View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575_high_10 (Length: 239)
Name: NF1575_high_10
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 4332822 - 4333046
Alignment:
| Q |
1 |
aaagcttttcgaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaatgctgctggcattgcaggat |
100 |
Q |
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| T |
4332822 |
aaagcttttcaaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaatgctgctggcattgcaggat |
4332921 |
T |
|
| Q |
101 |
ttgttgttctaaattccaggttacttctctctctgcactttcatatgctttgtcgattattttgtgcttttaaatcaatggttttattcaggatttctaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4332922 |
ttgttgttctaaattccaggttacttctctctctgcactttcatatgctttgtcgattattttgtgcttttaaatcaatggttttattcaggatttctaa |
4333021 |
T |
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| Q |
201 |
tttgtgcattgctactagttcaaat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
4333022 |
tttgtgcattgctactagttcaaat |
4333046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 121
Target Start/End: Original strand, 4350407 - 4350509
Alignment:
| Q |
19 |
ttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaatgctgctggcattgcaggatttgttgttctaaattcca |
118 |
Q |
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| T |
4350407 |
ttgaacaaagttttaaaaggagatgaattcatggtaccaaagtggagagacgcacttcgtgatgctgctggccttgcaggatttgttgtcctgaattcca |
4350506 |
T |
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| Q |
119 |
ggt |
121 |
Q |
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||| |
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| T |
4350507 |
ggt |
4350509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 225
Target Start/End: Complemental strand, 4128934 - 4128882
Alignment:
| Q |
171 |
taaatcaatggttttattcaggatttctaatttgtgcattgctactagttcaaat |
225 |
Q |
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| T |
4128934 |
taaatcaattgttttattcgggatttataat--gtgcattgctactagttcaaat |
4128882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 4323704 - 4323640
Alignment:
| Q |
59 |
agtggagagacgcgcttcgtaatgctgctggcattgcaggatttgttgttctaaattccaggtta |
123 |
Q |
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| T |
4323704 |
agtggagaaatgagcttcgtgttgcggctggccttgctggatttgttgtcctaaattccaggtta |
4323640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 201
Target Start/End: Original strand, 45113485 - 45113524
Alignment:
| Q |
162 |
ttgtgcttttaaatcaatggttttattcaggatttctaat |
201 |
Q |
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| T |
45113485 |
ttgtgcttttgaatcaatgattttattcaggatttctaat |
45113524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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