View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15759_low_7 (Length: 279)
Name: NF15759_low_7
Description: NF15759
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15759_low_7 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4260178 - 4259918
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4260178 |
cctcatcttctttccttcttctcctgacataatttcattgatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
4260079 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
4260078 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacacaacattggaacttcggcacaaatgctttcaatggttgagttccatc |
4259979 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4259978 |
cgcaatgagttaagaatccaccaactgaagagtggttcagtacttgctcttgcggacacca |
4259918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4256636 - 4256357
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| |||||| ||||| | |||||| ||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4256636 |
cctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacattagtattgatttcaattccaatctcccat |
4256537 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttgg-ctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccat |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4256536 |
tcgctacaaataaatctacagtttgttggtctgatcagcaaaaaatggccaacacaacattggaactccggcacaaatgctttcaatggttgagttccat |
4256437 |
T |
|
| Q |
200 |
ccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaaaccgcgattggtcctct |
279 |
Q |
| |
|
|| ||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
4256436 |
cctcaatgagtcaagaatccaccaactgaagagtggttcagtacttgctcttgcggacaccaactctcgattagtcctct |
4256357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 4622251 - 4622520
Alignment:
| Q |
2 |
ctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccatt |
101 |
Q |
| |
|
|||||||||||||||| ||||| ||||| | |||||| ||||| |||| |||||| |||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4622251 |
ctcatcttctttcctttatctcccgacatcaattcattgatcagattcgacacctcctctcttttcacattagtattgatttcgattccaatctcccatg |
4622350 |
T |
|
| Q |
102 |
cgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatcc |
201 |
Q |
| |
|
|| || ||| ||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||| ||||| |||||||| |||||||||||||||| |
|
|
| T |
4622351 |
aattgcagatatatctacagtttgttggctgatcagcgaaaaatggccaacacagcattgaaactccagcacatatgctttcggtggttgaattccatcc |
4622450 |
T |
|
| Q |
202 |
gcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaaaccgcgatt |
271 |
Q |
| |
|
||||||| ||||||| ||||| || || |||||| |||||| |||||| ||||||||| | |||||| |
|
|
| T |
4622451 |
acaatgagtcaagaatccaccaattgcagggtggttaagtacttcctcttgtggacaccaacctgcgatt |
4622520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 46 - 261
Target Start/End: Original strand, 4461276 - 4461491
Alignment:
| Q |
46 |
cttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaat |
145 |
Q |
| |
|
|||| |||||||||| || ||||||| ||| ||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||||| |||| ||| |
|
|
| T |
4461276 |
cttctccacctcatccctcttcacatctttatcgatttcaagtccaatctcccatttgttgcaaataaatctacagtttgctggctgatcaccaaagaat |
4461375 |
T |
|
| Q |
146 |
gaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtactt |
245 |
Q |
| |
|
| |||||||||||| || ||||| ||||| ||||||||| |||||||||||||||| ||||||| ||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
4461376 |
ggccaacacaacatcggcactccagcacatatgctttcagtggttgaattccatccacaatgagtcaagaatccaccaattgaagggtggttcagtactt |
4461475 |
T |
|
| Q |
246 |
gctcttgcggacacca |
261 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4461476 |
gctcttgcggacacca |
4461491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4626059 - 4626319
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||| | ||||||| ||| | | |||| ||||| ||| | ||| | || || |||||||||| || ||||| ||||||||||||||| |
|
|
| T |
4626059 |
cctcatcttctttccgttatctcctgccatcaatgcattgatcagtttctctaccccctccctcttcacattagcatcgatttccattccaatctcccat |
4626158 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || |||||| ||||||| ||||||||||||||||||||| || |||||||| |||||||||||| || || ||||||||||||||||| ||||||| |
|
|
| T |
4626159 |
tcattgcaaatatatctacaatttgttggctgatcagcaaaatttggccaacacagcattggaactccagcgcatatgctttcaatggttgagttccatc |
