View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575_high_19 (Length: 206)
Name: NF1575_high_19
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 2016217 - 2016409
Alignment:
| Q |
1 |
gtagtcccaggactttgttggcttttattatcaaaatgtccactagtaatatttattcgttttaagggcattgttgactctactggattttatttacgta |
100 |
Q |
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| T |
2016217 |
gtagtcccaggactttgttggcttttattatcaaaatgtccactagtaatatttattcgttttaagggcattgttgactctactggattttatttacgta |
2016316 |
T |
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| Q |
101 |
gccttttcattttagctcctcctatcttttttgtcattttcatattagtgattgcttctcactgagtttatatcaatgtctatatatcattgc |
193 |
Q |
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| T |
2016317 |
gccttttcattttagctcctcctatcttttttgtcattttcatattagtgattgcttctgactgagtttatatcaatgtctatatatcattgc |
2016409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 26248706 - 26248639
Alignment:
| Q |
74 |
ttgactctactggattttatttacgtagccttttcattttagctcctcctatcttttttgtcattttc |
141 |
Q |
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|||||||||||| | |||||||| |||||||||||| ||||| ||||||| | |||||||| ||||| |
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| T |
26248706 |
ttgactctactgtaatttatttatgtagccttttcaacttagcccctcctagcatttttgtccttttc |
26248639 |
T |
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