
Alignment:
Q  153 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
    ||||||| ||| ||||||  |||| |||| |||||||||||||||| ||||||| ||||||    
T  23650384 atttggttctagagtctggtgggctgatcgcttttgattcgagatcgggagtcatttcttt 23650444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 37831024 - 37831072
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||||||||||||| ||| | ||||||||  ||||||||||||    
T  37831024 gccgatcacttttgattcgaaatctgaagtcagtttcttgactcaagtt 37831072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 698208 - 698441
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  698208 catgccatgtctttcgtcttacatattgtgtgctggtttttagtgggccggttcatttggcttcgagatcgggagtcagggtctagttgcaatctttgtt 698307  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||  || |||||| |||||||||||||||| |    
T  698308 tgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtgctatagtctggtggaccgatctcttttgattcgagatcgg 698407  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||  ||||||||||||||||||||||||||    
T  698408 gagtcaactctttgactcaagttggtttttgggc 698441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 18593090 - 18593323
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  18593090 catgccatgtctttcgttttacatattgtgtgctgattttcggtgggccggttcatttggcttcgagatcgggagtcggggtctagttgcaatctttgtt 18593189  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| ||||||||| |||||| ||||||||||| ||||| ||||||||||| ||||||| |   |||| ||||||||||||||||||||| |    
T  18593190 tgacttgatttggtttttctctcgtgtaccgggggcgagggatgccctgctaatttggtgctatagtttagtgggcagatcacttttgattcgagatcgg 18593289  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    |||| |||||||||||||||||||||||||||||    
T  18593290 gagttagttctttgactcaagttggtttttgggc 18593323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 2 - 234
Target Start/End: Original strand, 34377946 - 34378178
Alignment:
Q  2 atgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgttt 101  Q
    ||||||| |||||| ||||| |||| |||||||||||||| || ||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  34377946 atgccatatctttcgtcttatatatcgtgtgctggttttcggtaggccggttcatttggcttcgagatcgggagtcgaggtctagctgcaatctttgttt 34378045  T
Q  102 gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagg 201  Q
    |||||||||||  ||||||||||||||| |||||| ||| |||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||| ||    
T  34378046 gacttgatttgggttttctctggtgtaccgggggcaaggagtgccctgctaatttggtactaaagtctggtgggccgatcacttttgattcgagatcggg 34378145  T
Q  202 agtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||| |||||||||||||||||    
T  34378146 agtcagttctttgacacaagttggtttttgggc 34378178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 37 - 234
Target Start/End: Original strand, 29087364 - 29087561
Alignment:
Q  37 ttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggc 136  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||| |||| |  ||||||| ||||| ||||||    
T  29087364 ttttcggtgggccggttcatttggcttcgagatcgggagtcggagtctagctgcaatctttgtttgacttgttttggtaattctctgttgtaccgggggc 29087463  T
Q  137 gaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||| | |||| |||||| ||| ||||||  || | |||| ||||||||||||||||||||||||||||||||| |||| ||||||| |||||    
T  29087464 gaggggtgctctgctattttggttctaaagtctggtggactgatcccttttgattcgagatcaggagtcagttctttgaatcaaattggtttctgggc 29087561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 13954441 - 13954235
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||| ||||||||||| |||||||||||  ||| |||||||||||  ||||| | |||||||| |||||||  |||||||||||||  | ||||||||||    
T  13954441 ttgtatgctggttttcggtgggccggttacttttgcttcgagatcaagagtcggtgtctagctgcaatctta-tttgacttgattttgtgtttctctggt 13954343  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| |  || ||||||||||   || ||||||| ||| ||||||  |||||||||||||||||||||||||| ||||||| | ||||| |||||||| |    
T  13954342 gtaccgaaggtgaggggtgcctt-ctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtcattactttggctcaagtttg 13954244  T
Q  226 tttttgggc 234  Q
     ||||||||    
T  13954243 gttttgggc 13954235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 7392205 - 7392052
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||  | |||||||| ||||||| ||||| ||||||||| | |||||||| ||||| | ||| |||||||||||  || |||||||    
T  7392205 gcttcgagatcgggagttggtgtctagctgcaatctt-gtttggcttgatttggtgtttctctgatgtaccgagggtgaggggtgcccttctgatttggt 7392107  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
     ||| ||||||  || ||||||||||||||||||||||| |||||||||||||||    
T  7392106 cctaaagtctggtggaccgatcacttttgattcgagatcgggagtcagttctttg 7392052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 32 - 232
Target Start/End: Original strand, 8297347 - 8297546
Alignment:
Q  32 gctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactg 131  Q
    ||||||||||||||||||| ||  ||| |||||||||||| ||||  | |||||||| |||| |||||||  ||||||||| | ||||||| |||||| |    
T  8297347 gctggttttcagtgggccgattacttttgcttcgagatcgagagttggtgtctagctgcaat-tttgttttgcttgatttggtgtttctctagtgtaccg 8297445  T
Q  132 ggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 231  Q
     ||| |||||||||||  || ||||||| ||| ||  ||  ||||  || | ||||||||||||||| ||||||||||||||| |||||||| | |||||    
T  8297446 agggtgaggggtgcccttctgatttggttctaaagcatggtgggctaataatttttgattcgagatcgggagtcagttctttggctcaagtttggttttg 8297545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 7195447 - 7195251
Alignment:
Q  26 ttgtgtgctggttttc-agtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctgg 124  Q
    ||||||| |||||||| |||||||| |||  ||| |||||||||||||||||| | | |||||| |||| || ||||| | ||||||  | |||||||||    
T  7195447 ttgtgtgttggttttccagtgggccagttacttttgcttcgagatcgggagtcggtggctagctgcaatatt-gtttggcgtgatttagtgtttctctgg 7195349  T
Q  125 tgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||  |||  |||||||||||  || ||||||   || ||||||  | |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  7195348 tgtaccagggt-gaggggtgcccttctgatttggccataaagtctggtgagccgatcacttttgattcgagatcgggagtcagttctttggctcaagtt 7195251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 214
Target Start/End: Complemental strand, 33259050 - 33258903
Alignment:
