View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15759_high_5 (Length: 383)

Name: NF15759_high_5
Description: NF15759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15759_high_5
NF15759_high_5
[»] chr2 (7 HSPs)
chr2 (1-368)||(13563522-13563888)
chr2 (1-198)||(14203090-14203278)
chr2 (1-128)||(13574601-13574729)
chr2 (113-179)||(7421885-7421952)
chr2 (15-128)||(13571040-13571157)
chr2 (266-368)||(13570807-13570904)
chr2 (266-368)||(13574365-13574462)
[»] chr8 (3 HSPs)
chr8 (96-193)||(3917544-3917647)
chr8 (98-180)||(4219921-4220001)
chr8 (132-168)||(3929928-3929964)
[»] chr1 (1 HSPs)
chr1 (80-144)||(5388858-5388922)


Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 13563888 - 13563522
Alignment:
Q  1 tgccatagcttatattatatcaatcagattttcttttattttgtgtgattgcatggaatgaattggcacaacattgttccaatttatggaacttctgttt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13563888 tgccatagcttatattatatcaatgagattttcttttattttgtgtgattgcatggaatgaattggcacaacattgttccaatttatggaactactgttt 13563789  T
Q  101 tccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtgggaacaatggtattaaaattttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13563788 tccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtgggaacaatggtattaaaattttgc 13563689  T
Q  201 cacagcttagtattaaattttcactatgtgaggttgttgactggtattaatcaaatagaagggatatagtaatatagaggttgacataggaattaaatgt 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13563688 catagcttagtattaaattttcactatgtgaggttgttgactggtattaatcaaatagaagggatatagtaatatagaggttgacataggaattaaatgt 13563589  T
Q  301 gggtttgcatgtggnnnnnnnnnttcacaaaattgaagactgtatgagtgggaacaatagtatttact 368  Q
    ||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||    
T  13563588 gggtttgcatgtgg-aaaaaaaattcacaaaattgaagactgtatgagtgggaacaatagtatttact 13563522  T

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Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 14203278 - 14203090
Alignment:
Q  1 tgccatagcttatattatatcaatcagattttcttttattttgt--gtgattgcatggaatgaattggc-acaacattgttccaatttatggaacttctg 97  Q
    |||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||  |||| ||||||||||||||| |||||        
T  14203278 tgccatagcttatattatatcaatgagattttcttttattttttttgtgattgcatggaatgaattggttacaaaattgttccaatttatagaact---- 14203183  T
Q  98 ttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtgggaacaatggtattaaaattt 197  Q
            |||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |||    
T  14203182 --------aaatgtgaagtgaattaattaaagttgggtttacgtgaggaatattatttttacaaaattgaaactatgtgggagccatgctattaaatttt 14203091  T

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Target: chr2; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 13574729 - 13574601
Alignment:
Q  1 tgccatagcttatattatatcaatcagattttcttttattttgtgtgattgcatggaatgaattgg-cacaacattgttccaatttatggaacttctgtt 99  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||  |||| ||||||| |||||||||||||  ||||    
T  13574729 tgccatagcttatattatatcaatgagattttcttttattttttgtgattgcatggaatgaattggttacaaaattgttctaatttatggaactaatgtt 13574630  T
Q  100 ttccttaaatgtgaagtgaatggattaaa 128  Q
    | |||||||||||||||||||||||||||    
T  13574629 taccttaaatgtgaagtgaatggattaaa 13574601  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 7421952 - 7421885
Alignment:
Q  113 aagtgaatggattaaa-gttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtggga 179  Q
    ||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  7421952 aagtgaatgaattaaaagttgcgtttgcgtgaggaataatatttttacaaaattgaaactatgtggga 7421885  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 128
Target Start/End: Complemental strand, 13571157 - 13571040
Alignment:
Q  15 ttatatcaatcagattttcttttattttgtgtgattgcatggaatgaatt-ggcacaacattgttccaatttatggaacttctgttttcct---taaatg 110  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||| |  |||| ||||||||||||||| |||||  ||  | |||   ||||||    
T  13571157 ttatatcaatgagattttgttttactttgtgtgattgcatggaatgaattagttacaaaattgttccaatttatagaactaatgaataccttaataaatg 13571058  T
Q  111 tgaagtgaatggattaaa 128  Q
    ||||||||||||||||||    
T  13571057 tgaagtgaatggattaaa 13571040  T

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Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 13570904 - 13570807
Alignment:
Q  266 atagtaatatagaggttgacataggaattaaatgtgggtttgcatgtggnnnnnnnnnttcacaaaattgaagactgtatgagtgggaacaatagtattt 365  Q
    ||||||||||| |||||||||||||||||||    ||||||||||||||         |||| |||||||||||||||||||||||||||||||||||||    
T  13570904 atagtaatata-aggttgacataggaattaa----gggtttgcatgtggaaaattattttcataaaattgaagactgtatgagtgggaacaatagtattt 13570810  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 368
Target Start/End: Complemental strand, 13574462 - 13574365
Alignment:
Q  266 atagtaatatagaggttgacataggaattaaatgtgggtttgcatgtggnnnnnnnnnttcacaaaattgaagactgtatgagtgggaacaatagtattt 365  Q
    ||||||||||| |||||||||||||||||||    ||||||||||||||         |||| |||||||||||||||||||||||||||||||||||||    
T  13574462 atagtaatata-aggttgacataggaattaa----gggtttgcatgtggaaaattattttcataaaattgaagactgtatgagtgggaacaatagtattt 13574368  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 3917544 - 3917647
Alignment:
Q  96 tgttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaat-----attatttttacaaaattgaa-actatgtgggaacaatggtat 189  Q
    |||||||||||||||| ||||||||| |||||| |  ||||||||||||||||     |||||||||||||| ||||| ||||||||||||| || ||||    
T  3917544 tgttttccttaaatgttaagtgaatgaattaaattcaggtttgcgtgaggaatactacattatttttacaaagttgaagactatgtgggaaccatagtat 3917643  T
Q  190 taaa 193  Q
    ||||    
T  3917644 taaa 3917647  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 4220001 - 4219921
Alignment:
Q  98 ttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgaggaatattatttttacaaaattgaaactatgtgggaa 180  Q
    |||||||||||||  ||||||||| |||||| |||  ||||||||||||| |||||||| | |||||||||| ||||| ||||    
T  4220001 ttttccttaaatg--aagtgaatgaattaaatttgattttgcgtgaggaaaattattttcaaaaaattgaaaatatgttggaa 4219921  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 3929928 - 3929964
Alignment:
Q  132 gggtttgcgtgaggaatattatttttacaaaattgaa 168  Q
    ||||||| |||||| ||||||||||||||||||||||    
T  3929928 gggtttgagtgaggtatattatttttacaaaattgaa 3929964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 5388922 - 5388858
Alignment:
Q  80 caatttatggaacttctgttttccttaaatgtgaagtgaatggattaaagttgggtttgcgtgag 144  Q
    |||||||| |||||  || |||||||||||| |||||||||| |||||| |||| ||||||||||    
T  5388922 caatttatcgaactaatgatttccttaaatgagaagtgaatgaattaaatttggttttgcgtgag 5388858  T

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