View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1575_low_21 (Length: 202)

Name: NF1575_low_21
Description: NF1575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1575_low_21
NF1575_low_21
[»] chr1 (5 HSPs)
chr1 (47-171)||(42441126-42441253)
chr1 (1-32)||(2125209-2125240)
chr1 (1-33)||(3607729-3607761)
chr1 (1-33)||(19796981-19797013)
chr1 (1-33)||(51276834-51276866)
[»] chr2 (2 HSPs)
chr2 (1-32)||(9933708-9933739)
chr2 (1-33)||(7737064-7737096)
[»] chr7 (1 HSPs)
chr7 (1-37)||(17101713-17101749)
[»] chr4 (1 HSPs)
chr4 (1-33)||(4688247-4688279)
[»] chr3 (3 HSPs)
chr3 (1-33)||(10017248-10017280)
chr3 (1-33)||(10254708-10254740)
chr3 (1-33)||(13723988-13724020)


Alignment Details
Target: chr1 (Bit Score: 105; Significance: 1e-52; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 42441126 - 42441253
Alignment:
Q  47 agagaatttaatcttaaagttaaactacttcaagttatggtcatgcactcatatccccctctc--tgtcttatcttttgtataagcaaatgtta-gttgt 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||| |||||    
T  42441126 agagaatttaatcttaaagttaaactacttcaagttatggtcatgcactcatatccccctctctttgtcttatcttttgtataagcaaattttaggttgt 42441225  T
Q  144 tggtgtattaataggtaagggaaatgtt 171  Q
    ||||||||||||||||||||||||||||    
T  42441226 tggtgtattaataggtaagggaaatgtt 42441253  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 2125209 - 2125240
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctc 32  Q
    ||||||||||||||||||||||||||||||||    
T  2125209 aagcacctaagaaattgtacctaaattttctc 2125240  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3607761 - 3607729
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctct 33  Q
    |||||||||||||||| ||||||||||||||||    
T  3607761 aagcacctaagaaattctacctaaattttctct 3607729  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19797013 - 19796981
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctct 33  Q
    |||||||||||||||||||||||| ||||||||    
T  19797013 aagcacctaagaaattgtacctaagttttctct 19796981  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51276834 - 51276866
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctct 33  Q
    |||||||||||||||||||||||| ||||||||    
T  51276834 aagcacctaagaaattgtacctaagttttctct 51276866  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 9933708 - 9933739
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctc 32  Q
    ||||||||||||||||||||||||||||||||    
T  9933708 aagcacctaagaaattgtacctaaattttctc 9933739  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7737096 - 7737064
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctct 33  Q
    |||||||||||||||||||||||| ||||||||    
T  7737096 aagcacctaagaaattgtacctaagttttctct 7737064  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17101713 - 17101749
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctctaaaa 37  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  17101713 aagcacctaagaaattgtacctaagttttctccaaaa 17101749  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4688279 - 4688247
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctct 33  Q
    |||||||||||||||||||||||| ||||||||    
T  4688279 aagcacctaagaaattgtacctaagttttctct 4688247  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10017248 - 10017280
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctct 33  Q
    ||||||||||| |||||||||||||||||||||    
T  10017248 aagcacctaaggaattgtacctaaattttctct 10017280  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10254708 - 10254740
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctct 33  Q
    ||||||||||| |||||||||||||||||||||    
T  10254708 aagcacctaaggaattgtacctaaattttctct 10254740  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13724020 - 13723988
Alignment:
Q  1 aagcacctaagaaattgtacctaaattttctct 33  Q
    |||||||||||||||||||||||| ||||||||    
T  13724020 aagcacctaagaaattgtacctaagttttctct 13723988  T

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