View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15759_low_11 (Length: 227)
Name: NF15759_low_11
Description: NF15759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15759_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 47946591 - 47946779
Alignment:
| Q |
20 |
gaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttct |
119 |
Q |
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| T |
47946591 |
gaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttct |
47946690 |
T |
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| Q |
120 |
gaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcctgt |
208 |
Q |
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| T |
47946691 |
gaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcctgt |
47946779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 47928019 - 47928203
Alignment:
| Q |
24 |
acaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttctgaat |
123 |
Q |
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| T |
47928019 |
acaggatcttttccatatggagcgtcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaat |
47928118 |
T |
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| Q |
124 |
aatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcctgt |
208 |
Q |
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| T |
47928119 |
aatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcatctccactacccatctgtgttcctgt |
47928203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 24 - 208
Target Start/End: Original strand, 47935453 - 47935637
Alignment:
| Q |
24 |
acaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttctgaat |
123 |
Q |
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| T |
47935453 |
acaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatttgagagcttttgaat |
47935552 |
T |
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| Q |
124 |
aatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcctgt |
208 |
Q |
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| T |
47935553 |
aatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcctgt |
47935637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 205
Target Start/End: Original strand, 47918257 - 47918438
Alignment:
| Q |
24 |
acaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttctgaat |
123 |
Q |
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|||||||||||||||||| || |||| |||| |||||||||||| || |||||| |||| ||||||||||||| ||| ||||| || | || |||| |
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| T |
47918257 |
acaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttctatagcatgtgtacttacaaatgatgggtacttaagtgcttgcgaat |
47918356 |
T |
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| Q |
124 |
aatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcc |
205 |
Q |
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||| || ||||||||| |||||||||||| | ||||||| | | |||| ||||||||||||||||||||||||| |
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| T |
47918357 |
tatctttgattctcacaccacccatgtaacatgcaaccccaaatttattatatgcttcttctccactacccatttgtgttcc |
47918438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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