View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15759_low_2 (Length: 448)

Name: NF15759_low_2
Description: NF15759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15759_low_2
NF15759_low_2
[»] chr6 (28 HSPs)
chr6 (16-440)||(4260156-4260579)
chr6 (303-434)||(4256620-4256751)
chr6 (28-215)||(4256896-4257097)
chr6 (299-434)||(4267174-4267309)
chr6 (298-440)||(4516309-4516451)
chr6 (308-440)||(4622140-4622272)
chr6 (331-440)||(4617043-4617152)
chr6 (223-300)||(4267333-4267410)
chr6 (139-215)||(4267451-4267527)
chr6 (302-434)||(4480685-4480817)
chr6 (302-434)||(4504405-4504537)
chr6 (225-300)||(4256779-4256854)
chr6 (301-434)||(4505848-4505981)
chr6 (302-434)||(3171733-3171865)
chr6 (378-432)||(4626019-4626073)
chr6 (313-440)||(4601792-4601919)
chr6 (16-80)||(4267543-4267607)
chr6 (338-434)||(4613726-4613822)
chr6 (320-434)||(4490363-4490477)
chr6 (340-434)||(4592261-4592355)
chr6 (298-394)||(4299788-4299884)
chr6 (313-441)||(4560509-4560637)
chr6 (26-92)||(4289128-4289194)
chr6 (302-432)||(4461115-4461245)
chr6 (326-440)||(4570988-4571102)
chr6 (377-432)||(4585703-4585758)
chr6 (208-251)||(4622020-4622063)
chr6 (331-434)||(4568074-4568180)
[»] scaffold0477 (1 HSPs)
scaffold0477 (299-440)||(4688-4829)
[»] chr5 (7 HSPs)
chr5 (299-432)||(24102988-24103121)
chr5 (331-432)||(28000109-28000210)
chr5 (148-213)||(24109255-24109320)
chr5 (210-262)||(24102909-24102961)
chr5 (210-262)||(24109356-24109408)
chr5 (25-95)||(24041260-24041329)
chr5 (156-215)||(24102821-24102880)
[»] scaffold0288 (1 HSPs)
scaffold0288 (312-434)||(3727-3849)
[»] chr8 (1 HSPs)
chr8 (331-432)||(1674247-1674348)
[»] chr7 (1 HSPs)
chr7 (311-440)||(3086421-3086550)
[»] chr3 (1 HSPs)
chr3 (331-438)||(1281135-1281242)


Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 4260579 - 4260156
Alignment:
Q  16 caggtccatagtaaataatgtgcatgtttctgtcacaattatgtacccctgtgcagattcttaaacaactaaaacctttaagatatgatggctcctatta 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4260579 caggtccatagtaaataatgtgcatgtttctgccacaattatgtacccctgtgcagattcttaaacaaccaaaacctttaagatatgatggctcctatta 4260480  T
Q  116 atcacagctttatgatatatgtcatttgtatgtatgcaaatgaaataaaaataacactagtaactgaatatcatacaattatatgagacattatttatat 215  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4260479 atcacagctttatgatatatgtcatttgtatatatgcaaatgaaataaaaataacactagtaactgaatttcatacaattatatgagacattatttatat 4260380  T
Q  216 ggtttacattttaaatataacaagcacctcacactaaatgcatcatannnnnnnacaataaaacaaattcaagaggagattacactttaatctagtattg 315  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  4260379 ggtttacattttaaatataacaagcacctca-actaaatgcatcttatttttttacaataaaacaaattcaagaggagattacactttaatctagtattg 4260281  T
Q  316 tttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttt 415  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4260280 tttgagcatgacctgcttaataactttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatgaccttt 4260181  T
Q  416 tgcctcatcttctttccttcatctc 440  Q
    |||||||||||||||||||| ||||    
T  4260180 tgcctcatcttctttccttcttctc 4260156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 303 - 434
Target Start/End: Complemental strand, 4256751 - 4256620
Alignment:
Q  303 taatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaa 402  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||| |||||||    
T  4256751 taatctagtattgtttaagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaa 4256652  T
Q  403 ctccatgaccttttgcctcatcttctttcctt 434  Q
     |||||||||||||||||||||||||||||||    
T  4256651 ttccatgaccttttgcctcatcttctttcctt 4256620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 4257097 - 4256896
Alignment:
Q  28 aaataatgtgcatgtttctgtcacaattatgtacccctgtgcagattcttaaacaactaaaacctttaagatatgatggctcctattaatcacagcttta 127  Q
    |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||     
T  4257097 aaataatgtgcatgtttctgccactattatgtacccctatgcagattcttaaactaccaaaacctttaacatatgatggctcctattaatcacagctttc 4256998  T
Q  128 tg--------at------atatgtcatttgtatgtatgcaaatgaaataaaaataacactagtaactgaatatcatacaattatatgagacattatttat 213  Q
     |        ||      ||||  ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  4256997 aggccaacaaataccatcatattccatttgtatatatgcaaatgaaagaaaaataacactagtaactgaatttcatacaattatatgaaacattatttat 4256898  T
