View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1575_high_8 (Length: 250)

Name: NF1575_high_8
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1575_high_8
NF1575_high_8
[»] chr4 (3 HSPs)
chr4 (1-244)||(4332421-4332664)
chr4 (67-180)||(4356588-4356701)
chr4 (55-167)||(4323974-4324086)
[»] chr6 (8 HSPs)
chr6 (19-167)||(5173995-5174143)
chr6 (55-169)||(5422053-5422167)
chr6 (55-167)||(5092790-5092902)
chr6 (55-167)||(5160638-5160750)
chr6 (98-167)||(5149885-5149954)
chr6 (19-167)||(5272862-5273010)
chr6 (88-169)||(5070590-5070671)
chr6 (43-167)||(5107908-5108032)
[»] chr7 (1 HSPs)
chr7 (98-169)||(34715183-34715254)
[»] chr3 (1 HSPs)
chr3 (67-167)||(48016274-48016374)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 4332664 - 4332421
Alignment:
Q  1 gaaattctcgactcctggattgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4332664 gaaattctcgactcctggattgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagcttt 4332565  T
Q  101 gaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacattgtactttcttatactatgaatatcaaaccg 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4332564 gaagagatgtagagagatgtgaagtgaatgatgcgcgagtgtcttcgcctctaaaactcaagaacacatcgtactttcttatactatgaatatcaaaccg 4332465  T
Q  201 atcttttggagcgaacatgtcatcaacgtctatgttcatctcag 244  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  4332464 atcttttggagcgaacatgtcatcagcgtctatgttcatatcag 4332421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 180
Target Start/End: Complemental strand, 4356701 - 4356588
Alignment:
Q  67 tgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaaca 166  Q
    |||||||||||||| || |||||||| | | ||||||||||   ||  || ||||||||||||||||| | ||||||||  |||||||||||||| ||||    
T  4356701 tgatcgtccttgaagacaataattccggcgttttgaagagagaaagtaagatgtgaagtgaatgatgctctagtgtcttctcctctaaaactcaaaaaca 4356602  T
Q  167 cattgtactttctt 180  Q
    ||| ||||||||||    
T  4356601 catcgtactttctt 4356588  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 4323974 - 4324086
Alignment:
Q  55 ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa 154  Q
    |||||||| || ||||| |||||||||| ||  ||||| | | | ||||||||||  | ||| |||||| |||||||||||||||||||||  ||||  |    
T  4323974 ctttgaagcgactgatcatccttgaaaatgaggattccggcgttctgaagagatgatgtgagatgtgaaatgaatgatgcgcgagtgtcttctcctcgga 4324073  T
Q  155 aactcaagaacac 167  Q
    ||||||| |||||    
T  4324074 aactcaaaaacac 4324086  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 5174143 - 5173995
Alignment:
Q  19 attgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggt 118  Q
    |||||||||||||||| ||| || ||| ||| ||| |||||||| |||| ||||||||| |||||| ||||||||  | |||||||||| |   | ||||    
T  5174143 attgcttgtagtagtgattttgaaatgtgatctcctctttgaagtgaatcatcgtccttaaaaacgctaattccattgttttgaagagaagcgtataggt 5174044  T
Q  119 gtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacac 167  Q
    ||||||||||||| | ||| ||||| | |||||| ||||| ||||||||    
T  5174043 gtgaagtgaatgaagtgcgcgtgtcctcgcctctgaaacttaagaacac 5173995  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 169
Target Start/End: Complemental strand, 5422167 - 5422053
Alignment:
Q  55 ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa 154  Q
    |||||||| |||| ||||||| |||||||  |||||||  |  |||||||||| | | |||| ||||||||||||||||| ||||| || |  |||||||    
T  5422167 ctttgaagcgaatcatcgtccctgaaaactttaattccgtaattttgaagagaagcatagagatgtgaagtgaatgatgcacgagtatcctctcctctaa 5422068  T
Q  155 aactcaagaacacat 169  Q
    |||| ||||||||||    
T  5422067 aacttaagaacacat 5422053  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 167
Target Start/End: Complemental strand, 5092902 - 5092790
Alignment:
Q  55 ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa 154  Q
    |||||||| |||| ||| ||| | |||||  |||||||||   ||||||| || | | |||| ||||||||||||||||| ||||| ||||| |||||||    
T  5092902 ctttgaagcgaatcatcatccctaaaaacattaattccagcattttgaagtgaagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaa 5092803  T
Q  155 aactcaagaacac 167  Q
    |||| ||||||||    
T  5092802 aacttaagaacac 5092790  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 5160638 - 5160750
Alignment:
Q  55 ctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaa 154  Q
    |||| ||| |||| ||||||| | |||||| ||| ||||| | ||||||| |  | | |||| ||||||||||||||||| ||||| ||||| |||||||    
T  5160638 ctttcaagagaatcatcgtccctaaaaacgttaagtccagcgttttgaagtgcagcatagagatgtgaagtgaatgatgcacgagtatcttttcctctaa 5160737  T
Q  155 aactcaagaacac 167  Q
    |||| ||||||||    
T  5160738 aacttaagaacac 5160750  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 5149885 - 5149954
Alignment:
Q  98 tttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacac 167  Q
    |||||||||| | | |||| |||||||||||||||||||| || ||||  ||||||||||| ||||||||    
T  5149885 tttgaagagaagcatagagatgtgaagtgaatgatgcgcgcgtatcttcccctctaaaacttaagaacac 5149954  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 5273010 - 5272862
Alignment:
Q  19 attgcttgtagtagtgttttagagatgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggt 118  Q
    |||||| ||||||||| ||| || ||| ||| ||| ||||||||  ||| || |||||| |||||| ||||||||  | |||||||||| |   | || |    
T  5273010 attgctagtagtagtgattttgaaatgtgatctcctctttgaagtaaatcattgtccttaaaaacgttaattccattgttttgaagagaagcgtatagat 5272911  T
Q  119 gtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacac 167  Q
    ||||||||||||| | ||| ||||| | |||||| ||||| ||||||||    
T  5272910 gtgaagtgaatgaagtgcgcgtgtcctcgcctctgaaacttaagaacac 5272862  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 5070590 - 5070671
Alignment:
Q  88 attccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacat 169  Q
    ||||||||| || ||||||| | | |||| |||||||||||||| | ||||||||| |  ||||| ||||| ||||||||||    
T  5070590 attccagagtttcgaagagaagcatagagatgtgaagtgaatgaagagcgagtgtcctctcctctgaaacttaagaacacat 5070671  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 5107908 - 5108032
Alignment:
Q  43 atgcgatgtcccctttgaagggaatgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgt 142  Q
    |||| |||||| |||| ||| |||| ||||||  | |||||| | ||||||| | | |||||||| | | |||| ||||||||||| || || ||||| |    
T  5107908 atgcaatgtcctcttttaagcgaatcatcgtctctaaaaacgttgattccagcgttctgaagagaagcatagagatgtgaagtgaaggaagcacgagtat 5108007  T
Q  143 ctttgcctctaaaactcaagaacac 167  Q
    |||||||||| ||||| | ||||||    
T  5108008 ctttgcctctgaaacttaggaacac 5108032  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 34715183 - 34715254
Alignment:
Q  98 tttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaacacat 169  Q
    |||||||||| ||| |||| |||||||| |||  | ||||||| ||||| ||||| ||||||||||||||||    
T  34715183 tttgaagagaggtatagagatgtgaagtcaatctttcgcgagtatctttccctctgaaactcaagaacacat 34715254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 167
Target Start/End: Original strand, 48016274 - 48016374
Alignment:
Q  67 tgatcgtccttgaaaacgataattccagagctttgaagagatgtagagaggtgtgaagtgaatgatgcgcgagtgtctttgcctctaaaactcaagaaca 166  Q
    ||||||||| |  ||||| ||||||||||| |||||||||| | | |||| || ||||| || || || || ||||||||||||| |||||| | |||||    
T  48016274 tgatcgtccctataaacgttaattccagagttttgaagagaagcatagagatgcgaagtaaaggaagcacgtgtgtctttgcctcgaaaacttaggaaca 48016373  T
Q  167 c 167  Q
    |    
T  48016374 c 48016374  T

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