4626258 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
| ||||||| |||||||| ||||| ||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
4626259 |
cacaatgagttaagaatccaccaattgaaggatggttcagtactttctcttgcggacacca |
4626319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 262
Target Start/End: Original strand, 4563822 - 4564080
Alignment:
| Q |
4 |
catcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcg |
103 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||| | || ||| ||||||| ||||| || ||||| |||| ||||| || |||||||||||||| |
|
|
| T |
4563822 |
catcttctttcctttctctcctgacatcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatctcccattca |
4563921 |
T |
|
| Q |
104 |
ttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgc |
203 |
Q |
| |
|
|| |||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||| |
|
|
| T |
4563922 |
ttgtaaataagtctacagtttgttggctgatcaccaaagaatggccaacacaacattggaactccagcacatatgctttcagtggttgagttccatccgc |
4564021 |
T |
|
| Q |
204 |
aatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaa |
262 |
Q |
| |
|
|||||| ||||||| |||| ||||| ||||||| ||||| ||| || ||||||||| |
|
|
| T |
4564022 |
aatgagtcaagaatccgccaattgaagggtggttcaatactttctcctgtggacaccaa |
4564080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 4585744 - 4586014
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||| | ||||| ||| | |||||| | || |||| ||||||| ||||| |||||||| || | || ||| || |||||||||||| |
|
|
| T |
4585744 |
cctcatcttctttccattctctcccaccatcaattcattgaccaacttctccacctcctctctcttcacattggtgtcaacttccatcccaatctcccat |
4585843 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
4585844 |
tcattgcaaataattctacagtttgttggctgatcagcaatgaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatc |
4585943 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaaaccgcgatt |
271 |
Q |
| |
|
| || |||| ||||||| ||||| ||||| ||||||| ||||||||||||||| |||||| |||||||| |
|
|
| T |
4585944 |
cacagtgagtcaagaatccaccaattgaagggtggttcaatacttgctcttgcgggcaccaacccgcgatt |
4586014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4574416 - 4574677
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||||| | |||||| | ||| ||| ||||||| || || || |||||||||| ||||| |||||||||||||| |
|
|
| T |
4574416 |
cctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttccaatctcccat |
4574515 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || |||||| |||| ||||||| ||||||||| | |||||||| |||||| |||||||||||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
4574516 |
tcattgcaaatatatctgcagtttgctggctgatccgaaaaaaatggccaacataacattggaactccagcacatatgctttcagtggttgagttccatc |
4574615 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaa |
262 |
Q |
| |
|
||||||||| ||||||| ||| |||||| ||||||| ||||| |||||| ||||||||| |
|
|
| T |
4574616 |
cgcaatgagtcaagaatccaccgactgaaaggtggttcaatactttctcttgtggacaccaa |
4574677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 56 - 238
Target Start/End: Complemental strand, 4267135 - 4266953
Alignment:
| Q |
56 |
tcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacaca |
155 |
Q |
| |
|
|||||||| |||||||| ||||| ||||| | ||||||||||||||| | |||||||||||||||||||||||||||||| |||| |||| |||||||| |
|
|
| T |
4267135 |
tcatctctcttcacatttgtattgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttggctgatcaccaaagaatggccaacaca |
4267036 |
T |
|
| Q |
156 |
acattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttc |
238 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||| |||| ||||||| |
|
|
| T |
4267035 |
acattggcactccagcacatatgctttcagtggttgaattccatccgcaatgagtcaagaatccaccaatcgaagggtggttc |
4266953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 44 - 261
Target Start/End: Original strand, 4469954 - 4470171
Alignment:
| Q |
44 |
agcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaa |
143 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||| ||||||| ||||||||||||||| || |||||||||||||| |||| | |||||||| |||| | |
|
|
| T |
4469954 |
agcttctccacctcatctctcttcacatctttatcgatttcaagtccaatctcccattcattgcaaataaatctacaatttgctagctgatcaccaaaga |
4470053 |
T |
|
| Q |
144 |
atgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtac |
243 |
Q |
| |
|
