View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15758_low_6 (Length: 484)
Name: NF15758_low_6
Description: NF15758
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15758_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 20 - 470
Target Start/End: Original strand, 6488711 - 6489161
Alignment:
| Q |
20 |
aaaactgccatcatcggtaacaaccatcctccctcccgacgccaatctcgacttccacgacgtcgaaaaactcttttcgcacgtcccaaccaaaaaactt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488711 |
aaaactgccatcatcggtaacaaccatcctccctcccgacgccaatctcgacttccacgacgtcgaaaaactcttttcgcacgtcccaaccaaaaaactt |
6488810 |
T |
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| Q |
120 |
ctcaaatcaactgctgtcctccatgctaccgcggtcgagccaatggttgacctcggtacatggttgttgaggtctgatctcatgcagaccaataatccat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488811 |
ctcaaatcaactgctgtcctccatgctaccgcggtcgagccaatggttgacctcggtacatggttgttgaggtctgatctcatgcagaccaataatccat |
6488910 |
T |
|
| Q |
220 |
taagtaaccttgctatggctaccacacgtgccacttttttcgattatttttgtgctggagaagatgctatcaccgctggaaaaagtattgccgggttgaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6488911 |
taagtaaccttgctatggctaccacacgtgccacttttttcgatcatttttgtgccggagaagatgctatcaccgctggaaaaagtattgccgggttgaa |
6489010 |
T |
|
| Q |
320 |
tgaagccggtttacgtggaatgctggtttatggcgttgaagatgctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgat |
419 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6489011 |
tgaagcaggtttacgtggaatgctggtttatggcgttgaagatgctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgat |
6489110 |
T |
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| Q |
420 |
gtcagcagatcgcttcctccatcttcggtaatctcttctttatttcatctc |
470 |
Q |
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| T |
6489111 |
gtcagcagatcgcttcctccatcttcggtaatctcttctttatttcatctc |
6489161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 265 - 450
Target Start/End: Complemental strand, 6328510 - 6328325
Alignment:
| Q |
265 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
363 |
Q |
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||||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6328510 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6328412 |
T |
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| Q |
364 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
450 |
Q |
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| T |
6328411 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6328325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 265 - 450
Target Start/End: Complemental strand, 6336068 - 6335883
Alignment:
| Q |
265 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
363 |
Q |
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||||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6336068 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6335970 |
T |
|
| Q |
364 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
450 |
Q |
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| T |
6335969 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6335883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 265 - 450
Target Start/End: Complemental strand, 6351053 - 6350868
Alignment:
| Q |
265 |
atttttgtgctggagaagatgctatcaccgctggaaaaagtatt-gccgggttgaatgaagccggtttacgtggaatgctggtttatggcgttgaagatg |
363 |
Q |
| |
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||||||||||||||||||||||||| || |||||||| ||||| | ||| |||||||| || |||||||| ||||| |||| ||| |||||||||| |
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| T |
6351053 |
atttttgtgctggagaagatgctattactgctggaaagagtataaggtctgtt-aatgaagctggcttacgtggcatgcttgtttttggtgttgaagatg |
6350955 |
T |
|
| Q |
364 |
ctcatgataatgctggctgtgatcgcaatctcaaaggttttcttcacaccgttgatgtcagcagatcgcttcctccatcttcggtaa |
450 |
Q |
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| T |
6350954 |
cacatgagaatgatggttgtgatcgtaatcttaaagggtttcttcatactgttgatgttagcaaatcacttcctccttcttctgtaa |
6350868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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