View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_low_3 (Length: 546)
Name: NF15758_low_3
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 14 - 530
Target Start/End: Complemental strand, 49775199 - 49774683
Alignment:
| Q |
14 |
aggaaactatagcagcaacattgtgatctggtgtagcaccgacaagcatcattccaaaaaaggtgaagtatagaaaggtgaagaacatgaagaagagata |
113 |
Q |
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| T |
49775199 |
aggaaactatagcagcaacattgtgatctggtgtagcaccgacaagcatcattccaaaaaaggtgaagtatagaaaggtgaagaacatgaagaagagata |
49775100 |
T |
|
| Q |
114 |
ccaaaagaacttggtaggtgtcctttcaaacccaaccatggtatacactataaccccatatacaaggctctgtatgagtatgtatgggatctcaacagca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49775099 |
ccaaaagaacttggtaggtgtcctttcaaacccaaccatggtatacactataaccccatatacaaggctctgtatgagtatgtatgggatctcaacagca |
49775000 |
T |
|
| Q |
214 |
acctgaatatttcaaatctggtaagttttctaaacagttttcattctctcaacttcatataattagtattcattaattaaaaagtttatctgttaactaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49774999 |
acctgaatatttcaaatctggtaagttttctaaacagttttcattctctcaacttcatataattagtattcattaattaaaaagtttatctgttcactaa |
49774900 |
T |
|
| Q |
314 |
tatttagaataaaccttcaatttagtcactaaactaccatgaacctagctaattagagagataatgataatttaaggataaattgatggtttattcataa |
413 |
Q |
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| T |
49774899 |
tatttagaataaaccttcaatttagtcactaaactaccatgaacctagctaattagagagataatgataatttaaggataaattgatggtttattcataa |
49774800 |
T |
|
| Q |
414 |
aagttaacattccttagccatttcgtgatccagaaactttatgcatacctgtccaaatgcatatggcaatgctgagtacattccagcagccttttctcta |
513 |
Q |
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| T |
49774799 |
aagttaacattccttagccatttcgtgatcaagaaacttaatgcatacctgtccaaatgcatatggcaatgctgagtacattccagcagccttttctcta |
49774700 |
T |
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| Q |
514 |
tagaaaactgttctctc |
530 |
Q |
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||||||||||||||||| |
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| T |
49774699 |
tagaaaactgttctctc |
49774683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 29780191 - 29780138
Alignment:
| Q |
60 |
catcattccaaaaaaggtgaagtatagaaaggtgaagaacatgaagaagagata |
113 |
Q |
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| T |
29780191 |
catcattccataaaaggtgaagtaggtaaaggttaagaacatgaacaagagata |
29780138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 511
Target Start/End: Original strand, 44221701 - 44221753
Alignment:
| Q |
459 |
tacctgtccaaatgcatatggcaatgctgagtacattccagcagccttttctc |
511 |
Q |
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| T |
44221701 |
tacctgtgaaaatgcatatggtaaggcagaatacattccagcagccttttctc |
44221753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 44232519 - 44232575
Alignment:
| Q |
459 |
tacctgtccaaatgcatatggcaatgctgagtacattccagcagccttttctctata |
515 |
Q |
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||||||| ||||||||| || || || ||||||||||||||||| ||||||||||| |
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| T |
44232519 |
tacctgtgaaaatgcatagggtaaggcagagtacattccagcagctttttctctata |
44232575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 530
Target Start/End: Original strand, 2147361 - 2147433
Alignment:
| Q |
458 |
atacctgtccaaatgcatatggcaatgctgagtacattccagcagccttttctctatagaaaactgttctctc |
530 |
Q |
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|||||||| ||| |||||||||| ||||| |||||||| ||||| ||||||| ||||| ||||||||||| |
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| T |
2147361 |
atacctgtgcaagagcatatggcatagctgaatacattcctgcagctctttctctgtagaagactgttctctc |
2147433 |
T |
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