Q  214 at 215  Q
    ||    
T  4256897 at 4256896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 299 - 434
Target Start/End: Complemental strand, 4267309 - 4267174
Alignment:
Q  299 actttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctct 398  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||  ||||| |||||   || || |||||||| |||||||||||||    
T  4267309 acttcaatctagtattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctct 4267210  T
Q  399 tcaactccatgaccttttgcctcatcttctttcctt 434  Q
    ||||||||| ||| |||||| ||||| | |||||||    
T  4267209 tcaactccaagacattttgcttcatcatatttcctt 4267174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 298 - 440
Target Start/End: Original strand, 4516309 - 4516451
Alignment:
Q  298 cactttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctc 397  Q
    |||||||||||| | |||||||||||  |||| |||||| ||||| ||||||||||   ||||| |||||  ||| || |||| ||||||||||||| ||    
T  4516309 cactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgccttcttc 4516408  T
Q  398 ttcaactccatgaccttttgcctcatcttctttccttcatctc 440  Q
    ||||| |||||| |||||||||||||||||||||||| |||||    
T  4516409 ttcaattccatggccttttgcctcatcttctttcctttatctc 4516451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 308 - 440
Target Start/End: Original strand, 4622140 - 4622272
Alignment:
Q  308 tagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactcca 407  Q
    ||||||||||| |||||||||| |||||||||||||||||||||  |  ||||| |||||   ||||||||  |||| |||||||||  |||||||||||    
T  4622140 tagtattgtttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactcca 4622239  T
Q  408 tgaccttttgcctcatcttctttccttcatctc 440  Q
    || ||||||| |||||||||||||||| |||||    
T  4622240 tggccttttgtctcatcttctttcctttatctc 4622272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 331 - 440
Target Start/End: Original strand, 4617043 - 4617152
Alignment:
Q  331 cttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttcttt 430  Q
    |||||||||||||| |||||||||  ||||| |||||  ||| || |||||||||||||||||| |||||||||||||| |||||||| |||| ||||||    
T  4617043 cttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatggccttttgcttcattttcttt 4617142  T
Q  431 ccttcatctc 440  Q
    |||| |||||    
T  4617143 cctttatctc 4617152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 300
Target Start/End: Complemental strand, 4267410 - 4267333
Alignment:
Q  223 attttaaatataacaagcacctcacactaaatgcatcatannnnnnnacaataaaacaaattcaagaggagattacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  4267410 attttaaatataacaagcacctcacactaaatgcatcatattttttgacaataaaacaaattcaagaggagattacac 4267333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 4267527 - 4267451
Alignment:
Q  139 atttgtatgtatgcaaatgaaataaaaataacactagtaactgaatatcatacaattatatgagacattatttatat 215  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  4267527 atttgtatatatgaaaatgaaagaaaaataacactagtaactgaatttcatacaattatatgaaacattatttatat 4267451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 434
Target Start/End: Original strand, 4480685 - 4480817
Alignment:
Q  302 ttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttca 401  Q
    |||||||| | |||||| |||| ||||| |||||| |||||||||||||||||  ||||| |||||   || || |||| |||||||||| || ||||||    
T  4480685 ttaatctaattttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttca 4480784  T
Q  402 actccatgaccttttgcctcatcttctttcctt 434  Q
    |||||||| |||||||| |||||||||||||||    
T  4480785 actccatggccttttgcttcatcttctttcctt 4480817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 434
Target Start/End: Complemental strand, 4504537 - 4504405
Alignment:
Q  302 ttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttca 401  Q
    |||||||| |||| ||| |||| ||| | |||||| |||||||||||||||||  ||||| |||||    | || |||| ||||||||||||| ||||||    
T  4504537 ttaatctaatattttttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttca 4504438  T
Q  402 actccatgaccttttgcctcatcttctttcctt 434  Q
    |||||||| ||||||||||||||||||||||||    
T  4504437 actccatggccttttgcctcatcttctttcctt 4504405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 300
Target Start/End: Complemental strand, 4256854 - 4256779
Alignment:
