View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1575_low_19 (Length: 215)
Name: NF1575_low_19
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1575_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 543332 - 543133
Alignment:
| Q |
1 |
gagtatctttccacctctctagtgccttctattgacggtcaccaacctctatatcgtggcttttgattaggttttatattcacttcatcttcttttcctt |
100 |
Q |
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| T |
543332 |
gagtatctttccacctctctagtgccttccattgacggtcaccaacctctgtatcgtggcttttgattgggctttatattcacttcatcttcttttcctt |
543233 |
T |
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| Q |
101 |
ttcattaattttgcatggaatatgatatgatatgaccaacgaagcatagtaattatgagtgtacagtattctcacaattaataactggtaactagtaagt |
200 |
Q |
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| T |
543232 |
ttcattaatttagcatggaatatgatatgatatgaccaacgaagcatagtaattatgagtgtacattattctcacaattaataactggtaattagtaagt |
543133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 35753152 - 35753205
Alignment:
| Q |
72 |
ttttatattcacttcatcttcttttccttttcattaattttgcatggaatatga |
125 |
Q |
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| T |
35753152 |
ttttatattcacttcgtcttcttttcattttctttaattttgcatggaatatga |
35753205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 26182617 - 26182531
Alignment:
| Q |
42 |
ccaacctctatatcgtggcttttgattaggttttatattcacttcatct---tcttttccttttcattaattttgcatggaatatga |
125 |
Q |
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| T |
26182617 |
ccaacctctatatcgtagcttttgtttggtttttatattcaattcatcttcttcttttccctttcttatattttgcatggaatatga |
26182531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 33509450 - 33509406
Alignment:
| Q |
137 |
caacgaagcatagtaattatgagtgtacagtattctcacaattaa |
181 |
Q |
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| T |
33509450 |
caacgaaatatagtaattatgaatgtacattattctcacaattaa |
33509406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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