||| ||||||||||||||| ||||| || || ||||||||| ||||||| |||||||||||||||| ||||||| ||| | ||||| ||||||| |||| |
|
|
| T |
4470054 |
atggccaacacaacattggcactccagcgcatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgattgaagggtggttcagtac |
4470153 |
T |
|
| Q |
244 |
ttgctcttgcggacacca |
261 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
4470154 |
ttgctcttgaggacacca |
4470171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 4560614 - 4560875
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| |||| ||||| | |||||| | ||| ||| |||| || || || || ||||| |||| |||||| ||||||||| |||| |
|
|
| T |
4560614 |
cctcatcttctttcctttatctcaggacatcaattcattgaccagtttctccacgtcctccctctttacatttgtatcaatttcgtttccaatcttccat |
4560713 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || |||||| |||| ||||||| ||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
4560714 |
tcattgcaaatatatcttcagtttgctggctgatctgcaaaaaatggccaacacaacattggaactccagcacatatgctttcagtggttgagttccatc |
4560813 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaa |
262 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | ||||||| ||||| |||||| ||||||||| |
|
|
| T |
4560814 |
cgcaatgagtcaagaatccaccgactgatgggtggttcaatactttctcttgtggacaccaa |
4560875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 4601897 - 4602114
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
|||||||||||| |||| ||||| | || | |||||| ||||||||||||| ||| ||||| |||||||| |||| ||||| || |||||||||||| |
|
|
| T |
4601897 |
cctcatcttcttgcctttatctccggctatcacttcattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccataccaatctcccat |
4601996 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |||||||| | |||||||||||| || ||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
4601997 |
tcattacaaataaatctacagtttgttggctgatcggcaaaaaaaggccaacacaacatcggcactccagcacatatgctttcagtggttgagttccatc |
4602096 |
T |
|
| Q |
201 |
cgcaatgagctaagaatc |
218 |
Q |
| |
|
| ||||||| ||||||| |
|
|
| T |
4602097 |
cacaatgagtcaagaatc |
4602114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4516429 - 4516689
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||| ||||||||| ||||||| ||||| |||||||| |||| |||||| ||||||||||||| |
|
|
| T |
4516429 |
cctcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcctctctcttcacattggtatcaatttctgctccaatctcccat |
4516528 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || |||||| |||| || ||||||||||| ||||||||||| | ||||||||||||||| ||||||||||| |||||||| || || || ||||||| |
|
|
| T |
4516529 |
tcattgcaaatatatctgcaatttgttggctgctcagcaaaaaaaggccaacacaacattggtactccggcacagatgctttccattgtggagttccatc |
4516628 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
| ||||||| ||||||| |||||||||| |||||| |||| ||||||||||||||| |
|
|
| T |
4516629 |
cacaatgagtcaagaatcctccaactgaaggatggttcaacactttctcttgcggacacca |
4516689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4592339 - 4592599
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||| || || ||| ||||||| ||||| || ||||| |||| |||||| || |||||||||||| |
|
|
| T |
4592339 |
cctcatcttctttcctttctctcccaccatcaattcattgataagtttctccacctcctctctctttacattcgtatcaatttccatcccaatctcccat |
4592438 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || |||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||| ||| ||||| || |||||| ||||||| ||||||| |
|
|
| T |
4592439 |
tcattgtaaataagtctacagtttgttggctgatcactaaagaatggccaacacaacattggaattccagcacatatactttcagtggttgagttccatc |
4592538 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
| ||||||| ||||||| ||||| ||||| |||||| |||||||||||| |||||||| |
|
|
| T |
4592539 |
cacaatgagtcaagaatccaccaattgaagggtggtttaatacttgctcttgaggacacca |
4592599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4598279 - 4598539
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| | ||| || | ||||||| ||||||| ||||| ||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
4598279 |
cctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacattagtttcaattttgattccaatctcccat |
4598378 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || |||||| |||| ||||| | | ||||||| || ||||| | |||||||||||||| ||||||||||| || |||||| ||||||| ||||||| |
|
|
| T |
4598379 |
tcattgcaaatatatctgcagttggcttgctgatccgcgaaaaagggacaacacaacattggcactccggcacatatactttcagtggttgagttccatc |
