View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1575_high_6 (Length: 250)

Name: NF1575_high_6
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1575_high_6
NF1575_high_6
[»] chr3 (4 HSPs)
chr3 (11-250)||(26304163-26304402)
chr3 (14-170)||(49961030-49961186)
chr3 (14-170)||(409338-409494)
chr3 (14-170)||(414448-414604)
[»] chr6 (3 HSPs)
chr6 (14-233)||(8533418-8533637)
chr6 (14-170)||(20788090-20788246)
chr6 (25-170)||(24185823-24185968)
[»] chr7 (1 HSPs)
chr7 (14-209)||(35050000-35050195)
[»] chr1 (6 HSPs)
chr1 (14-130)||(49245400-49245516)
chr1 (14-209)||(41699631-41699826)
chr1 (14-209)||(41705225-41705420)
chr1 (14-194)||(40249785-40249965)
chr1 (25-170)||(24343936-24344081)
chr1 (25-170)||(24356314-24356459)
[»] chr5 (2 HSPs)
chr5 (14-209)||(23557914-23558109)
chr5 (118-221)||(14663384-14663487)
[»] chr4 (1 HSPs)
chr4 (14-209)||(54077124-54077319)
[»] chr2 (1 HSPs)
chr2 (14-170)||(15048641-15048797)
[»] scaffold0045 (1 HSPs)
scaffold0045 (14-196)||(44203-44384)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 26304163 - 26304402
Alignment:
11 cacagacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagt 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
26304163 cacagacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagt 26304262  T
111 aattgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaagttgcctctatgatc 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
26304263 aattgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgcaaaattcaaagaatttcaagtagaagttgcctctatgatc 26304362  T
211 tattgcaatacttcatttaaagattcagagggtttaaatt 250  Q
    |||||||||||||||||| |||||||||||||||||||||    
26304363 tattgcaatacttcattttaagattcagagggtttaaatt 26304402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 49961030 - 49961186
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||| |||||||||||| |||| | |||||||| | ||||||||||||||||||||||||||||| ||| ||||| ||| |||| ||||||  ||| ||    
49961030 agacaacattgaagcaatctgttgagcaatatgataatgcattgaaagataagattgaaaaggaaaacattgctgactttcgttcttttaatacagttat 49961129  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgc 170  Q
    | ||||| | ||||| |||||||||||||  ||||||||||||  ||||||||||||    
49961130 ttcttgtattagtcactttggctttgagttccaattccaaaaagcatttaccaatgc 49961186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 409494 - 409338
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||| || |||||||||||||| | || ||||| | ||||||||||||||| ||||||||||||| ||| || || ||| |||| ||||||   || ||    
409494 agacaacactgaagcaatttgttgagcagtatgataatgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcttttaatacggttat 409395  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgc 170  Q
    ||||||| | ||||| ||||||||||| |  ||||||||||||   |||||||||||    
409394 tgcttgtattagtcactttggctttgaattccaattccaaaaagcctttaccaatgc 409338  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 170
Target Start/End: Original strand, 414448 - 414604
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||| || |||||||||||||| | || ||||| | ||||||||||||||| ||||||||||||| ||| || || ||| |||| ||||||   || ||    
414448 agacaacactgaagcaatttgttgagcagtatgataatgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcttttaatacggttat 414547  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgc 170  Q
    ||||||| | ||||| ||||||||||| |  ||||||||||||   |||||||||||    
414548 tgcttgtattagtcactttggctttgaattccaattccaaaaagcctttaccaatgc 414604  T