Q  66 agatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactata 165  Q
    |||||||||||| |  ||||||||||||||| ||||| |  |||||| | |||||||||||||| |  || |||||||| ||  ||  |||||| ||| |    
T  33259050 agatcgggagtcggtatctagctacaatctt-gtttggcgcgatttggtgtttctctggtgtaccgaaggtgaggggtgtccttctgttttggtgctaaa 33258952  T
Q  166 gtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    |||||  |||||||||||||||||||||||||||||||| |||||||||    
T  33258951 gtctggtgggccgatcacttttgattcgagatcaggagttagttctttg 33258903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 214
Target Start/End: Complemental strand, 14302604 - 14302451
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||||| |||||||| ||| ||  ||||| | |||| || | |||||||||||||  | ||| ||||| |||||  ||  ||||||    
T  14302604 gcttcgagatcgggagtccgtgtctagctgcaagcta-gtttggcgtgatctggtgtttctctggtgtatcgagggtgagggatgcccttctgttttggt 14302506  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
     ||| ||||||  || | ||||||||||| ||||||||  |||||||||||||||    
T  14302505 cctaaagtctggtggactgatcacttttggttcgagattgggagtcagttctttg 14302451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 25991936 - 25992066
Alignment:
Q  82 tctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatc 181  Q
    ||||||| ||||||| |||||||  |||||||| ||| |||||||||| |  |  |||| ||||||  ||| |||||| ||| ||||||  ||||| |||    
T  25991936 tctagctgcaatctt-gtttgacacgatttgatgtttttctggtgtaccgaagatgaggagtgcccttctattttggtgctaaagtctggtgggccaatc 25992034  T
Q  182 acttttgattcgagatcaggagtcagttcttt 213  Q
     ||||||||||||||||  |||||||||||||    
T  25992035 gcttttgattcgagatcgagagtcagttcttt 25992066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 211
Target Start/End: Original strand, 31721639 - 31721734
Alignment:
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttct 211  Q
    ||||||||||| || |||||  ||||||||||  || || |||| ||  ||||| | ||||||||| |||||||||||||||| ||||||||||||    
T  31721639 tttctctggtggaccgggggtaaggggtgcccttctgatgtggttctgaagtctaatgggccgatcgcttttgattcgagatcgggagtcagttct 31721734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 21402899 - 21402853
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactca 219  Q
    |||||||||||||||  ||||||||| ||||||||||||||||||||    
T  21402899 gggccgatcacttttagttcgagatcgggagtcagttctttgactca 21402853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 22675375 - 22675325
Alignment:
Q  184 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||| ||||||||||||||| |||||||| | ||||||||    
T  22675375 ttttgattcgagatcgggagtcagttctttggctcaagtttggttttgggc 22675325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 7162352 - 7162319
Alignment:
Q  200 ggagtcagttctttgactcaagttggtttttggg 233  Q
    ||||||||||||||||||||||||||||||||||    
T  7162352 ggagtcagttctttgactcaagttggtttttggg 7162319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 27713088 - 27713149
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||  ||||||||||||||| ||| ||||||||||| |||||||| | ||||||||    
T  27713088 gggccgatcgtttttgattcgagatcgggaatcagttctttggctcaagtttggttttgggc 27713149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 39184249 - 39184208
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  39184249 gggccgatcacttttgattcgagatcggaagtcagttctttg 39184208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 232
Target Start/End: Complemental strand, 26046023 - 26045967
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    ||||||||||||||||||||||| ||||| |||  |||| |||||||| | ||||||    
T  26046023 ccgatcacttttgattcgagatcgggagttagtgttttggctcaagtttggttttgg 26045967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 30964288 - 30964520
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||    
T  30964288 catgccatgtctttcgtcttacttattgtgtgctggttttcgatgggccggttcatttggcttcgagatcggaagtcggggtctagctgcaatctttgtt 30964387  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |||| |    
T  30964388 tgacttgatttggtttttctctggtgtaccgagggcgaggggtgccctgctaatttggtactataatctgatgggccgatcacttttgattcgtgatcgg 30964487  T
Q  201 gagtcagttctttgactcaagttggtttttggg 233  Q
    ||||| |||||||||||||||||||||||||||    
T  30964488 gagtccgttctttgactcaagttggtttttggg 30964520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8254874 - 8255107
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||  |||||||||  ||||||||||    
T  8254874 catgccatgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtt 8254973  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    | |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||| |||||||||    
T  8254974 tcacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcag 8255073  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
     |||||||||||||||||||||||||||||||||    
T  8255074 aagtcagttctttgactcaagttggtttttgggc 8255107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 8268292 - 8268525
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||  |||||||||  ||||||||||    
T  8268292 catgccatgtctttcgtcttacatattgtgtgttggttttcggtgggccggttcttttggcttcgagatcgggagtcgaggtctagctgtaatctttgtt 8268391  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    | |||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||| |||||||||    
T  8268392 tcacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttggtactaaagtctggtgggccgatcacttttgatccgagatcag 8268491  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
     |||||||||||||||||||||||||||||||||    
T  8268492 aagtcagttctttgactcaagttggtttttgggc 8268525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 4305574 - 4305801
Alignment:
Q  3 tgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttg 102  Q
    ||||||||||||  ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| | |||||||||||||    
T  4305574 tgccatgtcttttgtcttacatattgtgtactggttttcggtgggccggttcatttggcttcgagatcgggagtcgggggctagttgcaatctttgtttg 4305673  T
Q  103 acttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcagga 202  Q
    ||| |||||  |||||||||||||||| |||||| || ||||||| ||||||||||||||||||||||  ||| |||||||||||||||||||||| |||    
T  4305674 actggatttcgtttttctctggtgtaccgggggcaagcggtgccctgctaatttggtactatagtctggtggggcgatcacttttgattcgagatcggga 4305773  T
