View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1575_low_14 (Length: 238)

Name: NF1575_low_14
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1575_low_14
NF1575_low_14
[»] chr3 (3 HSPs)
chr3 (1-221)||(26304409-26304629)
chr3 (48-186)||(43679400-43679539)
chr3 (41-133)||(43678201-43678294)
[»] chr8 (1 HSPs)
chr8 (45-186)||(15091915-15092057)
[»] chr2 (6 HSPs)
chr2 (41-186)||(25199794-25199940)
chr2 (41-186)||(43009764-43009910)
chr2 (59-186)||(25204699-25204827)
chr2 (41-186)||(43012061-43012207)
chr2 (41-186)||(43014358-43014504)
chr2 (84-186)||(35073931-35074033)
[»] chr1 (2 HSPs)
chr1 (41-186)||(25672611-25672757)
chr1 (41-186)||(25677458-25677604)


Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 26304409 - 26304629
Alignment:
Q  1 tttctgtgattgaaagtgagaaagtattcaaagaattatattatgttggaatttattaggaagttatttggtcagaagaattgtcttttgagaaagcaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304409 tttctgtgattgaaagtgagaaagtattcaaagaattatattatgttggaatttattaggaagttatttggtcagaagaattgtcttttgagaaagcaaa 26304508  T
Q  101 ctgctctgatacatttgcagattgtatttccttttgtacatcaatgaaaatcgcaagtttacttgaaatagcctcctctctataataatagtttttatca 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26304509 ctgctctgatacatttgcaaattgtatttccttttgtacatcaatgaaaatcgcaagtttacttgaaatagcctcctctctataataatagtttttatca 26304608  T
Q  201 gtatgtgacaaagcaaaagat 221  Q
    |||||||| ||||||||||||    
T  26304609 gtatgtgataaagcaaaagat 26304629  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 48 - 186
Target Start/End: Original strand, 43679400 - 43679539
Alignment:
Q  48 ggaatttattaggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtacatcaatg 146  Q
    |||| |||||| ||||||| |||| |||||||| || |||| ||||| |||||||| |||||||||||||||||| |||| ||| ||||||  |||||||    
T  43679400 ggaagttattaagaagttacttggccagaagaagttatcttctgagagagcaaactactctgatacatttgcagactgtaattcattttgttaatcaatg 43679499  T
Q  147 aaaatcgcaagtttacttgaaatagcctcctctctataat 186  Q
    ||||||||||||||||||| || |||||| ||||||||||    
T  43679500 aaaatcgcaagtttacttgcaaaagcctcatctctataat 43679539  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 133
Target Start/End: Original strand, 43678201 - 43678294
Alignment:
Q  41 ttatgttggaatttattaggaagttatttggtcagaagaat-tgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttcctt 133  Q
    |||||||| || |||| ||||||||| ||||||||||| |  | |||| ||||| ||||||||||| ||||||||||||||| |||| ||||||    
T  43678201 ttatgttgaaagttatcaggaagttacttggtcagaaggagctatcttctgagagagcaaactgctttgatacatttgcagactgtaattcctt 43678294  T

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Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 15092057 - 15091915
Alignment:
Q  45 gttggaatttattaggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtacatca 143  Q
    ||||||| |||||||||||||| |||| |||||||| || |||| ||||| ||||||||||||||||||||||||||| |||| ||||||||||  ||||    
T  15092057 gttggaagttattaggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgatacatttgcagactgtaattccttttgttaatca 15091958  T
Q  144 atgaaaatcgcaagtttacttgaaatagcctcctctctataat 186  Q
    |||||||||||||||||||||| || |||||| ||||||||||    
T  15091957 atgaaaatcgcaagtttacttgcaaaagcctcatctctataat 15091915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 25199940 - 25199794
Alignment:
Q  41 ttatgttggaatttattaggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtac 139  Q
    ||||||||||| |||||||||||||| ||||  ||||||| || |||| ||||| |||||||||||||||||||||||||||||||||||||||||||      
T  25199940 ttatgttggaagttattaggaagttacttggctagaagaagttatcttctgagagagcaaactgctctgatacatttgcagattgtatttccttttgtta 25199841  T
Q  140 atcaatgaaaatcgcaagtttacttgaaatagcctcctctctataat 186  Q
    ||||| |||||||||||||||||||| || || ||| ||||||||||    
T  25199840 atcaacgaaaatcgcaagtttacttgcaaaagtctcatctctataat 25199794  T

