View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_low_28 (Length: 211)
Name: NF15758_low_28
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_28 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 5482022 - 5481874
Alignment:
| Q |
13 |
gagatgaattacgaagatctagttctatgagactgctcatgttgaatatccaagaaggcattgaggaatgaaaaggatttcctgagagatcaaggacaga |
112 |
Q |
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| T |
5482022 |
gagatgaattacaaagatctagttctatgagactgctcatgttgaatatccaagaaggtattgaggaatgaaaaggatttcctgagagatcaaggacaga |
5481923 |
T |
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| Q |
113 |
aagtgatgtcatatttaaaaacggtgaagatgaagggagagcaacaaga |
161 |
Q |
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| T |
5481922 |
aagtgatgtcatatttaaaaacggtgaagatgaagggagagcaacaaga |
5481874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 46 - 191
Target Start/End: Complemental strand, 5490046 - 5489901
Alignment:
| Q |
46 |
tgctcatgttgaatatccaagaaggcattgaggaatgaaaaggatttcctgagagatcaaggacagaaagtgatgtcatatttaaaaacggtgaagatga |
145 |
Q |
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| T |
5490046 |
tgctcatgttgaacatccaagaaggtattgaggaattaaaatgatttccagagagatcaagcacagaaagtgatgtagaatttaaaaatggtgacgatgg |
5489947 |
T |
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| Q |
146 |
agggagagcaacaagattgcaagaggacaagtgcaactctaacaaa |
191 |
Q |
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| T |
5489946 |
agggagagcgccaagattgcaagaagccaaatgcaattctaacaaa |
5489901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 5476922 - 5476817
Alignment:
| Q |
48 |
ctcatgttgaatatccaagaaggcattgaggaatgaaaaggatttcctgagagatcaaggacagaaagtgatgtcatatttaaaaacggtgaagatgaag |
147 |
Q |
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| T |
5476922 |
ctcatgttgaacagccaagaaggcattgaggtatttaaaggatttccagagagatcaagcacagaaagtggtgtaatatttaaaaatggcgaagttggag |
5476823 |
T |
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| Q |
148 |
ggagag |
153 |
Q |
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| T |
5476822 |
ggagag |
5476817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 5495812 - 5495707
Alignment:
| Q |
62 |
ccaagaaggcattgaggaatgaaaaggatttcctgagagatcaaggacagaaagtgatgtcatatttaaaaacggtgaagatgaagggagagcaacaaga |
161 |
Q |
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| T |
5495812 |
ccaagaaggtatagatgaattaaaaggatttccagagagatcaagcacagaaagtgatgtaatatttaaaaatggtgaagatggtgggagaaaagcaaga |
5495713 |
T |
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| Q |
162 |
ttgcaa |
167 |
Q |
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| T |
5495712 |
ttgcaa |
5495707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 96 - 189
Target Start/End: Complemental strand, 5467239 - 5467146
Alignment:
| Q |
96 |
gagagatcaaggacagaaagtgatgtcatatttaaaaacggtgaagatgaagggagagcaacaagattgcaagaggacaagtgcaactctaaca |
189 |
Q |
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| T |
5467239 |
gagaggtcaagcacataaagtgatgaaatatttaaaaagggtgaagatggagggagtgcagcaagattgcaaaaggacaaatgcaactctaaca |
5467146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 5485084 - 5485000
Alignment:
| Q |
48 |
ctcatgttgaatatccaagaaggcattgaggaatgaaaaggatttcctgagagatcaaggacagaaagtgatgtcatatttaaaaa |
133 |
Q |
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| T |
5485084 |
ctcatgttgaacatccaagaaggtaatgaggaattaaaaggatttccagagagatcaa-cacataaagtgatgtaatatttaaaaa |
5485000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 187
Target Start/End: Complemental strand, 5500862 - 5500722
Alignment:
| Q |
47 |
gctcatgttgaatatccaagaaggcattgaggaatgaaaaggatttcctgagagatcaaggacagaaagtgatgtcatatttaaaaacggtgaagatgaa |
146 |
Q |
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| T |
5500862 |
gctcatgttgaacagccaagaaggtatagtggaattaaaaagatttccagtgagataaagcctggaaagagatgtaatatttagaaatggtgaagctgga |
5500763 |
T |
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| Q |
147 |
gggagagcaacaagattgcaagaggacaagtgcaactctaa |
187 |
Q |
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| T |
5500762 |
gggagtgaagcaagactgcaaaaggacaaatgcaactctaa |
5500722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 5484783 - 5484720
Alignment:
| Q |
124 |
tatttaaaaacggtgaagatgaagggagagcaacaagattgcaagaggacaagtgcaactctaa |
187 |
Q |
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| T |
5484783 |
tatttaaaaatggtgaagacggtggaagagaagcaagattgcaagaggacaaatgcaactctaa |
5484720 |
T |
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