Q  203 gtcagttctttgactcaagttggttttt 230  Q
    || ||||||||| |||||||||||||||    
T  4305774 gttagttctttgtctcaagttggttttt 4305801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 62 - 233
Target Start/End: Complemental strand, 30167736 - 30167566
Alignment:
Q  62 ttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtac 161  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||   |||||| || ||| |  |||| ||||||||||| ||  ||||||||     
T  30167736 ttcgagatcgggagtcggggtctagctacaatctttgtttgatttgatttaggttttctttgatgtgc-cggggtgaggggtgccctgcctatttggtat 30167638  T
Q  162 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    |||||||    ||| |||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||    
T  30167637 tatagtcaagtgggtcgatcacttttgattcgagatcgggagtcggttctttgactcaagttgatttttggg 30167566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 234
Target Start/End: Original strand, 25753045 - 25753252
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||| ||||||||| |  ||||| | || |||| |||||||||||||||||| | |||||||| ||||||| ||||| | |||| || | ||||||||||    
T  25753045 ttgtttgctggtttccgatgggcagcttaattttgcttcgagatcgggagtcggtgtctagctgcaatctt-gtttggcgtgatgtggtgtttctctggt 25753143  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| || || |||| ||||||  || ||||||| ||| ||||||  ||| |||||||||||||||||||||| ||||||||||||||| |||||||| |    
T  25753144 gtaccggaggtgaggagtgcccgtcttatttggtcctaaagtctggtggggcgatcacttttgattcgagatcgggagtcagttctttggctcaagtttg 25753243  T
Q  226 tttttgggc 234  Q
     ||||||||    
T  25753244 attttgggc 25753252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 53823612 - 53823423
Alignment:
Q  43 gtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagggg 142  Q
    |||||||||||  ||| |||||||||||||||||| | ||||| || ||||||| | ||| ||||| ||| | |||||||||||||| || || ||||||    
T  53823612 gtgggccggttacttttgcttcgagatcgggagtcggtgtctaactgcaatctt-gcttggcttgacttggtgtttctctggtgtaccggaggtgagggg 53823514  T
Q  143 tgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    |||||  || |||||||  || ||||||  || || |||||||||||||||||||| ||||||||||||||| |||||||| | |||||||    
T  53823513 tgcccttctgatttggtcataaagtctggtggaccaatcacttttgattcgagatcgggagtcagttctttggctcaagtttggttttggg 53823423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 41 - 223
Target Start/End: Original strand, 19672989 - 19673169
Alignment:
Q  41 cagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagg 140  Q
    |||||||||||||  ||| |||||||||||||||||| | |||||||| ||||| ||||||| |||||| |||| ||||||||||  |  ||||| ||||    
T  19672989 cagtgggccggttacttttgcttcgagatcgggagtcagtgtctagctgcaatc-ttgtttggcttgatatgatatttctctggttgatcgggggtgagg 19673087  T
Q  141 ggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||  ||  |||||| ||| ||||||  || ||  || ||||| |||||||||||||||||||||||||| ||||||||    
T  19673088 ggtgcccttctgttttggtcctaaagtctggtggaccattccctttt-attcgagatcaggagtcagttctttggctcaagtt 19673169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 24 - 234
Target Start/End: Complemental strand, 31050871 - 31050663
Alignment:
Q  24 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 123  Q
    |||| |||| |||||| | |||||||||||  ||| ||||||||| |||||||| | | |||||| ||||| | |||||||||||| || | || || ||    
T  31050871 tattatgtgttggtttccggtgggccggttacttttgcttcgagaccgggagtcggtgactagctgcaatcct-gtttgacttgatatggtgtt-ctttg 31050774  T
Q  124 gtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
     ||||| |||||||||||||||||  || ||||||| ||| ||||||  |||||||||||||||||||||||||| | ||| || ||||||  |  ||||    
T  31050773 atgtaccgggggcgaggggtgccctactgatttggttctaaagtctggtgggccgatcacttttgattcgagatcggaagttaggtctttggtttgagtt 31050674  T
Q  224 ggtttttgggc 234  Q
    |||||||||||    
T  31050673 ggtttttgggc 31050663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 22811367 - 22811172
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||||||||| ||||| |||||  ||| ||||||||||||| | |  | |||||| | |||| ||||||||   ||||||| | ||||||||||    
T  22811367 ttgtgtgctggttttcggtgggtcggttacttttgcttcgagatcggaacttggtgtctagttgcaat-tttgtttggtgtgatttggtgtttctctggt 22811269  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||| | |||| |||| ||||||  || |||||||  || ||||||  |||||||||| |||| |||||||||| ||||||||||||||| ||||||||    
T  22811268 gta-tcggggtgaggagtgcccttctgatttggtcttaaagtctggtgggccgatcattttttattcgagatcgggagtcagttctttggctcaagtt 22811172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 19815415 - 19815236
Alignment:
Q  43 gtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgagggg 142  Q
    ||||||| |||  ||| |||||||||||| ||||| | |||||||| ||||||| ||||| |||||| |  | ||| ||||||  || ||||| ||||||    
T  19815415 gtgggccagttacttttgcttcgagatcgagagtcggtgtctagctgcaatctt-gtttggcttgatattgtatttttctggttgaccgggggtgagggg 19815317  T
Q  143 tgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||  ||  |||||| ||| ||||||  || ||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  19815316 tgcccttctgttttggtcctaaagtctggtggaccgattactttttattcgagatcaggagtcagttctttggctcaagtt 19815236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 206
Target Start/End: Complemental strand, 39421187 - 39421042
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    ||||||||||||||| || | |||||||| ||||||| ||||| | ||||||| | |||||||  ||||||| ||| |||||||||||  || || ||||    
T  39421187 gcttcgagatcgggaatcggtgtctagctgcaatctt-gtttggcgtgatttggtgtttctctaatgtactgagggtgaggggtgcccttctgatatggt 39421089  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtca 206  Q
      ||||| |||  |||||||||||||||||||||||||| |||||||    
T  39421088 cttatagcctggtgggccgatcacttttgattcgagatcgggagtca 39421042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 234
Target Start/End: Original strand, 2825691 - 2825863
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||| | ||||  | |||||||| ||||| | |||||||||||| || | || ||||||||||| | ||||||||||||| | ||| |||||||    
T  2825691 gcttcgagattgagagttggtgtctagctgcaatcat-gtttgacttgatatggtgtt-ctctggtgtaccgagggcgaggggtgctctgctgatttggt 2825788  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
     ||| |||| |  |||||||||| ||||||||||||||| ||| |||  |||||| |||||  ||||||||||||    
