View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15759_low_13 (Length: 213)
Name: NF15759_low_13
Description: NF15759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15759_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 15 - 196
Target Start/End: Complemental strand, 40332891 - 40332713
Alignment:
| Q |
15 |
aagaagataaccatactgaacaacagcatatggnnnnnnnccagctgcaaaattattatattaacagaaacatctaaatcagcatagtttcaactttgtt |
114 |
Q |
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| T |
40332891 |
aagaagacagccatactgaacaacagcataaggtttttttccagctgcaaaattat---attaacagaaacatctaaatcagcatagtttcaactttgtt |
40332795 |
T |
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| Q |
115 |
tatagattaacttttgttgagcatcatatgaaacaaataaagaagagaattgaagtgatagaaattgaactcacacataatt |
196 |
Q |
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| T |
40332794 |
tatagattgacttttgttgagcatcatatgaaacaaataaagaagagaattgaagtgatagaaattgaactcacacataatt |
40332713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 124 - 193
Target Start/End: Complemental strand, 40386028 - 40385959
Alignment:
| Q |
124 |
acttttgttgagcatcatatgaaacaaataaagaagagaattgaagtgatagaaattgaactcacacata |
193 |
Q |
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| T |
40386028 |
acttttgttgagcattatatgaaacaaataaagaagagagtttaagtgaaagaaattgaactcacacata |
40385959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 40375774 - 40375713
Alignment:
| Q |
131 |
ttgagcatcatatgaaacaaataaagaagagaattgaagtgatagaaattgaactcacacat |
192 |
Q |
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| T |
40375774 |
ttgagcattatatgaaacaaataaagaaaagagttgaagtgaaagaaattgaactcacacat |
40375713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 127
Target Start/End: Complemental strand, 40375872 - 40375815
Alignment:
| Q |
70 |
ttatattaacagaaacatctaaatcagcatagtttcaactttgtttatagattaactt |
127 |
Q |
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| T |
40375872 |
ttatattaatagaaacatctaaatcagcataatttcagctttgtttatagattaactt |
40375815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 40386169 - 40386060
Alignment:
| Q |
15 |
aagaagataaccatactgaacaacagcatatggnnnnnnnccagctgcaaaattattatattaacagaaacatctaaatcagcatagtttcaactttgtt |
114 |
Q |
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||||||| | ||||||||| |||||||||| || |||||||||||||| | ||||| |||||||| |||||||||||||||||| ||||||| |
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| T |
40386169 |
aagaagacagccatactgagcaacagcatagggttttcttccagctgcaaaatttt---attaatagaaacatataaatcagcatagtttcagctttgtt |
40386073 |
T |
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| Q |
115 |
tatagattaactt |
127 |
Q |
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| T |
40386072 |
tatagattaactt |
40386060 |
T |
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