View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1575_high_1 (Length: 503)

Name: NF1575_high_1
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1575_high_1
NF1575_high_1
[»] chr8 (8 HSPs)
chr8 (52-484)||(25488987-25489420)
chr8 (55-348)||(25385112-25385413)
chr8 (153-424)||(25603162-25603442)
chr8 (52-127)||(25603027-25603102)
chr8 (52-125)||(25799402-25799475)
chr8 (167-249)||(25799465-25799547)
chr8 (232-292)||(25321366-25321426)
chr8 (422-450)||(25385414-25385442)
[»] scaffold0070 (5 HSPs)
scaffold0070 (52-135)||(18540-18623)
scaffold0070 (52-125)||(38146-38219)
scaffold0070 (210-292)||(18458-18539)
scaffold0070 (449-482)||(17918-17951)
scaffold0070 (422-450)||(18361-18389)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 52 - 484
Target Start/End: Original strand, 25488987 - 25489420
Alignment:
Q  52 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttacctcttaaatag 151  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25488987 catatgaggaattgtttaatgcaaaactcagttttcttataaccaagaatcaaaataaatcctttgtctcatcttactatagttcttacctcttaaatag 25489086  T
Q  152 taacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaagg 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489087 taacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaagg 25489186  T
Q  252 tgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcat 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489187 tgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatgatatatcat 25489286  T
Q  352 caaagagtttaattactggaagcaattg-nnnnnnnnaaacatcttttttgcttgttgatttcgggcaaacaatatatttttgtacttttgacacaagat 450  Q
    |||| |||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  25489287 caaatagtttaattactggaagcaattgtttttttttaaacatcttttttgcttgttgatttcgtgcaaacaatatatttttgtacttttgacacaagat 25489386  T
Q  451 tatgtagcaacctagtaagtagacaccacctgat 484  Q
    ||||||||||||||||||||||||||||||||||    
T  25489387 tatgtagcaacctagtaagtagacaccacctgat 25489420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 55 - 348
Target Start/End: Original strand, 25385112 - 25385413
Alignment:
Q  55 atgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttac-------ctcttaa 147  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||    
T  25385112 atgaggaattgtttaatgcaaaactcagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagttcttatatattatctcttaa 25385211  T
Q  148 atagtaacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtcca 247  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||| | |||| |||||| ||||    
T  25385212 atagaaacttatactgttcttgtctcatcaaacagattttaagataaattcttagccaaaactgtaaaatcagtaattatgcaaaaaccagaatcatcca 25385311  T
Q  248 aaggtgaatggaccaacatgcatttgaaatttactttttatttgtgaatttttgtaaaaga--tgtcaagagacaaaagcagcaacaactattcatgata 345  Q
    ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |  | ||| |||||||| ||||||||||| || |||||||    
T  25385312 aaggtgaatggaccaccatgcatttgaaatttagtttttctttgtgaatttttgtaaaaaaaatttca-gagacaaaggcagcaacaacaatgcatgata 25385410  T
Q  346 tat 348  Q
    |||    
T  25385411 tat 25385413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 153 - 424
Target Start/End: Original strand, 25603162 - 25603442
Alignment:
Q  153 aacttatactgttcttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaaggt 252  Q
    |||||||||  ||||||| |||||||||  |||||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||| |||||| |||    
T  25603162 aacttatacaattcttgtttcatcaaaccaattttaagatgaattctcaaccaaaactgaaaaacctgcaattatgcagaaactagaatagtccaatggt 25603261  T
Q  253 gaatggaccaacatgcatttgaaatttact----------ttttatttgtgaatttttgtaaaagatgtcaagagacaaaagcagcaacaactattcatg 342  Q
    ||||||||||| |||||||  ||||||| |           |||||| | ||||||||||||| ||||||  |||||||| || | |||||| || ||||    
T  25603262 gaatggaccaatatgcattacaaatttagtgaatttggacatttattagcgaatttttgtaaacgatgtc-ggagacaaaggccggaacaacaatgcatg 25603360  T
Q  343 atatatcatcaaagagtttaattactggaagcaattgnnnnnnnnaaacatcttttttgcttgttgatttcgggcaaacaat 424  Q
    ||||||||||  |||||||||||||| |||| |||||         ||||||  |||||||||||||||| ||| |||||||    
T  25603361 atatatcatcttagagtttaattactagaagaaattgtttttttctaacatccattttgcttgttgattttgggaaaacaat 25603442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 127
Target Start/End: Original strand, 25603027 - 25603102
Alignment:
Q  52 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatctta 127  Q
    |||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||| ||||||||||    
T  25603027 catatgaggaattgtttaatgcaaaagccagtattcttgcaaccaagaataaaaataaatcctttctctcatctta 25603102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 52 - 125
Target Start/End: Original strand, 25799402 - 25799475
Alignment:
Q  52 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatct 125  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  25799402 catatgatgaattgtttaatacaaaagtcagttttcttataaccatgaataaaaataaatcctttgtctcatct 25799475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 25799465 - 25799547
Alignment:
Q  167 ttgtctcatcaaacagattttaagataaattctcagccaaaactgaaaaaccagcaattatgtagaaactagaatcgtccaaa 249  Q
    |||||||||| ||| |||||||||||| ||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||    
T  25799465 ttgtctcatctaactgattttaagatacattctcagcaaaaactgaaaaatcagcaattatgcagaaactagaatcatccaaa 25799547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 25321366 - 25321426
Alignment:
Q  232 aaactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgt 292  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25321366 aaactagaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttatttgt 25321426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 450
Target Start/End: Original strand, 25385414 - 25385442
Alignment:
Q  422 aatatatttttgtacttttgacacaagat 450  Q
    |||||||||||||||||||||||||||||    
T  25385414 aatatatttttgtacttttgacacaagat 25385442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 18623 - 18540
Alignment:
Q  52 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatcttactatagtt 135  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18623 catatgaagaattgtgtaatgcaaaagccagttttcttataaccatgaataaaaataaatcctttgtctcatcttactatagtt 18540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 52 - 125
Target Start/End: Complemental strand, 38219 - 38146
Alignment:
Q  52 catatgaggaattgtttaatgcaaaagccagttttcttataaccaagaataaaaataaatcctttgtctcatct 125  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  38219 catatgatgaattgtttaatgcaaaagtcagttttcttataaccatgaataaaaataaatcctttgtctcatct 38146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 18539 - 18458
Alignment:
Q  210 tgaaaaaccagcaattatgtagaaactagaatcgtccaaaggtgaatggaccaacatgcatttgaaatttactttttatttgt 292  Q
    ||||||| ||||||||||| | |||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  18539 tgaaaaatcagcaattatgca-aaactaaaatcatccaaaggtgaatggaccaacatgcatttgaaatttagtttttctttgt 18458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 17951 - 17918
Alignment:
Q  449 attatgtagcaacctagtaagtagacaccacctg 482  Q
    ||||||||||||||||||||||||||||||||||    
T  17951 attatgtagcaacctagtaagtagacaccacctg 17918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 422 - 450
Target Start/End: Complemental strand, 18389 - 18361
Alignment:
Q  422 aatatatttttgtacttttgacacaagat 450  Q
    |||||||||||||||||||||||||||||    
T  18389 aatatatttttgtacttttgacacaagat 18361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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