T  2825789 tctaaagtccggtgggccgatcatttttgattcgagatcgggaatcacctctttggctcaatgtggtttttgggc 2825863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 38929846 - 38929907
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||    
T  38929846 gggccgatcacttttgattcgagatcaagagtcagttctttggctcaagtttgattttgggc 38929907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 225
Target Start/End: Complemental strand, 36962677 - 36962626
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  36962677 gggccgattacttttgattcgagatcaggagtcag-tctttgactcaagttgg 36962626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 38637305 - 38637238
Alignment:
Q  162 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttt 229  Q
    |||||||||  |||||||||||||||||||||||||| ||||||| ||||||| || |||| ||||||    
T  38637305 tatagtctggcgggccgatcacttttgattcgagatcgggagtcaattctttggcttaagtaggtttt 38637238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 39041336 - 39041285
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttg 224  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||    
T  39041336 gggccgatcacttttgattcgagatcaggagtcagtttctagactcaagttg 39041285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 139 - 223
Target Start/End: Complemental strand, 46698881 - 46698797
Alignment:
Q  139 ggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||  || ||||||| || |||||||  ||||||||  |||||||||||||||| |||||||||||||||  |||||||    
T  46698881 ggggtgcccttctgatttggtcctgtagtctggtgggccgattgcttttgattcgagatcgggagtcagttctttggttcaagtt 46698797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 2792335 - 2792286
Alignment:
Q  174 ggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||||||||||||||||||||| | ||||||||  ||||||||||||    
T  2792335 ggccgatcacttttgattcgagatcggaagtcagtttcttgactcaagtt 2792286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 41118040 - 41117968
Alignment:
Q  162 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||| ||||  ||||||||||||||||||||| | ||| ||||||||| ||||| || | ||||||||    
T  41118040 tatagtctggagggaagatcacttttgattcgagatcggaagtaagttctttggctcaaattaggttttgggc 41117968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Complemental strand, 21387263 - 21387216
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||||||||||||||||||| | ||||||||||| || |||||||    
T  21387263 ccgatcacttttgattcgagatcggaagtcagttcttcgattcaagtt 21387216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 17416571 - 17416541
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggag 203  Q
    |||||||||||||||||||||||||||||||    
T  17416571 gggccgatcacttttgattcgagatcaggag 17416541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 28966897 - 28966947
Alignment:
Q  184 ttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||  ||||||||||||||| |||||||| | ||||||||    
T  28966897 ttttgattcgagattgggagtcagttctttggctcaagtttggttttgggc 28966947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Complemental strand, 35341391 - 35341341
Alignment:
Q  182 acttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    ||||||||| ||||||| | |||||| |||||| |||||||||||||||||    
T  35341391 acttttgatccgagatcggaagtcagctctttggctcaagttggtttttgg 35341341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 35800511 - 35800569
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||| |||||||||||||||| | |||||||||||||| || |||| | ||||||||    
T  35800511 ccgatcgcttttgattcgagatcggaagtcagttctttgattccagtttggttttgggc 35800569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 40813843 - 40813797
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactca 219  Q
    |||||||||||||||||||||||||| |||| || || |||||||||    
T  40813843 gggccgatcacttttgattcgagatcgggagccaattttttgactca 40813797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 16501750 - 16501791
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||||| |||||||||||||||| |||||||| ||||||    
T  16501750 gggccgatcgcttttgattcgagatcgggagtcagctctttg 16501791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 202
Target Start/End: Complemental strand, 37707417 - 37707388
Alignment:
Q  173 gggccgatcacttttgattcgagatcagga 202  Q
    ||||||||||||||||||||||||||||||    
T  37707417 gggccgatcacttttgattcgagatcagga 37707388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Original strand, 49747526 - 49747586
Alignment:
Q  153 atttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
    ||||||| ||| ||||||  | ||||||||||||||||| ||||||  |||||||||||||    
T  49747526 atttggttctaaagtctggtgagccgatcacttttgatttgagatcgagagtcagttcttt 49747586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 3117339 - 3117573
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||| | |||||||||||    
T  3117339 catgccatgtctttcatcttacatattgtgtgttggttttcagtgggccggttcatttggcttcgagattgggagtcggggtctagttgcaatctttgtt 3117438  T
Q  101 t-gacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatca 199  Q
    | ||||||||||| |||||||||||||| | ||||||||||||||||| ||||||||| |  |||||| ||  |||||||||||||||||||| |||||     
T  3117439 ttgacttgatttggtttttctctggtgttccgggggcgaggggtgccctgctaatttgttgatatagtatggtgggccgatcacttttgattcaagatcg 3117538  T
Q  200 ggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||||||||||||||||||||||    
T  3117539 ggagtcagttctttgactcaagttggtttttgggc 3117573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 16510502 - 16510304
Alignment:
Q  34 tggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactggg 133  Q
    ||||||||  ||||||||||  ||| |||||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||||||||||| | |    
T  16510502 tggttttcgttgggccggttacttttgcttcgagatcgggagtcggggtctagctgcaatctttgtttgacttgatatggtttttctctggtgtaccgag 16510403  T
Q  134 ggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgg 232  Q
    ||| |||||||||| ||||||||||| ||| |||||   |||||||||||||||||||||||||   ||||||||||||| ||||||||||||||||||    
T  16510402 ggcaaggggtgccctgctaatttggttctaaagtctagtgggccgatcacttttgattcgagattgagagtcagttcttttactcaagttggtttttgg 16510304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 234
Target Start/End: Complemental strand, 20702011 - 20701804
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| |  ||||||||||  ||| |||| |||||||||| || | |||||||| |||  |||||||| | ||||||| ||||||||||||    