4598478 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
4598479 |
cgcaatgagttaagaatccaccaattgaaggatggtttaatacttgctcttgcagacacca |
4598539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 218
Target Start/End: Original strand, 4617163 - 4617347
Alignment:
| Q |
34 |
ttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctga |
133 |
Q |
| |
|
|||||| |||||||| |||| ||| ||||| |||||||| |||| ||||| || |||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
4617163 |
ttcattgatcagctttgccaactcctctctcttcacattcgtatcgatttccataccaatctcccattcattacaaataaatctacagtctgttggctgg |
4617262 |
T |
|
| Q |
134 |
tcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatc |
218 |
Q |
| |
|
|| |||||||||| ||||||||||||||| ||||| || || || |||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
4617263 |
tcggcaaaaaatggccaacacaacattggcactccagcgcatatactttcagtggttgaattccatccgcaatgagtcaagaatc |
4617347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 53 - 271
Target Start/End: Original strand, 4557285 - 4557503
Alignment:
| Q |
53 |
acctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaac |
152 |
Q |
| |
|
||||||||||| |||||||| || | |||||| || |||||||||||| || |||||| |||| ||||||| |||||||||||||||||||| ||||| |
|
|
| T |
4557285 |
acctcatctctcttcacattggtgtcaatttccatgccaatctcccatgtattgcaaatatatctgcagtttgctggctgatcagcaaaaaatggccaac |
4557384 |
T |
|
| Q |
153 |
acaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttg |
252 |
Q |
| |
|
|||||||||||||||| ||| | ||||||||| ||||||| |||||||| ||||||| ||||||| ||||| ||||| ||||| |||||||||||| |
|
|
| T |
4557385 |
acaacattggaactccagcagatatgctttcagtggttgagttccatccacaatgagtcaagaatccaccaattgaaggatggtttaatacttgctcttg |
4557484 |
T |
|
| Q |
253 |
cggacaccaaaccgcgatt |
271 |
Q |
| |
|
||| ||||| |||||||| |
|
|
| T |
4557485 |
cgggcaccagcccgcgatt |
4557503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 4505965 - 4506194
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||| | ||||||| | || | ||||| ||||||||||||| |||||| |||||||||||| || |
|
|
| T |
4505965 |
cctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctctacattttctctattcacattagtatcaatttcgattccaatctccaat |
4506064 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || ||||||||||||||||||||||| |||||| |||| || | |||||||| |||||| ||||| || || ||||||||| ||||||| ||||||| |
|
|
| T |
4506065 |
tcattgcaaataaatctacagtttgttggttgatcaccaaagaacggccaacacagcattggcactccagcgcatatgctttcagtggttgagttccatc |
4506164 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaag |
230 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| |
|
|
| T |
4506165 |
cgcaatgagtcaagaatccaccaattgaag |
4506194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 4579540 - 4579800
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||| ||| ||||| ||| | |||||| | ||||||| ||||||| ||||| ||||||||||| | |||||||||||||| | |||| |
|
|
| T |
4579540 |
cctcatcttctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctcttcacattagtgtcgatttcaattccaattttccat |
4579639 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || | | |||| ||| || ||| |||||||| ||||||| ||||||||||||||||||||| ||| | ||||||||| || |||| ||||||| |
|
|
| T |
4579640 |
gtattgcataaatatctgcagcttactgggtgatcagcgaaaaatggccaacacaacattggaactccagcagatatgctttcagtgattgagttccatc |
4579739 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
4579740 |
cgcaatgagtcaagaatccaccaattgaagggtggttcagtacttgctcttgcggacacca |
4579800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4613742 - 4613482
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
|||||| |||||||||| ||||| ||| | |||||| | ||||||| | ||||||||||| |||||||| || | |||||| || ||||| |||||| |
|
|
| T |
4613742 |
cctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctctcttcacattggtgtcaatttccatcccaatttcccat |
4613643 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || || ||| |||| ||||||| ||||||||| || ||||||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||| |
|
|
| T |
4613642 |
tcattgcatatatatctgcagtttgctggctgatccgcgaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatc |
4613543 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
| ||||||| ||||||| |||| ||||| |||||| |||||||||||| |||||||| |