Q  225 tttaaatataacaagcacctcacactaaatgcatcatannnnnnnacaataaaacaaattcaagaggagattacac 300  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  4256854 tttaaatataacaagcacctcacactaaatgcatcatattttttgacaataaaacaaattcaagaggagattacac 4256779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 434
Target Start/End: Original strand, 4505848 - 4505981
Alignment:
Q  301 tttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttc 400  Q
    ||||||||| | |||||| ||||  |||| |||||||||||||||||||||||| |||||| |||||   || || || | ||||| |||| || | |||    
T  4505848 tttaatctaattttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttc 4505947  T
Q  401 aactccatgaccttttgcctcatcttctttcctt 434  Q
    |||||||||||||||| ||||||||| |||||||    
T  4505948 aactccatgacctttttcctcatcttgtttcctt 4505981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 434
Target Start/End: Original strand, 3171733 - 3171865
Alignment:
Q  302 ttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttca 401  Q
    |||||||| |||||||| |||| ||||| |||||| ||||| |||||||||||  ||||| |||||      || || | ||||||||||||| ||||||    
T  3171733 ttaatctaatattgtttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttca 3171832  T
Q  402 actccatgaccttttgcctcatcttctttcctt 434  Q
    |||||||| || |||||||||||||||||||||    
T  3171833 actccatggccctttgcctcatcttctttcctt 3171865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 378 - 432
Target Start/End: Original strand, 4626019 - 4626073
Alignment:
Q  378 tgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttcc 432  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  4626019 tgttctcctctgccttcttcttcaactccatggccttttgcctcatcttctttcc 4626073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 313 - 440
Target Start/End: Original strand, 4601792 - 4601919
Alignment:
Q  313 ttgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgacc 412  Q
    |||||| ||||  |||| ||||||||||||||||| |||| |  ||||| |||||  | | || ||| |||||| |||| || |||||||||||||| ||    
T  4601792 ttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatggcc 4601891  T
Q  413 ttttgcctcatcttctttccttcatctc 440  Q
    ||||||||||||||||| |||| |||||    
T  4601892 ttttgcctcatcttcttgcctttatctc 4601919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 4267607 - 4267543
Alignment:
Q  16 caggtccatagtaaataatgtgcatgtttctgtcacaattatgtacccctgtgcagattcttaaa 80  Q
    ||||||||| |||||||||||||||||||||| |||  |||||||||||| | ||||||||||||    
T  4267607 caggtccatggtaaataatgtgcatgtttctgccactgttatgtacccctatacagattcttaaa 4267543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 434
Target Start/End: Complemental strand, 4613822 - 4613726
Alignment:
Q  338 actttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttcctt 434  Q
    |||||||||||||||||  ||||| ||||   ||| || |||| ||||||||||||| |||||||||| ||  ||||||||||||| ||||||||||    
T  4613822 actttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttcaactcaattgccttttgcctcattttctttcctt 4613726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 434
Target Start/End: Complemental strand, 4490477 - 4490363
Alignment:
Q  320 agcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttttgcc 419  Q
    |||||||| | |||||| |||||||||||||||||  |||||  ||||    | || |||| |||| |||||||| ||||||||||| |  |||||||||    
T  4490477 agcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttttgcc 4490378  T
Q  420 tcatcttctttcctt 434  Q
    |||||||||||||||    
T  4490377 tcatcttctttcctt 4490363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 434
Target Start/End: Original strand, 4592261 - 4592355
Alignment:
Q  340 tttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttcctt 434  Q
    |||||||||||||||  ||||| ||||    || || |||||||||||||||||| |||||||||| ||  |||||| |||||||||||||||||    
T  4592261 tttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttctttcctt 4592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 4299884 - 4299788
Alignment:
Q  298 cactttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttc 394  Q
    ||||||| |||| |||||||| ||||  |||| ||||||||||||||||||||||||  | ||| |||||  |||  | ||||||||||||||||||    
T  4299884 cactttattctaatattgtttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc 4299788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 441