T  20702011 ttgtgtgatggtttccgatgggccggttacttttgctttgagatcgggattcggtgtctagctgcaaa-tttgtttggcgtgatttggtttttctctggt 20701913  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttgg 225  Q
    |||| ||||| |||||||||||  || |||||||  | ||| |||  | |||||||||||||||||||||||| ||||| ||||||||| || ||||| |    
T  20701912 gtaccgggggtgaggggtgcccttctgatttggtcatttagactggtgtgccgatcacttttgattcgagatcgggagttagttctttggcttaagtttg 20701813  T
Q  226 tttttgggc 234  Q
     ||||||||    
T  20701812 gttttgggc 20701804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 15132732 - 15132611
Alignment:
Q  24 tattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctg 123  Q
    ||||||||| |||||||| |||||||||||  ||| |||||||||||||||||| | | |||||| |||||  ||||||||||||| ||  | |||||||    
T  15132732 tattgtgtgatggttttcggtgggccggttacttttgcttcgagatcgggagtcggtgactagctgcaatc-ctgtttgacttgatatg-gtgttctctg 15132635  T
Q  124 gtgtactgggggcgaggggtgccc 147  Q
     |||||||||||||||||||||||    
T  15132634 atgtactgggggcgaggggtgccc 15132611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 32935558 - 32935342
Alignment:
Q  15 catcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgat 114  Q
    |||||||||||||||||||||| || | ||||| |||||  ||| |||| |||||| | |||  | |||||||| |||||||  |||| |||| | || |    
T  32935558 catcttacatattgtgtgctggattccggtgggtcggttacttttgctttgagatcagaagttggtgtctagctgcaatcttc-tttggcttgttatggt 32935460  T
Q  115 ttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
     ||||| || || |  ||||| ||||||| |||  || ||||||| ||  ||||||  ||||||||| |||||||||||||||| ||||||||||||| |    
T  32935459 gtttctatgatggatcgggggtgaggggttcccttctgatttggtcctgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttcttgg 32935360  T
Q  215 actcaagttggtttttgg 232  Q
    ||||||||| | ||||||    
T  32935359 actcaagtttgattttgg 32935342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 3880791 - 3880623
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||| ||||||||| | ||||||| |||  ||| |||| ||||||||||||| | |||||||| | ||||| ||||| | ||||||| | ||||||||||    
T  3880791 ttgtttgctggtttccggtgggccagttacttttgctttgagatcgggagtcggtgtctagctgctatctt-gtttggcatgatttggtgtttctctggt 3880693  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgag 195  Q
     ||| | ||| ||| |||||||  || ||||||| ||| ||| ||  |||||||||||||||||||||||    
T  3880692 ttaccgagggtgagaggtgcccttctgatttggtcctaaagtttggtgggccgatcacttttgattcgag 3880623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 26216081 - 26216042
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctt 212  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  26216081 gggccgatcacttttgattcgagatcgggagtcagttctt 26216042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 34105432 - 34105479
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 220  Q
    |||||||||||||||||||||||||| ||||||||||  |||||||||    
T  34105432 gggccgatcacttttgattcgagatcgggagtcagtttcttgactcaa 34105479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 12794133 - 12794173
Alignment:
Q  173 gggccgatca-cttttgattcgagatcaggagtcagttctt 212  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  12794133 gggccgatcaacttttgattcgagatcaggagtcagttctt 12794173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 214
Target Start/End: Original strand, 9224042 - 9224101
Alignment:
Q  155 ttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||| ||| ||||||  |||| |||| |||||||||||||||| |||||||||||||||    
T  9224042 ttggtcctaaagtctggtgggctgatcgcttttgattcgagatcgggagtcagttctttg 9224101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 13423488 - 13423535
Alignment:
Q  176 ccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||||||||||||||||  ||||| |||||||| ||||||||    
T  13423488 ccgatcacttttgattcgagatcgagagtcggttctttggctcaagtt 13423535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 26534781 - 26534742
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctt 212  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  26534781 gggccgatcacttttgattcgagattgggagtcagttctt 26534742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 33968670 - 33968625
Alignment:
Q  178 gatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||| |||||||||||||||| |||||||||||||||  |||||||    
T  33968670 gatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 33968625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Original strand, 32316393 - 32316437
Alignment:
Q  179 atcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||||||||||||||| | ||| |||||||||| |||||||    
T  32316393 atcacttttgattcgagatcggtagtaagttctttgattcaagtt 32316437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 20611630 - 20611863
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||| |||| |||| ||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||||| |||||||||| |||||||||||    
T  20611630 catgctatgtttttcgtcttacatattgtgtgctggttttcggtgggtcggttcatttggtttcgagatcaggagtcggggtctagctgcaatctttgtt 20611729  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||||| ||  |||||||||| ||||||||||||||| |    
T  20611730 tgacttgatttggtttttctctggtgtaccgggggcgaggggtgccctgctaatttcgtactatagtttgttgggccgatcatttttgattcgagatcgg 20611829  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||| ||||||||||||||||    
T  20611830 gagtcagttctttgacttaagttggtttttgggc 20611863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 2392737 - 2392507
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  2392737 gccatgtctttcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagatcgggagtcggggtctagctgcaatctttgtttga 2392638  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    |||| |||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||  || ||||||||||||||||||||||  | ||    
T  2392637 cttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaag 2392538  T
Q  204 tcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||| || ||||||||||||||||    
T  2392537 tcagttctttgtcttaagttggtttttgggc 2392507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 2394484 - 2394255
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| |||||||||||||||||||||||||  |||| |||||||||||||||| |||||||||||| |||||||||| ||||||||||||||    
