View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15759_high_1 (Length: 580)
Name: NF15759_high_1
Description: NF15759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15759_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 23066406 - 23066654
Alignment:
| Q |
7 |
gttccaacatgtgttggattgcccaatccatattgttaacaaaaattaacattgttataattaaaaagcgaagggaagaaactcattttgttatgttgta |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23066406 |
gttccaacatgtgttggattgcccaatccatattgttaacaaaaattaacattgttataattaaaaagcgaagggaagaaactcattttattatgttgta |
23066505 |
T |
|
| Q |
107 |
caactatagatttagtcgaggtatcaacatatagtccttaactgtcattctcttttgtcaaatgattaagaggataaataaacacagtccctcgtatatg |
206 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||| |
|
|
| T |
23066506 |
caactatagatttagtcgaggtatcgacatatagtccttaactgtcattctcttttgtcaaatgattaagcggataaataaacatagtacctcgtatatg |
23066605 |
T |
|
| Q |
207 |
agttcccaaactactctagtggaatatcaagtagaacaccttttttagc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23066606 |
agttcccaaactactctagtggaatatcaagtagaacaccttttttagc |
23066654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 325 - 571
Target Start/End: Original strand, 23066724 - 23066967
Alignment:
| Q |
325 |
gaatttgattgattgtgtggaatgcactgtacaaatgagtatttatgtgcaaaactcttcttattagccaaacgacaacaagacctacaatgtttatcct |
424 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
23066724 |
gaatttgattgattgtgtgctatgcaccgtacaaatgagtatttatatgcaaaactcttcttattagccaaacgacaa---gacctacaatgtttattct |
23066820 |
T |
|
| Q |
425 |
gactcaactatttgtgaagatattgcgctttagttttccctcactgagggggtatgtggcacctcaagttcgggtgacaactttccattttgcgatgtga |
524 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23066821 |
gactcaactatttgtgaaggtagtgcgctttagttttccctcactgagggggtatgtggcacctcaagttcgggtgacaactttccattttgcgatgtga |
23066920 |
T |
|
| Q |
525 |
tccgttgataaagtccaatatgcacaacatctgttaaagatgttcat |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23066921 |
tccgttgataaagtccaatatgcacaacatctgttaaagatgttcat |
23066967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University