View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_low_25 (Length: 226)
Name: NF15758_low_25
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 33856806 - 33857024
Alignment:
| Q |
1 |
agaaagtgggaaaagtaattaaggaaaggcgcttaaattttgagatagtggggggaagcgggaagacgaaattttcggattgttccgttgaaattgatta |
100 |
Q |
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| T |
33856806 |
agaaagtgggaaaagtaattaaggaaaggcgcttaaattttgagatagtggggggaagcgggaagacgaaattttcggattgttccgttgaaattgatta |
33856905 |
T |
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| Q |
101 |
gtgggttgactttgggttatgggcttttttgaattgagttctattttcactattcatacatttgaaatctctatcgattaattaattcctattataccag |
200 |
Q |
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| T |
33856906 |
gtgggttgactttgggttatgggcttttttgaattgagttctattttcactattcatacatttgaaatctctatcaattaattaattcctattataccag |
33857005 |
T |
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| Q |
201 |
atttattttgattcttttc |
219 |
Q |
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||||||||||||||||||| |
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| T |
33857006 |
atttattttgattcttttc |
33857024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 26141766 - 26141646
Alignment:
| Q |
4 |
aagtgggaaaagtaattaaggaaa-ggcgcttaaattttgagatagtggggggaagcgggaagacgaaattttcggattgttccg-ttgaaattgatta- |
100 |
Q |
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| T |
26141766 |
aagtgggaaaggtatataaggaaaaggtgcttaaattctgagataatgagggaaagcggaaa--cgaaattttaggatttttacggttggaattgattac |
26141669 |
T |
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| Q |
101 |
gtgggttgactttgggttatggg |
123 |
Q |
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| T |
26141668 |
gtgggttgactttggtttatggg |
26141646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 31489569 - 31489506
Alignment:
| Q |
67 |
cgaaattttcggattgttccgttgaaattgatta-gtgggttgactttgggttatgggcttttt |
129 |
Q |
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| T |
31489569 |
cgaaattttaggattttacggttggaattgattacgtgggttgactttggtttatgggcttttt |
31489506 |
T |
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