T  2394484 gccatgtctttcgtcttacatattgtgtgctggttttcgatgggacggttcatttggcttcaagatcgggagtcggggtctagctgcaatctttgtttga 2394385  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggag 203  Q
    |||| |||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||  || ||||||||||||||||||||||  | ||    
T  2394384 cttggtttggttttactctggtgtaccgggggcgaggggtgccctgctaatttggtactatagcctggtggaccgatcacttttgattcgagattggaag 2394285  T
Q  204 tcagttctttgactcaagttggtttttggg 233  Q
    ||||||||||| || |||||||||||||||    
T  2394284 tcagttctttgtcttaagttggtttttggg 2394255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 19176350 - 19176582
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||| |||||||||||||||||| |||||| ||||| ||||||||||||||| |||||| |||||||||| |||||||||||    
T  19176350 catgccatgtctttcctcttacttattgtgtgctggttttcggtgggctggttcctttggcttcgagatcaggagtcggggtctagctgcaatctttgtt 19176449  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    |||||| ||||| |||||||||| ||||| ||| | || |||||||| ||||||||||| ||| ||||||  |||||||||||||||||||||||||| |    
T  19176450 tgacttaatttggtttttctctgatgtaccgggagtga-gggtgccctgctaatttggttctaaagtctggtgggccgatcacttttgattcgagatcgg 19176548  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||||||||||||||||||||||    
T  19176549 gagtcagttctttgactcaagttggtttttgggc 19176582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34475988 - 34475755
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    |||||| |||||||  |||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  34475988 catgccttgtcttttgtcttacatatcgtgtgctggttttcgatgggccgattcatttggcttcgagatcgggagtcggggtctagctgcaatttttgtt 34475889  T
Q  101 tgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcag 200  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||||  |||||||||||||||||||||||||| |    
T  34475888 tgacttggtttgatttttctctggtgtaccgggggcgaggggtgccctgctaatttgtttctatagtctggtgggccgatcacttttgattcgagatcgg 34475789  T
Q  201 gagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||  |||| || | |||||| |||||||||    
T  34475788 gagtcaaatcttggaattaagttgatttttgggc 34475755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 4 - 234
Target Start/End: Original strand, 45163699 - 45163935
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| ||||||||||||||||||||||||   | ||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||||    
T  45163699 gccatgtctttcgtcttacatattgtgtgctggtttttgataggccggttcatttggcttcaagatcggaagtcggggtctagctgcaatctttgtttga 45163798  T
Q  104 cttgatttgatttttctctgg----tgtactgggggcgaggggtgcccagctaatttggtactatagtct--gaagggccgatcacttttgattcgagat 197  Q
    |||| |||||||||||||| |    ||||| | ||||||||||||||| |||||||||||||||||||||     |||||||||||||||||||||||||    
T  45163799 cttggtttgatttttctctagtgcatgtaccgagggcgaggggtgccctgctaatttggtactatagtcttgtgtgggccgatcacttttgattcgagat 45163898  T
Q  198 caggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||| |||||||| |||| || ||||||||||||||||    
T  45163899 cagaagtcagttttttgtcttaagttggtttttgggc 45163935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 47235566 - 47235729
Alignment:
Q  4 gccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttga 103  Q
    |||||||||||| ||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  47235566 gccatgtctttcgtcttacataatgtgtgctggttttcgatgggccggttcatttggcttcgagatcgggagtcagggtctagctgcaatctttgtttga 47235665  T
Q  104 cttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagt 167  Q
    |||| |||| ||||||||  |||||| ||||||||||||||||| |||||||||| ||||||||    
T  47235666 cttggtttggtttttctccagtgtaccgggggcgaggggtgccctgctaatttgggactatagt 47235729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 231
Target Start/End: Complemental strand, 23328564 - 23328354
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt 116  Q
    ||||||||||||||||||||| | |  ||||||||||  ||| |||||||||||||||||  | |||||||| |||| ||||||||||||||| || | |    
T  23328564 tcttacatattgtgtgctggtgtccgatgggccggtt--ttttgcttcgagatcgggagttggtgtctagctgcaat-tttgtttgacttgatatggtgt 23328468  T
Q  117 ttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgac 216  Q
    | ||||||||||| ||||||||||||||||| | | ||||||| ||| ||| ||  || ||||||||||||||||||||||| ||||| || | |||| |    
T  23328467 t-ctctggtgtaccgggggcgaggggtgccctgttgatttggttctaaagtttggtggaccgatcacttttgattcgagatcgggagttagctttttggc 23328369  T
Q  217 tcaagttggtttttg 231  Q
    |||||||||||||||    
T  23328368 tcaagttggtttttg 23328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 25647557 - 25647753
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| |  ||||||||||  ||| ||||||||| |||||||| | |||||||| |||| | |||||| | ||||||| | ||||||||||    
T  25647557 ttgtgtgttggtttccgatgggccggttacttttgcttcgagaacgggagtcggtgtctagctgcaat-tctgtttggcgtgatttggtgtttctctggt 25647655  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||| ||| | || ||||||||  || ||||||| ||| ||||||| ||||| |||||||||||||||||||| |||||  |||||||| || |||||    
T  25647656 gtaccgggagtgaagggtgcccttctgatttggtcctaaagtctgacgggcctatcacttttgattcgagatcgggagttggttctttggcttaagtt 25647753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 234
Target Start/End: Original strand, 17550965 - 17551037
Alignment:
Q  162 tatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17550965 tatagtctggtgggccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttgggc 17551037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 40023799 - 40023573
Alignment:
Q  6 catgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgact 105  Q
    ||||||| || |||||||||||||||  |||| | | |||| ||||||  ||| ||||||||||||| |||  | |||||||| ||||| |  |||||||    
T  40023799 catgtctatcgtcttacatattgtgtattggtgtccggtggaccggttatttttgcttcgagatcggaagttggtgtctagctgcaatcatgttttgact 40023700  T
Q  106 tgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtc 205  Q
    |||| || | || |||| |||||| ||||||||||| ||||| ||| |||| ||  || ||||||  || ||||||||||||||||||||||| ||||||    
T  40023699 tgatatggtgtt-ctctagtgtaccgggggcgaggg-tgccctgctgattttgttttaaagtctggtggaccgatcacttttgattcgagatcgggagtc 40023602  T
Q  206 agttctttgactcaagttggtttttgggc 234  Q
      ||||||| || ||||||||||||||||    