Target Start/End: Original strand, 4560509 - 4560637
Alignment:
Q  313 ttgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgacc 412  Q
    |||||| ||||  |||| |||||| ||||| |||||||||||  ||||| ||||    || || |||| | |||| |||||  |||||| ||||||| ||    
T  4560509 ttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctccatggcc 4560608  T
Q  413 ttttgcctcatcttctttccttcatctca 441  Q
    |||||||||||||||||||||| ||||||    
T  4560609 ttttgcctcatcttctttcctttatctca 4560637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Complemental strand, 4289194 - 4289128
Alignment:
Q  26 gtaaataatgtgcatgtttctgtcacaattatgtacccctgtgcagattcttaaacaactaaaacct 92  Q
    |||||||||||||||||||||| ||  ||||| ||| ||| ||||||||||||||| || |||||||    
T  4289194 gtaaataatgtgcatgtttctgccattattatttactcctatgcagattcttaaactaccaaaacct 4289128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 302 - 432
Target Start/End: Original strand, 4461115 - 4461245
Alignment:
Q  302 ttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttca 401  Q
    |||||||| | |||||| |||| ||| | |||||| ||||||||||||||| |  |||||  |||    || ||||| | ||||||  ||||| |||| |    
T  4461115 ttaatctaattttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttga 4461214  T
Q  402 actccatgaccttttgcctcatcttctttcc 432  Q
    | |||||||||||||||||||||||||||||    
T  4461215 attccatgaccttttgcctcatcttctttcc 4461245  T

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Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 326 - 440
Target Start/End: Original strand, 4570988 - 4571102
Alignment:
Q  326 acctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatct 425  Q
    |||| |||||| ||||| |||||||||||  ||||| |||||   || || |||| |||||| |||||| |||||| |||||| |  |||| ||||||||    
T  4570988 acctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctccattatatttttcctcatct 4571087  T
Q  426 tctttccttcatctc 440  Q
    ||||||||| |||||    
T  4571088 tctttcctttatctc 4571102  T

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Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 4585703 - 4585758
Alignment:
Q  377 gtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttcc 432  Q
    |||| |||||| |||||| |||||||||| ||  ||||||||||||||||||||||    
T  4585703 gtgtcctcctccgccttcttcttcaactcgattgccttttgcctcatcttctttcc 4585758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 4622020 - 4622063
Alignment:
Q  208 atttatatggtttacattttaaatataacaagcacctcacacta 251  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||    
T  4622020 atttatatggcttagattttaaatataactagcacctcacacta 4622063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 434
Target Start/End: Original strand, 4568074 - 4568180
Alignment:
Q  331 cttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgc---cttcctcttcaactccatgaccttttgcctcatcttc 427  Q
    |||||| |||||||||||||||||  ||||| || ||   || || |||| || ||||||   |||| |||||||||||| | ||||||||||||||||     
T  4568074 cttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatcttt 4568173  T
Q  428 tttcctt 434  Q
    |||||||    
T  4568174 tttcctt 4568180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 299 - 440
Target Start/End: Complemental strand, 4829 - 4688
Alignment:
Q  299 actttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctct 398  Q
    |||||||||||| ||||||| |||||||||| |||||| |||||||||||||||||  ||||| | |||   |  ||||||||||||||||||||| |||    
T  4829 actttaatctagcattgtttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttct 4730  T
Q  399 tcaactccatgaccttttgcctcatcttctttccttcatctc 440  Q
    ||||||||||| ||||||||||||||||| |||||| |||||    
T  4729 tcaactccatggccttttgcctcatcttcattcctttatctc 4688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 432
Target Start/End: Original strand, 24102988 - 24103121
Alignment:
Q  299 actttaatctagtattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctct 398  Q
    |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||  ||||| |||||   |  || |||||||| ||||||||| |||    
T  24102988 actttaatctagaattgtttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttct 24103087  T
Q  399 tcaactccatgaccttttgcctcatcttctttcc 432  Q
    | ||||||| |||||||||| ||||| |||||||    
T  24103088 tgaactccaagaccttttgcttcatcgtctttcc 24103121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 432