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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 43009764 - 43009910
Alignment:
Q  41 ttatgttggaatttattaggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtac 139  Q
    |||||| |||| |||||||||||||| |||| |||||||| || |||| ||||| |||||||||||||||||  |||| |||||||| ||||||||||      
T  43009764 ttatgtgggaagttattaggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgtta 43009863  T
Q  140 atcaatgaaaatcgcaagtttacttgaaatagcctcctctctataat 186  Q
    ||| |||||||||||||||||||||| || |||||| ||||||||||    
T  43009864 atctatgaaaatcgcaagtttacttgcaaaagcctcatctctataat 43009910  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 59 - 186
Target Start/End: Complemental strand, 25204827 - 25204699
Alignment:
Q  59 ggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtacatcaatgaaaatcgcaag 157  Q
    ||||||||||||| || ||||| || |||| |||||  ||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  25204827 ggaagttatttggccaaaagaagttatcttctgagagggcaaactgctctgatacatttgcagattgtatttccttttgttaatcaatgaatatcgcaag 25204728  T
Q  158 tttacttgaaatagcctcctctctataat 186  Q
    |||||||| || || ||| ||||||||||    
T  25204727 tttacttgcaaaagtctcatctctataat 25204699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 43012061 - 43012207
Alignment:
Q  41 ttatgttggaatttattaggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtac 139  Q
    |||||| |||| |||||||||||||| |||  |||||||| || |||| ||||| |||||||||||||||||  |||| |||||||| ||||||||||      
T  43012061 ttatgtgggaagttattaggaagttacttgaccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgtta 43012160  T
Q  140 atcaatgaaaatcgcaagtttacttgaaatagcctcctctctataat 186  Q
    ||| |||||||||||||||||||||| || |||||| ||||||||||    
T  43012161 atctatgaaaatcgcaagtttacttgcaaaagcctcatctctataat 43012207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 43014358 - 43014504
Alignment:
Q  41 ttatgttggaatttattaggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtac 139  Q
    |||||| |||| |||||||||||||| |||  |||||||| || |||| ||||| |||||||||||||||||  |||| |||||||| ||||||||||      
T  43014358 ttatgtgggaagttattaggaagttacttgaccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgtta 43014457  T
Q  140 atcaatgaaaatcgcaagtttacttgaaatagcctcctctctataat 186  Q
    ||| |||||||||||||||||||||| || |||||| ||||||||||    
T  43014458 atctatgaaaatcgcaagtttacttgcaaaagcctcatctctataat 43014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 186
Target Start/End: Original strand, 35073931 - 35074033
Alignment:
Q  84 tcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtacatcaatgaaaatcgcaagtttacttgaaatagcctcctctctat 183  Q
    |||| ||||| ||||||||||||||||||||||||||| |||  |||| |||||  |||||||||||||||||||||||||| || |||||| |||||||    
T  35073931 tcttctgagagagcaaactgctctgatacatttgcagactgtgattccgtttgttaatcaatgaaaatcgcaagtttacttgcaaaagcctcatctctat 35074030  T
Q  184 aat 186  Q
    |||    
T  35074031 aat 35074033  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 25672757 - 25672611
Alignment:
Q  41 ttatgttggaatttattaggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtac 139  Q
    ||||||||||| |||||||||||||| |||| |||||||| || |||| ||||| |||||||||||||||||  |||| |||||||| ||||||||||      
T  25672757 ttatgttggaagttattaggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgtta 25672658  T
Q  140 atcaatgaaaatcgcaagtttacttgaaatagcctcctctctataat 186  Q
    ||| |||||||||||||||||||||| || |||||| ||||||||||    
T  25672657 atctatgaaaatcgcaagtttacttgcaaaagcctcatctctataat 25672611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 25677604 - 25677458
Alignment:
Q  41 ttatgttggaatttattaggaagttatttggtcagaagaa-ttgtcttttgagaaagcaaactgctctgatacatttgcagattgtatttccttttgtac 139  Q
    |||||| |||| |||||||||||||| |||| |||||||| || |||| ||||| |||||||||||||||||  |||| |||||||| ||||||||||      
T  25677604 ttatgtgggaagttattaggaagttacttggccagaagaagttatcttctgagagagcaaactgctctgataggtttgaagattgtaattccttttgtta 25677505  T
Q  140 atcaatgaaaatcgcaagtttacttgaaatagcctcctctctataat 186  Q
    ||| |||||||||||||||||||||| || |||||| ||||||||||    
T  25677504 atctatgaaaatcgcaagtttacttgcaaaagcctcatctctataat 25677458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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