T  40023601 gattctttggcttaagttggtttttgggc 40023573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 9584173 - 9584054
Alignment:
Q  115 ttttctctggtgtactgggggcgag-gggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttcttt 213  Q
    |||||||| |||||| ||||| ||| |||||||| ||||||||| ||||| ||||||  ||  |||||||||||||||||||||| ||||||||||||||    
T  9584173 ttttctcttgtgtaccggggg-gagagggtgccctgctaatttgatactaaagtctggtggatcgatcacttttgattcgagatcgggagtcagttcttt 9584075  T
Q  214 gactcaagttggtttttgggc 234  Q
    | |||||| ||||||||||||    
T  9584074 gtctcaagatggtttttgggc 9584054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 43012372 - 43012452
Alignment:
Q  151 taatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttg 231  Q
    ||||||||| ||| ||||||  || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43012372 taatttggttctaaagtctggtggcccgatcacttttgattcgagatcgggagtcagttctttgactcaagttggtttttg 43012452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 223
Target Start/End: Original strand, 14193846 - 14194009
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgattt-ttctctggtgtactgggggcgaggggtgcccagctaatttgg 158  Q
    ||||||| |||||||||| | ||||||||||||| | || ||| | ||||||| | | |||| |||||||| ||| | |||||||||||  || ||||||    
T  14193846 gcttcgatatcgggagtcggtgtctagctacaat-tctgcttggcgtgatttggtgtgttctttggtgtaccgggagtgaggggtgcccttctgatttgg 14193944  T
Q  159 tactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    | ||| ||||||  || ||||||||||||||||||||||  |||||| |||||||| ||||||||    
T  14193945 tcctaaagtctggcggaccgatcacttttgattcgagattgggagtcggttctttggctcaagtt 14194009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 37123289 - 37123442
Alignment:
Q  60 gcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggt 159  Q
    |||||||||||||||||| | |||||||| |||| |||||||| | ||||||| | |||||||| ||||| |  || |||||||||||   |  ||||||    
T  37123289 gcttcgagatcgggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctgatgtaccgaaggagaggggtgcccttatgttttggt 37123387  T
Q  160 actatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
     ||| | | ||  |||||||||||||||||||||||||  |||||||||||||||    
T  37123388 cctaaattttggtgggccgatcacttttgattcgagattgggagtcagttctttg 37123442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 45398776 - 45398876
Alignment:
Q  134 ggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    |||||||||||||| ||| ||||||   || ||||||  || |||||||||||||||||||||||  ||||||| ||||||| | |||||||||||||||    
T  45398776 ggcgaggggtgccctgctgatttggatttaaagtctggtggaccgatcacttttgattcgagatcgagagtcagctctttgatttaagttggtttttggg 45398875  T
Q  234 c 234  Q
    |    
T  45398876 c 45398876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 1652948 - 1652887
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||||||| | ||||||||    
T  1652948 gggccgatcacttttgattcgagatcaggagttagttctttggttcaagtttggttttgggc 1652887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 214
Target Start/End: Complemental strand, 14755471 - 14755286
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||| ||| |  ||||||||||  ||| |||||||||||||||||| |  ||||||| ||||||| ||||  |  | |||| | ||||||||||    
T  14755471 ttgtgtgctgatttccgatgggccggttacttttgcttcgagatcgggagtcggtatctagctgcaatctt-gtttcgcgcgttttggtgtttctctggt 14755373  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    |||| |  || |||||||||||   |  ||| || ||| ||||||  |||||||||||||||||||| ||||| |||||||||||||||    
T  14755372 gtaccgaaggtgaggggtgccctttt--ttttgtgctaaagtctggtgggccgatcacttttgattcaagatcgggagtcagttctttg 14755286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 47945725 - 47945786
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||||||||||||| |||||||||| |||| |||||||| | ||||||||    
T  47945725 gggccgatcacttttgattcgagatcgggagtcagttatttggctcaagtttgattttgggc 47945786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 33144007 - 33143949
Alignment:
Q  177 cgatcacttttgattcgagatcaggagtcagttctttgactcaag-ttggtttttgggc 234  Q
    |||||||||||||||||||||| |||||||||||||||  ||||| || ||||||||||    
T  33144007 cgatcacttttgattcgagatcgggagtcagttctttggatcaagattagtttttgggc 33143949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Original strand, 30127283 - 30127332
Alignment:
Q  175 gccgatcacttttgattcgagatcaggagtcagttct-ttgactcaagtt 223  Q
    ||||||| |||||||||||||||| |||||||||||| ||||||||||||    
T  30127283 gccgatcgcttttgattcgagatcgggagtcagttctcttgactcaagtt 30127332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 39021338 - 39021297
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  39021338 gggccgatcacttttgattcgaggtcgggagtcagttctttg 39021297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 47235729 - 47235778
Alignment:
Q  185 tttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  47235729 tttgattcgagatcgagagtcggttctttgacttaagttggtttttgggc 47235778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 198
Target Start/End: Original strand, 31482880 - 31482928
Alignment:
Q  150 ctaatttggtactatagtctgaagggccgatcacttttgattcgagatc 198  Q
    |||||||||| ||||||||||  |||| |||||||||||||||||||||    
T  31482880 ctaatttggttctatagtctggcgggcggatcacttttgattcgagatc 31482928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 5556580 - 5556639
Alignment:
Q  164 tagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    |||||||  ||| ||||| |||||||||||||||| |||||||||||||||  |||||||    
T  5556580 tagtctggtggggcgatcgcttttgattcgagatcgggagtcagttctttggttcaagtt 5556639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 14879421 - 14879504
Alignment:
Q  140 gggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||||  || ||| ||| ||| ||||||  |||||||||||||||||||||||||| |||||| |||| |||  |||||||    
T  14879421 gggtgcccttctgattgggtcctaaagtctggtgggccgatcacttttgattcgagatcgggagtctgttcgttggatcaagtt 14879504  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 823497 - 823447
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||||||||||||||||||||||||  ||||||||| ||| | |||||||    
T  823497 gggccgatcacttttgattcgagatcgagagtcagttgtttcattcaagtt 823447  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 147
Target Start/End: Complemental strand, 4464132 - 4464024