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Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 14 - 233
Target Start/End: Complemental strand, 8533637 - 8533418
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
8533637 agacatcattgaagcaatttgttgaacaatatgacagtgcattgaaagataagattgaaaaggaaagcaaggctgattttggttcatttaattcagtaat 8533538  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaagttgcctctatgatctat 213  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| | |||||||| |||    
8533537 tgcttgtgtaagtcattttggctttgaatcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagtttcttctatgatgtat 8533438  T
214 tgcaatacttcatttaaaga 233  Q
    ||| ||||||||||| ||||    
8533437 tgccatacttcatttgaaga 8533418  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 20788246 - 20788090
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||| ||||||||||||||||| |  ||||||| | |||||||||||| || |||||||||||||  || ||||| ||| |||| ||||||  ||| ||    
20788246 agacaacattgaagcaatttgttgagaaatatgataatgcattgaaagacaaaattgaaaaggaaaaaattgctgactttcgttcttttaatacagttat 20788147  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgc 170  Q
    |  |||| | ||||| ||||| |||||||  ||||||||||||  ||||||||||||    
20788146 tttttgtattagtcactttggttttgagttccaattccaaaaagcatttaccaatgc 20788090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 170
Target Start/End: Complemental strand, 24185968 - 24185823
Alignment:
25 aagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaattgcttgtgtaa 124  Q
    |||||||||||| | || ||||| | ||||||||||||||| ||||||||||||| ||| || || ||| |||| ||||||   || ||||||||| | |    
24185968 aagcaatttgttgagcagtatgataatgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcgtttaatacggttattgcttgtatta 24185869  T
125 gtcattttggctttgagtcacaattccaaaaattatttaccaatgc 170  Q
    |||| ||||||||||| |  ||||||||||||   |||||||||||    
24185868 gtcactttggctttgaattccaattccaaaaagcctttaccaatgc 24185823  T

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Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 35050000 - 35050195
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||| ||||||||||||||||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||  |  |||    
35050000 agacaacattgaagcaatttgttgaacaatatgacaatgcgttgaaagataaaattgaaaaggaaagcatggctgattttgtttcatttaatacaacaat 35050099  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaagttgcctctatgat 209  Q
    ||||||| | |||| ||||||||||||||| ||||||||||||  |||||||||||| | |||||||||||||||| | ||| |||| ||||||||    
35050100 tgcttgtattagtctttttggctttgagtctcaattccaaaaagcatttaccaatgcaaaattcaaagaatttcaaattgaaattgcttctatgat 35050195  T