|
|
| T |
4613542 |
cacaatgagtcaagaatccgccaattgaagggtggtttaatacttgctcttgaggacacca |
4613482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 34 - 261
Target Start/End: Original strand, 4568197 - 4568424
Alignment:
| Q |
34 |
ttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctga |
133 |
Q |
| |
|
|||||| ||||||||| ||||||| ||||| |||||||| |||| |||||| ||||| |||||| | | ||||||||| |||| |||| ||||||||| |
|
|
| T |
4568197 |
ttcattcatcagcttctccacctcctctctcttcacatttgtatcaatttcgattccgatctccaacttattacaaatatatctgcagtatgttggctgc |
4568296 |
T |
|
| Q |
134 |
tcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagt |
233 |
Q |
| |
|
|||| |||||| | |||||| |||||||| |||| ||||||||||||||| | || || |||||||| ||||||| ||||||| |||||||||| || |
|
|
| T |
4568297 |
tcagaaaaaaaaggccaacataacattggtactctggcacaaatgctttccaatgtggagttccatccacaatgagtcaagaatcgtccaactgaagggt |
4568396 |
T |
|
| Q |
234 |
ggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
4568397 |
ggttcaacacttgctcttgcggacacca |
4568424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 262
Target Start/End: Complemental strand, 4515093 - 4514884
Alignment:
| Q |
53 |
acctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaac |
152 |
Q |
| |
|
||||| ||||| |||||||| ||| ||||| || |||||||||||||| || ||||||||||||||||||||||| |||||| |||| ||| ||||| |
|
|
| T |
4515093 |
acctcctctctcttcacattcatatcgatttcgatcccaatctcccattcattgcaaataaatctacagtttgttggttgatcaccaaagaattgccaac |
4514994 |
T |
|
| Q |
153 |
acaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttg |
252 |
Q |
| |
|
| | |||||| ||||| || || ||||| ||| ||||||| |||||||||||||||| ||||||| |||| ||||| ||||||| |||| |||||| |
|
|
| T |
4514993 |
aaagcattggcactccagcgcatatgctctcagtggttgagttccatccgcaatgagtcaagaatccgccaattgaagggtggttcaaaactttctcttg |
4514894 |
T |
|
| Q |
253 |
cggacaccaa |
262 |
Q |
| |
|
||||||||| |
|
|
| T |
4514893 |
tggacaccaa |
4514884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 4571080 - 4571333
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||| | || ||| ||||||||| ||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4571080 |
cctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctcatttctcttcacattagtatcgatttcgattccaatctcccat |
4571179 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || ||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| | | | |||||||| | ||||| ||||||| |
|
|
| T |
4571180 |
gtattgcagatatatctacagtttgctggctgatcagcaaaaaatggctaacacaacattggaactccagtagatatgctttcggtcgttgagttccatc |
4571279 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcg |
254 |
Q |
| |
|
| || |||| ||||| | ||||| ||||| |||||| ||||| |||||||| |
|
|
| T |
4571280 |
cacagtgagtcaagaaaccaccaattgaaggatggttcaatactttctcttgcg |
4571333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 4480859 - 4481062
Alignment:
| Q |
59 |
tctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaaca |
158 |
Q |
| |
|
||||| |||||||| |||| ||||| | ||||||||||||||| || ||||||| ||||| ||| | ||||||||| ||||| |||| ||||||||||| |
|
|
| T |
4480859 |
tctctcttcacattggtatcgatttcgagtccaatctcccattcattgcaaataattctacggttaggtggctgatcggcaaagaatggccaacacaaca |
4480958 |
T |
|
| Q |
159 |
ttggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggaca |
258 |
Q |
| |
|
|||| ||||| ||||| | |||||| ||||||| |||||||||||||||| ||||||| || | ||||| ||||||| |||| |||||| ||||| |
|
|
| T |
4480959 |
ttggcactccagcacatacactttcagtggttgagttccatccgcaatgagtcaagaatccgccgattgaagggtggttcaaaactttctcttgtggaca |
4481058 |
T |
|
| Q |
259 |
ccaa |
262 |
Q |
| |
|
|||| |
|
|
| T |
4481059 |
ccaa |
4481062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 4490379 - 4490118
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||| ||||| ||| | ||||| ||||| || ||||| |||| ||||| || |||||||||||| |
|
|
| T |
4490379 |
cctcatcttctttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatctcccat |
4490280 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| | ||||||| ||||| | | ||| |||||||||||||||| ||||||||||||||| ||||| ||||| || || || ||| |||| ||||||| |
|
|
| T |
4490279 |
tcttcgcaaataattctactgctaagtggttgatcagcaaaaaatggccaacacaacattggcactccagcacatatactctccatgattgagttccatc |
4490180 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaa |
262 |
Q |
| |
|
| ||||||| ||||||| ||||| ||||| ||| ||| ||| | |||||| ||||||||| |
|
|
| T |
4490179 |
cacaatgagtcaagaatccaccaattgaagggtgattcaataccttctcttgtggacaccaa |
4490118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 4457747 - 4457919
Alignment:
| Q |
46 |
cttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaat |
145 |
Q |
| |
|
|||| ||||||||||||| |||||||| |||| ||||| || |||||||| ||||| || |||||||||||||| ||||||||| |||| |||| ||| |
|
|
| T |
4457747 |
cttctccacctcatctctcttcacatttgtatcgatttccatcccaatctctcattcattgcaaataaatctacaacttgttggcttatcaccaaagaat |
4457846 |
T |
|
| Q |
146 |
gaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatc |
218 |
Q |
| |
|
| ||||| || |||||| ||||| || || ||||||||| ||||||| || ||||| ||||||| ||||||| |
|
|
| T |
4457847 |
ggccaacgcagcattggcactccagcgcatatgctttcagtggttgagtttcatccacaatgagtcaagaatc |
4457919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 262
Target Start/End: Original strand, 4493150 - 4493324
Alignment:
| Q |
88 |
tccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatg |
187 |
Q |
| |
|
|||||||||| |||| || ||||| |||||||||||||||||||||||| ||| || | ||||||||||||||| ||||||||||| ||| ||| | |
|
|
| T |
4493150 |
tccaatctccaattcattgcaaatcaatctacagtttgttggctgatcactaaagaaaggccaacacaacattggcactccggcacatatgtttttggta |
4493249 |
T |
|
| Q |
188 |
gttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaa |
262 |
Q |
| |
|
||||| |||||||| ||||||| ||||||| ||||| ||| ||||||| | | || |||||| ||||||||| |
|
|
| T |
4493250 |
gttgagttccatccacaatgagtcaagaatccaccaatcgaatggtggttcagcagtttctcttgtggacaccaa |
4493324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 3171849 - 3172110
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| | ||| || ||||| ||| | ||||| |||| || ||||| |||| |||||| || ||||||| |||| |
|
|
| T |
3171849 |
cctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggtatcaatttccatcccaatcttccat |
3171948 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| | ||||||| ||||| ||| | ||| |||||||||||||||| || |||||||||||| | ||| ||||| | ||||| ||||||| ||||||| |
|
|
| T |
3171949 |
tcttggcaaataattctactgttaggtggttgatcagcaaaaaatggcctacacaacattggcattccagcacatacactttccgtggttgagttccatc |
3172048 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacaccaa |
262 |
Q |
| |
|
|||| |||| ||||||| |||| ||||| |||||| |||| |||||||||||||||| |
|
|
| T |
3172049 |
cgcagtgagtcaagaatccgccaattgaaggatggttcaacactttctcttgcggacaccaa |
3172110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 4504295 - 4504204
Alignment:
| Q |
127 |
tggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatc |
218 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||| ||||||| ||||||| |
|
|
| T |
4504295 |
tggctgatcagaaaaaaatggccaacacaacattggcactccagcacaaacactttcagtggttgagttccatccacaatgagtcaagaatc |
4504204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 4299670 - 4299587
Alignment:
| Q |
176 |
atgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacac |
259 |
Q |
| |
|
||||||||||||||||| |||||||| || |||| ||||||| ||||| ||||| ||||||| ||||||| ||||| |||||| |
|
|
| T |
4299670 |
atgctttcaatggttgagttccatccacagtgagtcaagaatccaccaattgaagggtggttcagtacttgttcttgtggacac |
4299587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 261
Target Start/End: Complemental strand, 4391996 - 4391891
Alignment:
| Q |
156 |
acattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcgg |
255 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||| || ||||| ||||| | |||||||| || || | ||| ||||||| ||||||||||| ||| |
|
|
| T |
4391996 |
acattggaactctagaacaaatgctttcaatgggtgagtttcatccacaatgcgttaagaatccacaaattcaagggtggttcaatacttgctctttcgg |
4391897 |
T |
|
| Q |
256 |
acacca |
261 |
Q |
| |
|
|||||| |
|
|
| T |
4391896 |
acacca |
4391891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 34 - 262
Target Start/End: Original strand, 1281255 - 1281483
Alignment:
| Q |
34 |
ttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctga |
133 |
Q |
| |
|
|||||| |||| ||| |||||||| ||||| |||||||| |||| ||||| || ||||||| |||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
1281255 |
ttcattgatcaacttagccacctcctctctcttcacatttgtatcgatttccataccaatcttccattcattacaaataaatctacagtctgttggctga |