Alignment:
Q  37 ttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggc 136  Q
    ||||| |||||||||||  ||| |||||||||||||||||| | |||||| | ||||| |||| || | ||||||| | ||||||| |||||| | |||     
T  4464132 ttttcggtgggccggttacttttgcttcgagatcgggagtcggtgtctagttgcaatc-ttgtgtggcgtgatttggtgtttctct-gtgtaccgagggt 4464035  T
Q  137 gaggggtgccc 147  Q
    |||||||||||    
T  4464034 gaggggtgccc 4464024  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 31424256 - 31424304
Alignment:
Q  174 ggccgatcacttttgattcgagatcaggagtcagttctttgactcaagt 222  Q
    ||||| || |||||||||||||||| ||||||||| |||||| ||||||    
T  31424256 ggccggtcgcttttgattcgagatcgggagtcagtgctttgattcaagt 31424304  T

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Target: scaffold0068 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36006 - 35773
Alignment:
Q  1 catgccatgtctttcatcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtt 100  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||    
T  36006 catgccatgtctttcgtcttacatattgtgtgctggctttcggtgggccggttcatttggcttcgagatcgggagtcgaggtctagttgcaatctttgtt 35907  T
Q  101 tgacttga-tttgatttttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatca 199  Q
    |||||| | |||| |||||||||||||||| |||||||||||||||| ||||||||||||  ||||||||   ||||||||||||||||||||||||||     
T  35906 tgacttaattttggtttttctctggtgtaccgggggcgaggggtgcctagctaatttggttatatagtctagtgggccgatcacttttgattcgagatcg 35807  T
Q  200 ggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||||| |||||||||| ||||||||||||||||    
T  35806 ggagtca-ttctttgacttaagttggtttttgggc 35773  T

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Target: scaffold0200 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 19273 - 19463
Alignment:
Q  44 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 143  Q
    |||| ||||| |||| |||||||||||||||||| | |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  19273 tgggtcggttaattttgcttcgagatcgggagtcggtgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 19372  T
Q  144 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttgggc 234  Q
    ||||  || ||||||| ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | ||||||||    
T  19373 gcccttctgatttggtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttgggc 19463  T

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Target: scaffold0050 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 220
Target Start/End: Original strand, 36580 - 36773
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    ||||||| |||||| | |||||||| || |||| | ||||||||| |||||| | |||||||| |||| |||||||| | ||||||| | ||||||||||    
T  36580 ttgtgtgttggtttccggtgggccgattaattttgattcgagatcaggagtcggtgtctagctgcaat-tttgtttggcgtgatttggtgtttctctggt 36678  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 220  Q
    |||| | | | |||||||||||  || ||||||| ||| ||||||  |||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  36679 gtaccgagagtgaggggtgcccttctgatttggtcctaaagtctggcgggctgatcacttttgattcgagatcgggagtcagttctttgtctcaa 36773  T

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Target: scaffold0119 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 233
Target Start/End: Complemental strand, 42329 - 42140
Alignment:
Q  44 tgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggtgtactgggggcgaggggt 143  Q
    |||| ||||| |||| ||||||||||||||||||   |||||||| || ||||  |||| ||| ||||||| |||||||||| |||    || |||||||    
T  42329 tgggtcggttaattttgcttcgagatcgggagtcgatgtctagctgcattcttgttttggcttaatttgatgtttctctggtataccaaaggtgaggggt 42230  T
Q  144 gcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagttggtttttggg 233  Q
    ||||  || |||| || ||| ||||||  |||||||||||||||||||||||||| | ||||||||||||| |||||||| | |||||||    
T  42229 gcccttctgatttagtcctaaagtctggtgggccgatcacttttgattcgagatcggaagtcagttctttggctcaagtttggttttggg 42140  T

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Target: scaffold1613 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 1233 - 1038
Alignment:
Q  17 tcttacatattgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgattt-gatt 115  Q
    |||||||||||||||||||| ||  ||||||||| ||  ||| |||||||||| ||||||  | |||||||| ||||||| |||||| ||||||| | |     
T  1233 tcttacatattgtgtgctggattctagtgggccgattacttttgcttcgagattgggagttggtgtctagctgcaatctt-gtttga-ttgattttggtg 1136  T
Q  116 tttctctggtgtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttg 214  Q
    ||||||||||| ||||||   ||||||| |||  || |||||||  |  ||||||  ||||||||| |||||||||||||||| |||||||||||||||    
T  1135 tttctctggtggactgggaatgaggggt-cccttctgatttggtcatgaagtctggtgggccgatcgcttttgattcgagatcgggagtcagttctttg 1038  T

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Target: scaffold0063 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 58000 - 58196
Alignment:
Q  26 ttgtgtgctggttttcagtgggccggttcatttggcttcgagatcgggagtccgggtctagctacaatctttgtttgacttgatttgatttttctctggt 125  Q
    |||||||||| ||| || | ||||||||  ||| ||||||||||||||||||   |||||||| ||||| ||||||| | ||||||| | ||||||||||    
T  58000 ttgtgtgctgatttccattaggccggttacttttgcttcgagatcgggagtcgttgtctagctgcaatc-ttgtttggcgtgatttggtgtttctctggt 58098  T
Q  126 gtactgggggcgaggggtgcccagctaatttggtactatagtctgaagggccgatcacttttgattcgagatcaggagtcagttctttgactcaagtt 223  Q
    ||||   ||| |   |||||||  |  ||||||| ||| ||| ||  |||||||||||||||||||| ||||| | ||||| || ||||  |||||||    
T  58099 gtacctagggtgtatggtgcccttcagatttggtcctaaagtttggtgggccgatcacttttgattcaagatcggaagtcaattgtttggatcaagtt 58196  T

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Target: scaffold0620 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 3849 - 3896
Alignment:
Q  173 gggccgatcacttttgattcgagatcaggagtcagttctttgactcaa 220  Q
    |||||||||| ||||||||||||||| ||||||||||  |||||||||    
T  3849 gggccgatcaattttgattcgagatcgggagtcagtttcttgactcaa 3896  T

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Target: scaffold0343 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 5751 - 5785
Alignment:
Q  200 ggagtcagttctttgactcaagttggtttttgggc 234  Q
    |||||||||||||||||||| ||||||||||||||    
T  5751 ggagtcagttctttgactcaggttggtttttgggc 5785  T

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