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Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 14 - 130
Target Start/End: Original strand, 49245400 - 49245516
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||    
49245400 agacatcattgaagcaatttgttgaacaatatgacagtgcattgaaagataagattgaaaaggaaagcagggatgattttggttcatttaattcagtaat 49245499  T
114 tgcttgtgtaagtcatt 130  Q
    |||||||||||||||||    
49245500 tgcttgtgtaagtcatt 49245516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 41699631 - 41699826
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||  |||||||||||| ||||||| |||  | | ||    
41699631 agacatcattgaagcaatttgttgaacaatatgataatgcattgaaagataaaattgaaaaggaaaatatggctgattttagttcattcaatagaattat 41699730  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaagttgcctctatgat 209  Q
    ||||||| ||||||||||||| ||||| || ||||| |||||   || |||||| || | ||||||||| |||||||||||||| || ||||||||    
41699731 tgcttgtataagtcattttggatttgaatctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgat 41699826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 41705225 - 41705420
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||  |||||||||||| ||||||| |||  | | ||    
41705225 agacatcattgaagcaatttgttgaacaatatgataatgcattgaaagataaaattgaaaaggaaaatatggctgattttagttcattcaatagaattat 41705324  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaagttgcctctatgat 209  Q
    ||||||| ||||||||||||| ||||| || ||||| |||||   || |||||| || | ||||||||| |||||||||||||| || ||||||||    
41705325 tgcttgtataagtcattttggatttgaatctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgat 41705420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 40249785 - 40249965
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||| ||||||||| ||||||| |||| ||||||  ||||||||| ||||| || ||||||||||||||||||||||||| ||||||||| | |  |||    
40249785 agacaacattgaagcgatttgttgaacagtatgacgatgcattgaatgataaaatcgaaaaggaaagcatggctgattttgattcatttaactcaacaat 40249884  T
114 tgcttgtgtaagtcattttggctttg-agtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtaga 194  Q
    ||||||||| |||||||||||||||| |||| || ||||| |||  |||||||| ||||| |||||||||||||||||||||    
40249885 tgcttgtgtgagtcattttggctttgaagtc-catttccagaaagcatttaccattgccaaattcaaagaatttcaagtaga 40249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 24343936 - 24344081
Alignment:
25 aagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaattgcttgtgtaa 124  Q
    |||||||||||| | || ||||| | ||||||||||||||| ||||||||||||| ||| || || ||| |||| ||||||   || ||||||||| | |    
24343936 aagcaatttgttgagcagtatgataatgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcttttaatacggttattgcttgtatta 24344035  T
125 gtcattttggctttgagtcacaattccaaaaattatttaccaatgc 170  Q
    |||| |||||||||||||  ||||||||||||   |||||||||||    
24344036 gtcactttggctttgagttccaattccaaaaagcctttaccaatgc 24344081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 24356314 - 24356459
Alignment:
25 aagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaattgcttgtgtaa 124  Q
    |||||||||||| | || ||||| | ||||||||||||||| ||||||||||||| ||| || || ||| |||| ||||||   || ||||||||| | |    
24356314 aagcaatttgttgagcagtatgataatgcattgaaagataaaattgaaaaggaaaacattgccgactttcgttcttttaatacggttattgcttgtatta 24356413  T
125 gtcattttggctttgagtcacaattccaaaaattatttaccaatgc 170  Q
    |||| ||||||||||| |  ||||||||||||   |||||||||||    
24356414 gtcactttggctttgaattccaattccaaaaagcctttaccaatgc 24356459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 209
Target Start/End: Original strand, 23557914 - 23558109
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||  |||||||||||| ||||||| |||  | | ||    
23557914 agacatcattgaagcaatttgttgaacaatatgataatgcattgaaagataaaattgaaaaggaaaatatggctgattttagttcattcaatagaattat 23558013  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaagttgcctctatgat 209  Q
    ||||||| ||||||||||||| ||||| || ||||| |||||   || |||||| || | ||||||||| |||||||||||||| || ||||||||    
23558014 tgcttgtataagtcattttggatttgaatctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgat 23558109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 221
Target Start/End: Complemental strand, 14663487 - 14663384
Alignment:
118 tgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaagttgcctctatgatctattgca 217  Q
    ||||||||||  |||||||||||||| |||||||||||   |||||||||||| |  ||||||||  | ||| ||||| |||  |||||||| ||||| |    
14663487 tgtgtaagtctctttggctttgagtctcaattccaaaaggcatttaccaatgcaaagttcaaagagctccaattagaaattgtttctatgatgtattgta 14663388  T
218 atac 221  Q
    ||||    
14663387 atac 14663384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 209
Target Start/End: Complemental strand, 54077319 - 54077124
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||||||| |||||||||||||  |||||||||||| ||||||| |||  | | ||    
54077319 agacatcattgaagcaatttgttgaacaatatgataatgcattgaaagataaaattgaaaaggaaaatatggctgattttagttcattcaatagaattat 54077220  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaagttgcctctatgat 209  Q
    ||||||| ||||||||||||| ||||| || ||||| |||||   || |||||| || | ||||||||| |||||||||||||| || ||||||||    
54077219 tgcttgtataagtcattttggatttgaatctcaatttcaaaaggcatataccaacgcaaaattcaaagagtttcaagtagaagtggcttctatgat 54077124  T

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Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 15048797 - 15048641
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||| ||||||||||||||||| | |||||||| | |||||||||||| || ||||||||||||| ||| ||||| ||| |||| ||||||  ||| ||    
15048797 agacaacattgaagcaatttgttgagcaatatgataatgcattgaaagacaaaattgaaaaggaaaacattgctgactttcgttcttttaatacagttat 15048698  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgc 170  Q
    | ||||| | ||||| |||||||||||||  ||||||||||||  ||||||||||||    
15048697 ttcttgtattagtcactttggctttgagttccaattccaaaaagcatttaccaatgc 15048641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 44203 - 44384
Alignment:
14 agacatcattgaagcaatttgttaaacaatatgacagtgcattgaaagataagattgaaaaggaaagcatggctgattttggttcatttaatttagtaat 113  Q
    ||||| || |||| ||||||||| |||||||||  | ||||||||||||||| || ||||||||||  | |||| ||||| ||||||| ||| || | ||    
44203 agacaacaatgaaacaatttgttgaacaatatggtaatgcattgaaagataaaat-gaaaaggaaaatagggctcattttagttcattcaatataattat 44301  T
114 tgcttgtgtaagtcattttggctttgagtcacaattccaaaaattatttaccaatgccatattcaaagaatttcaagtagaag 196  Q
    ||||||| ||||||||||||| ||||| || ||||| |||||   || ||||||||| | ||||||||| |||||||||||||    
44302 tgcttgtataagtcattttggatttgaatctcaatttcaaaaggcatataccaatgcaaaattcaaagagtttcaagtagaag 44384  T

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