Target Start/End: Complemental strand, 28000210 - 28000109
Alignment:
Q  331 cttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttcttt 430  Q
    |||||| |||||||||||||||||  ||||| |||||  ||| || |||||||||||||||||  |||||||||||||| |||||||||||||||| |||    
T  28000210 cttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatggccttttgcctcatctttttt 28000111  T
Q  431 cc 432  Q
    ||    
T  28000110 cc 28000109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 148 - 213
Target Start/End: Original strand, 24109255 - 24109320
Alignment:
Q  148 tatgcaaatgaaataaaaataacactagtaactgaatatcatacaattatatgagacattatttat 213  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| | |||||||| |||||||||||    
T  24109255 tatgcaaatgaaacaaaaataacactagtaactgaatttcataaagttatatgaaacattatttat 24109320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 24102909 - 24102961
Alignment:
Q  210 ttatatggtttacattttaaatataacaagcacctcacactaaatgcatcata 262  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  24102909 ttatatggtttacattttaaatagaactagcacctcacactaaatgcatcata 24102961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 210 - 262
Target Start/End: Original strand, 24109356 - 24109408
Alignment:
Q  210 ttatatggtttacattttaaatataacaagcacctcacactaaatgcatcata 262  Q
    |||||||| |||||||||||||||||| ||||||||||||||||| |||||||    
T  24109356 ttatatggcttacattttaaatataaccagcacctcacactaaatacatcata 24109408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 24041260 - 24041329
Alignment:
Q  25 agtaaataatgtgcatgtttctgtcacaattatgtacccctgtgcagattcttaaacaactaaaaccttta 95  Q
    ||||||||||||||||||||||| ||| ||||||||||||  |||||||||| |||| || ||||||||||    
T  24041260 agtaaataatgtgcatgtttctgccactattatgtacccc-atgcagattctaaaactaccaaaaccttta 24041329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 24102821 - 24102880
Alignment:
Q  156 tgaaataaaaataacactagtaactgaatatcatacaattatatgagacattatttatat 215  Q
    ||||| ||||||||||||||||| |||||  |||||||||||| || |||||||||||||    
T  24102821 tgaaagaaaaataacactagtaattgaattccatacaattatacgaaacattatttatat 24102880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 434
Target Start/End: Complemental strand, 3849 - 3727
Alignment:
Q  312 attgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgac 411  Q
    ||||||| ||||  |||| ||||||||||||||||| ||||||  |||||  ||||  ||| || |||||||||||||||||| |||| ||||||| | |    
T  3849 attgtttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggc 3750  T
Q  412 cttttgcctcatcttctttcctt 434  Q
    |||||||||||||||||||||||    
T  3749 cttttgcctcatcttctttcctt 3727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 331 - 432
Target Start/End: Original strand, 1674247 - 1674348
Alignment:
Q  331 cttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttcttt 430  Q
    |||||| |||||||||||||||||  ||||| |||||  ||| || |||||||||||||||||| ||||||| |||||| |||||||||||||||| |||    
T  1674247 cttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatggccttttgcctcatctttttt 1674346  T
Q  431 cc 432  Q
    ||    
T  1674347 cc 1674348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 440
Target Start/End: Original strand, 3086421 - 3086550
Alignment:
Q  311 tattgtttgagcatgacctacttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatga 410  Q
    |||| ||| |||| ||||| ||||||||||||||||||||||||  ||||| |||||      ||||||||||| ||||| ||| |||| |||||   ||    
T  3086421 tattttttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcga 3086520  T
Q  411 ccttttgcctcatcttctttccttcatctc 440  Q
    | |||||||||||||||||||||| |||||    
T  3086521 cattttgcctcatcttctttcctttatctc 3086550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 438
Target Start/End: Original strand, 1281135 - 1281242
Alignment:
Q  331 cttaataactttgtccaagttcatcaatgaataaccagatgggctggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttcttt 430  Q
    |||||| |||||||| ||||||||  ||||| |||||   || || ||||||||||| |||  | ||||||| |||||| ||||||  ||||| ||||||    
T  1281135 cttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatggccttttctctcatattcttt 1281234  T
Q  431 ccttcatc 438  Q
    ||||||||    
T  1281235 ccttcatc 1281242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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