1281354 |
T |
|
| Q |
134 |
tcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagt |
233 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||| ||||||| ||| | ||||| || |
|
|
| T |
1281355 |
tcagcaaaaaatggccaacacaacattggcactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccgattgaagggt |
1281454 |
T |
|
| Q |
234 |
ggttcggtacttgctcttgcggacaccaa |
262 |
Q |
| |
|
||||| |||| |||||| ||||||||| |
|
|
| T |
1281455 |
ggttcaacactttctcttgtggacaccaa |
1281483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 44 - 261
Target Start/End: Complemental strand, 3700 - 3483
Alignment:
| Q |
44 |
agcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaa |
143 |
Q |
| |
|
|||||| ||||||||||||| ||||||| ||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |
|
|
| T |
3700 |
agcttctccacctcatctctcttcacatccatatcgatttcaagtccaatctcccattcgttgcaaataaatctacagtttgttggctgatcaccaaaga |
3601 |
T |
|
| Q |
144 |
atgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtac |
243 |
Q |
| |
|
||| |||||| | |||||| ||||| || || ||||||||| |||||||||||||||| ||||||| ||||||| ||||| ||||| |||| || |||| |
|
|
| T |
3600 |
atggccaacaaagcattggtactccagcgcatatgctttcagtggttgaattccatccacaatgagtcaagaatccaccaattgaagggtggatcagtac |
3501 |
T |
|
| Q |
244 |
ttgctcttgcggacacca |
261 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
3500 |
ttgctcttgtggacacca |
3483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 16686291 - 16686031
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||| | || ||| ||||||||||||| |||||||| || | |||||| || |||||||||||| |
|
|
| T |
16686291 |
cctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcatctctcttcacattggtgtcaatttccatgccaatctcccat |
16686192 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || |||||| |||| || |||| |||||||||||||||||||| ||||||||||||||||||||| ||| | || |||||| ||||||| ||||||| |
|
|
| T |
16686191 |
tcattgcaaatatatctgcattttgctggctgatcagcaaaaaatggccaacacaacattggaactccagcatatatactttcagtggttgagttccatc |
16686092 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
| ||||||| |||||||| ||| | ||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
16686091 |
cacaatgagttaagaatccaccgattgaaggatggtttaatacttgctcttgcgggcacca |
16686031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 1674392 - 1674595
Alignment:
| Q |
59 |
tctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaaca |
158 |
Q |
| |
|
||||| |||||||| |||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1674392 |
tctctcttcacattcgtatcaatttccataccaatcttccattcattacaaataaatctacagtttgttggctgatcagcaaaaaatggccaacacaaca |
1674491 |
T |
|
| Q |
159 |
ttggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggaca |
258 |
Q |
| |
|
|||| ||||| || || ||||||||| ||||||| ||||||||||| || | ||||||| || | ||||| ||||||| |||| |||||| ||||| |
|
|
| T |
1674492 |
ttggcactccagcgcatatgctttcagtggttgagttccatccgcagtgtgtcaagaatccgccgattgaagggtggttcaacactttctcttgtggaca |
1674591 |
T |
|
| Q |
259 |
ccaa |
262 |
Q |
| |
|
|||| |
|
|
| T |
1674592 |
ccaa |
1674595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 34 - 271
Target Start/End: Complemental strand, 20863834 - 20863597
Alignment:
| Q |
34 |
ttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctga |
133 |
Q |
| |
|
|||||||| |||| || ||||||| ||||| || ||||| || | |||||| || ||||||||||||| ||| ||||| |||| |||||||| |||||| |
|
|
| T |
20863834 |
ttcatttaccagcatctccacctcctctctcttgacattggtgtcaatttcgatcccaatctcccatttgttgcaaatgtatctgcagtttgtcggctga |
20863735 |
T |
|
| Q |
134 |
tcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagt |
233 |
Q |
| |
|
||||||||||||| ||| ||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||||| || |||| ||||| ||||| | |
|
|
| T |
20863734 |
tcagcaaaaaatggccagcacaacattggcactccagcacatatgctctcaatggttgagttccatccacaatgagttagaaatccaccaattgaaggat |
20863635 |
T |
|
| Q |
234 |
ggttcggtacttgctcttgcggacaccaaaccgcgatt |
271 |
Q |
| |
|
||||| || | |||||| ||||||||| ||||||| |
|
|
| T |
20863634 |
ggttcaacaccttctcttgtggacaccaactcgcgatt |
20863597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 56 - 237
Target Start/End: Original strand, 24103162 - 24103343
Alignment:
| Q |
56 |
tcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacaca |
155 |
Q |
| |
|
|||||||| |||||||| |||| ||||| | ||||||||||||||| | ||||||||||||||||||||||| |||||| |||| |||| |||||||| |
|
|
| T |
24103162 |
tcatctctcttcacatttgtatcgatttcgagtccaatctcccattcatagcaaataaatctacagtttgttggttgatcaccaaagaatggccaacaca |
24103261 |
T |
|
| Q |
156 |
acattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggtt |
237 |
Q |
| |
|
||||||| ||||| ||||| ||||||||| ||||||| |||||||||||||||| ||||||| ||||| |||| |||||| |
|
|
| T |
24103262 |
acattggcactccagcacatatgctttcagtggttgagttccatccgcaatgagtcaagaatccaccaatcgaagggtggtt |
24103343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 65 - 209
Target Start/End: Complemental strand, 28000059 - 27999915
Alignment:
| Q |
65 |
ttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaa |
164 |
Q |
| |
|
|||||||| ||| |||||| || ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
28000059 |
ttcacattcatatcaatttccataccaatcttccattcattacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggca |
27999960 |
T |
|
| Q |
165 |
ctccggcacaaatgctttcaatggttgaattccatccgcaatgag |
209 |
Q |
| |
|
|||| || || |||||||| ||||||| ||||||||||| |||| |
|
|
| T |
27999959 |
ctccagcgcatatgctttcggtggttgagttccatccgcagtgag |
27999915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 4710 - 4450
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
|||||||||| |||||| ||||| ||||| | |||||| |||| |||| |||| ||||| ||||||||||||| |||||| || ||| |||||||| |
|
|
| T |
4710 |
cctcatcttcattcctttatctcccgacatcaattcattgatcatattcgttaccttctctctcttcacattagtatcaatttccataccagtctcccat |
4611 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
| | ||| | | | |||||||||||||||| || ||||||| ||||||||||||||| ||||| |||| ||||||||||||||||| ||||||| |
|
|
| T |
4610 |
atatgggagatataccgatagtttgttggctgatcggcgaaaaatggccaacacaacattggcactcctacacatatgctttcaatggttgagttccatc |
4511 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
||||||||| ||||||| ||||| ||||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
4510 |
cgcaatgagtcaagaatccaccaattgaagggtggttcagtacttgctcttgtggacacca |
4450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 3086528 - 3086788
Alignment:
| Q |
1 |
cctcatcttctttccttcttctcctgacataatttcatttatcagcttcgccacctcatctcttttcacattagtattaatttcaattccaatctcccat |
100 |
Q |
| |
|
||||||||||||||||| ||||| ||| | |||||| ||||||||| | ||||| ||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3086528 |
cctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatctcccat |
3086627 |
T |
|
| Q |
101 |
tcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgaccaacacaacattggaactccggcacaaatgctttcaatggttgaattccatc |
200 |
Q |
| |
|
|| || ||| ||||||||||| |||| ||||| || |||||| ||||||||||||||| ||||| ||| | |||||||| ||||| ||||||| |
|
|
| T |
3086628 |
atattgcagatatatctacagtttattggttgatctccataaaatggccaacacaacattggcactccagcaagtacgctttcaaccgttgagttccatc |
3086727 |
T |
|
| Q |
201 |
cgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctcttgcggacacca |
261 |
Q |
| |
|
| ||||||| ||||||| ||||| ||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
3086728 |
cacaatgagtcaagaatccaccaattgaagggtgattcaatacttgctcttgcggacacca |
3086788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 51 - 261
Target Start/End: Complemental strand, 3658 - 3449
Alignment:
| Q |
51 |
ccacctcatctcttttcacattagtattaatttcaattccaatctcccattcgttacaaataaatctacagtttgttggctgatcagcaaaaaatgacca |
150 |
Q |
| |
|
||||||| ||||| |||||||| | || |||||| |||||||||||||||| || ||||| ||||||||||||||| || || | ||||||| ||| |
|
|
| T |
3658 |
ccacctcctctctcttcacattggaatctatttcacttccaatctcccattcattccaaatgcatctacagtttgttgagtgttcggggaaaaatggcca |
3559 |
T |
|
| Q |
151 |
acacaacattggaactccggcacaaatgctttcaatggttgaattccatccgcaatgagctaagaatcaaccaactgaagagtggttcggtacttgctct |
250 |
Q |
| |
|
|| || |||||||||||| | ||||||||||||||||||||| |||||||| ||||||| |||||||| ||||||| ||| ||||||| ||||||||| |
|
|
| T |
3558 |
acgcagcattggaactccagaacaaatgctttcaatggttgagttccatccacaatgagttaagaatccaccaact-aagggtggttcaacacttgctct |
3460 |
T |
|
| Q |
251 |
tgcggacacca |
261 |
Q |
| |
|
| ||||||||| |
|
|
| T |
3459 |
tacggacacca |
3449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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