View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15759_high_9 (Length: 270)
Name: NF15759_high_9
Description: NF15759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15759_high_9 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 21327537 - 21327800
Alignment:
| Q |
7 |
gtccacacgtcatttgatatatttcaatatcgagatgtaagtaatgcaacttcatcaagcataatgtttatgaaagctttagtttctgagtcaggccata |
106 |
Q |
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| T |
21327537 |
gtccacacgtcatttgatatatttccatatcgagatgtaagtaatgcaacttcatcaagcataatgtttatgaaagctttagtttctaagtaaggccata |
21327636 |
T |
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| Q |
107 |
gctttgagtcactgttatcatcattggttgtcatctatcataaaaataagcatgaacaattagactttgttattatattagtatcagtattagtattagt |
206 |
Q |
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| T |
21327637 |
gctttgagtcactgttatcatcattggttgccatctatcataaaaataagcatgaacaattagactttgttattatattagtatcagtattagtattagt |
21327736 |
T |
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| Q |
207 |
attactttaactataacgcgtatatttcataacaaaagaatataggctacaagtttaaccagca |
270 |
Q |
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| T |
21327737 |
attactttaactataacgcgtatatttcataacaaaagaatataggctacaagtttaaccagca |
21327800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 38275301 - 38275363
Alignment:
| Q |
97 |
tcaggccatagctttgagtcactgttatcatcattggttgtcatctatcataaaaataagcat |
159 |
Q |
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| T |
38275301 |
tcaggccaaagctttgagtcattgatgtcaacattagttgtcatctatcataaaaataagcat |
38275363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 42600683 - 42600788
Alignment:
| Q |
54 |
aacttcatcaagcataatgtttatgaaagctttagtttctgagtcaggccatagctttgagtcactgttatcatcattggttgtcatctatcataaaaat |
153 |
Q |
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| T |
42600683 |
aacttcatcaaccataatgtcaatgaaagctttagttaccaagtcaggccaaagcattgagtcactgttgtcaacattagatgccatctatcataaacat |
42600782 |
T |
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| Q |
154 |
aagcat |
159 |
Q |
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| T |
42600783 |
aagcat |
42600788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 19512905 - 19513003
Alignment:
| Q |
54 |
aacttcatcaagcataatgtttatgaaagctttagtttctgagtcaggccatagctttgagtcactgttatcatcattggttgtcatctatcataaaaa |
152 |
Q |
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| T |
19512905 |
aacttcatcaaccataatttcgatgaaagctttagttaccaactcaggccaaagtgttgaatcacagttgtcaacattagttgtcatctatcataaaaa |
19513003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 35338307 - 35338209
Alignment:
| Q |
54 |
aacttcatcaagcataatgtttatgaaagctttagtttctgagtcaggccatagctttgagtcactgttatcatcattggttgtcatctatcataaaaa |
152 |
Q |
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| T |
35338307 |
aacttcatcaaccataatgtcaatgaaagttttagttactatgtcaggccaaaacattgagtcactactgtcaacattagttgtcacctatcatgaaaa |
35338209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Complemental strand, 18367732 - 18367634
Alignment:
| Q |
54 |
aacttcatcaagcataatgtttatgaaagctttagtttctgagtcaggccatagctttgagtcactgttatcatcattggttgtcatctatcataaaaa |
152 |
Q |
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| T |
18367732 |
aacttcatcaaccataatttcgatgaaagctttagttaccaactcaggccaaagtgttgaatcacagttgtcaacattagttgtcatctatcataaaaa |
18367634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 152
Target Start/End: Original strand, 36595191 - 36595289
Alignment:
| Q |
54 |
aacttcatcaagcataatgtttatgaaagctttagtttctgagtcaggccatagctttgagtcactgttatcatcattggttgtcatctatcataaaaa |
152 |
Q |
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||||||||||| |||||| | ||||||||||||||| | | |||||||| || |||| |||| ||| ||| |||| |||||||||||||||||||| |
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| T |
36595191 |
aacttcatcaaccataatttcgatgaaagctttagttaccaactcaggccaaagtgttgaatcacagttgtcaacattagttgtcatctatcataaaaa |
36595289 |
T |
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